BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750663.2.1
(1282 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD885158.1|CD885158 G100D.001F02F010209 G100D Triticum a... 291 6e-077
gb|BJ271483.1|BJ271483 BJ271483 Y. Ogihara unpublished cDNA... 285 4e-075
gb|CA501477.1|CA501477 WHE4034_B09_C18ZT Wheat meiotic anth... 274 1e-071
gb|CD886403.1|CD886403 G118.102D11R010922 G118 Triticum aes... 242 5e-062
gb|CD886402.1|CD886402 G118.102D11F010601 G118 Triticum aes... 220 2e-055
gb|BE400452.1|BE400452 AWB003.G11F000328 ITEC AWB Wheat Mei... 125 8e-027
gb|AL809242.1|AL809242 AL809242 a:11 Triticum aestivum cDNA... 50 4e-004
gb|CV763216.1|CV763216 FGAS057605 Triticum aestivum FGAS: L... 42 0.093
gb|CV764504.1|CV764504 FGAS058889 Triticum aestivum FGAS: L... 42 0.093
>gb|CD885158.1|CD885158 G100D.001F02F010209 G100D Triticum aestivum cDNA clone G100D001F02,
mRNA sequence
Length = 671
Score = 291 bits (147), Expect = 6e-077
Identities = 341/405 (84%), Gaps = 3/405 (0%)
Strand = Plus / Plus
Query: 878 accaactctagactcggcaaactgccgtgccgcatcgatgcagaagccatagttcgctag 937
|||||| || |||||||||||||||| | ||| |||||||||||| |||| || | |
Sbjct: 12 accaaccctggactcggcaaactgcctcgacgcttcgatgcagaaggcataatttgatct 71
Query: 938 tgaaaggtgagccccctctgtcatgatgaacacgatagcctcaaaaccgacttcggaagc 997
|||||||||| ||||||| |||||| |||| |||||||| || || || | |||||
Sbjct: 72 tgaaaggtga---ccctctgacatgataaacattatagcctcgaagcctacccctgaagc 128
Query: 998 atctggatggcgtgctgtaatggagagcagcaatattactgttctccagcccatctgtga 1057
|||||| ||||| |||||||||||||||||||| | || |||||||| |||||||| ||
Sbjct: 129 atctgggtggcgagctgtaatggagagcagcaacaccacagttctccaacccatctgcga 188
Query: 1058 ctttatatgtgccgcatttgctttgacgagccgtgcaacctcctgtgtgatgttctcaca 1117
||||| ||| |||| ||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct: 189 ttttatgtgtcccgcgtttgctttgacaagccgtgcaacctcttgtgtaatattctcaca 248
Query: 1118 atacgcatctgctacccgtgcgtcgagcttgagaactaactgcaacgacctcagtaattc 1177
|| ||||| ||||| ||||| || ||||| |||||||| ||||| |||||||| || ||
Sbjct: 249 gtatgcatccgctacacgtgcatccagcttcagaactaattgcaatgacctcagcaactc 308
Query: 1178 atcagcaagattctccttgtatggtagcaacctctggcatatcctcaggagtccaaaaat 1237
|||||||| ||||| |||||||| || |||||||||||||||| ||| || ||||||||
Sbjct: 309 gtcagcaaggttctctttgtatggaagtaacctctggcatatccgcagaaggccaaaaat 368
Query: 1238 agctttctccacgagagcacacggcataactgtggactgaactat 1282
|||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 369 agctttctccacaagggcacatggcatgactgtggactgaactat 413
>gb|BJ271483.1|BJ271483 BJ271483 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh26b04 5', mRNA sequence
Length = 653
Score = 285 bits (144), Expect = 4e-075
Identities = 385/464 (82%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 227 cgagatgttgtgcgcgtgaagccacgtca-gctcccacaggctgtcgcccccgatcgtgc 285
||||||||||| | | || |||||||||| |||||||||||||||||||||| |||||||
Sbjct: 477 cgagatgttgttcacatggagccacgtcaagctcccacaggctgtcgccccctatcgtgc 418
Query: 286 tcctcttcgcaaggatgcccttgctcttcatcacgagcagaatgttcttgagcaggtccg 345
||||||| || ||||| ||| ||||||||||| ||| ||| |||||| |||| ||||||
Sbjct: 417 tcctcttggcgaggatccccctgctcttcatcgcgaccaggatgttcctgagaaggtcca 358
Query: 346 ggaccacctcctgcagccggtcgctccgcttgcctcggaccttgaccttgacgtacttct 405
||| || ||||| ||| |||||| |||||||| ||||||||| ||||| | ||||||
Sbjct: 357 ggatcagttcctgaagcttgtcgctgcgcttgccccggaccttggtcttgatgcacttct 298
Query: 406 ccatccggctcaggacccccagccacagcttgcagaaactgcttaggccgaaaaggtccg 465
|||||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |
Sbjct: 297 ccatccggctgaggacccccagccacagcttgcagaagctgctcagcccgaagaggtctg 238
Query: 466 gcaagagctggaggtataccttcgcaaccagcttcatggcgagcacaagtgacccttcca 525
| || ||||| ||||| |||||||| ||||| |||| ||||||||| || || |||||||
Sbjct: 237 gtaacagctgaaggtagaccttcgctaccagtttcacggcgagcacgagggatccttcca 178
Query: 526 tgtttctgtagtccttctgggagtggttctggctgatctccagcaaatcatcgagcaagg 585
|||| |||| ||||||||| |||||||||||| ||| |||||||| || || |||||
Sbjct: 177 tgttcctgtggtccttctgtgagtggttctgggcgatttccagcaagtcgtccagcaaca 118
Query: 586 agaatatgacgaggtcaaaggcatgggaccacgtcgcggactggaggcagagttctcccg 645
|||||||||| | || || || || ||||| || | ||||||||||| | || | |
Sbjct: 117 cgaatatgacgtgatcgaaagcgtgtgaccatgtagtggactggaggcctatcccttcgg 58
Query: 646 tggatgttaggcatcgctggagagaagccagcgcatggtttcgc 689
| | |||||||||||||||||| ||| ||| || |||||||||
Sbjct: 57 tcgctgttaggcatcgctggagtgaaaccaatgcgtggtttcgc 14
>gb|CA501477.1|CA501477 WHE4034_B09_C18ZT Wheat meiotic anther cDNA library Triticum aestivum
cDNA clone WHE4034_B09_C18, mRNA sequence
Length = 562
Score = 274 bits (138), Expect = 1e-071
Identities = 252/290 (86%)
Strand = Plus / Minus
Query: 993 gaagcatctggatggcgtgctgtaatggagagcagcaatattactgttctccagcccatc 1052
||||||||||| ||||| |||||||||||||||||||| | || |||||||| ||||||
Sbjct: 538 gaagcatctgggtggcgagctgtaatggagagcagcaacaccacagttctccaacccatc 479
Query: 1053 tgtgactttatatgtgccgcatttgctttgacgagccgtgcaacctcctgtgtgatgttc 1112
|| || ||||| ||| |||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 478 tgcgattttatgtgtcccgcgtttgctttgacaagccgtgcaacctcttgtgtgatgttc 419
Query: 1113 tcacaatacgcatctgctacccgtgcgtcgagcttgagaactaactgcaacgacctcagt 1172
||||| || ||||| ||||| ||||| || ||||| |||||||| ||||| ||||||||
Sbjct: 418 tcacagtatgcatccgctacacgtgcatccagcttcagaactaattgcaatgacctcagc 359
Query: 1173 aattcatcagcaagattctccttgtatggtagcaacctctggcatatcctcaggagtcca 1232
| ||||||||||| ||||| |||||||| || |||||||||||||||| ||| || |||
Sbjct: 358 agctcatcagcaaggttctctttgtatggaagtaacctctggcatatccgcagaaggcca 299
Query: 1233 aaaatagctttctccacgagagcacacggcataactgtggactgaactat 1282
||||||||||||||||| || || || ||||| |||||||||||||||||
Sbjct: 298 aaaatagctttctccacaagggcgcatggcatgactgtggactgaactat 249
>gb|CD886403.1|CD886403 G118.102D11R010922 G118 Triticum aestivum cDNA clone G118102D11,
mRNA sequence
Length = 649
Score = 242 bits (122), Expect = 5e-062
Identities = 242/282 (85%)
Strand = Plus / Plus
Query: 227 cgagatgttgtgcgcgtgaagccacgtcagctcccacaggctgtcgcccccgatcgtgct 286
||||||||||| | | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 368 cgagatgttgttcacatggagccacgtcagctcccacaggctgtcgccccctatcgtgct 427
Query: 287 cctcttcgcaaggatgcccttgctcttcatcacgagcagaatgttcttgagcaggtccgg 346
|||||| || ||||| ||| ||||||||||| ||| ||| |||||| |||| |||||| |
Sbjct: 428 cctcttggcgaggatccccctgctcttcatcgcgaccaggatgttcctgagaaggtccag 487
Query: 347 gaccacctcctgcagccggtcgctccgcttgcctcggaccttgaccttgacgtacttctc 406
|| || ||||| ||| |||||| |||||||| ||||||||| ||||| | |||||||
Sbjct: 488 gatcagttcctgaagcttgtcgctgcgcttgccccggaccttggtcttgatgcacttctc 547
Query: 407 catccggctcaggacccccagccacagcttgcagaaactgcttaggccgaaaaggtccgg 466
||||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 548 catccggctgaggacccccagccacagcttgcagaagctgctcagcccgaagaggtctgg 607
Query: 467 caagagctggaggtataccttcgcaaccagcttcatggcgag 508
|| ||||| ||||| |||||||| ||||| |||| ||||||
Sbjct: 608 taacagctgaaggtagaccttcgctaccagtttcacggcgag 649
>gb|CD886402.1|CD886402 G118.102D11F010601 G118 Triticum aestivum cDNA clone G118102D11,
mRNA sequence
Length = 650
Score = 220 bits (111), Expect = 2e-055
Identities = 294/355 (82%)
Strand = Plus / Minus
Query: 400 acttctccatccggctcaggacccccagccacagcttgcagaaactgcttaggccgaaaa 459
|||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 650 acttctccatccggctgaggacccccagccacagcttgcagaagctgctcagcccgaaga 591
Query: 460 ggtccggcaagagctggaggtataccttcgcaaccagcttcatggcgagcacaagtgacc 519
|||| || || ||||| ||||| |||||||| | ||| |||| ||||||||| || || |
Sbjct: 590 ggtctggtaacagctgaaggtagaccttcgctaacagtttcacggcgagcacgagggatc 531
Query: 520 cttccatgtttctgtagtccttctgggagtggttctggctgatctccagcaaatcatcga 579
|||||||||| |||| ||||||||| |||||||||||| ||| |||||||| || || |
Sbjct: 530 cttccatgttcctgtggtccttctgtgagtggttctgggcgatttccagcaagtcgtcca 471
Query: 580 gcaaggagaatatgacgaggtcaaaggcatgggaccacgtcgcggactggaggcagagtt 639
|||| |||||||||| | || || || || ||||| || | ||||||||||| |
Sbjct: 470 gcaacacgaatatgacgtgatcgaaagcgtgtgaccatgtagtggactggaggcctatcc 411
Query: 640 ctcccgtggatgttaggcatcgctggagagaagccagcgcatggtttcgcacctcctccc 699
|| | || | |||||||||||||||||| ||| ||| || |||||||||||||| || |
Sbjct: 410 cttcggtcgctgttaggcatcgctggagtgaaaccaatgcgtggtttcgcacctcttctc 351
Query: 700 tctgatccaggctcagtttcttcagtgcttgcagcagcctgagccacatctccct 754
|||| |||| |||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct: 350 tctggtccaagctcagctttttcagcgcttgcagcagtttgagccacatctccct 296
Score = 97.6 bits (49), Expect = 2e-018
Identities = 165/203 (81%), Gaps = 3/203 (1%)
Strand = Plus / Minus
Query: 842 catcaagtccagggcacggacagacctatcagctaaaccaactctagactcggcaaactg 901
|||||| ||||||||||| | ||||| || | || |||||| || ||||||||||||||
Sbjct: 211 catcaaatccagggcacgaatggacctgtctgttagaccaaccctggactcggcaaactg 152
Query: 902 ccgtgccgcatcgatgcagaagccatagttcgctagtgaaaggtgagccccctctgtcat 961
|| || ||| || ||||||||| |||| || | | |||||||||| ||||||| |||
Sbjct: 151 ccttgacgcttcaatgcagaaggcataatttgatcttgaaaggtga---ccctctgacat 95
Query: 962 gatgaacacgatagcctcaaaaccgacttcggaagcatctggatggcgtgctgtaatgga 1021
|| |||| ||||||||||| || || | ||||||||||| ||||| |||||||||||
Sbjct: 94 gacaaacatgatagcctcaaggcctacccctgaagcatctgggtggcgagctgtaatgga 35
Query: 1022 gagcagcaatattactgttctcc 1044
||||||||| | ||| |||||||
Sbjct: 34 gagcagcaacactacagttctcc 12
>gb|BE400452.1|BE400452 AWB003.G11F000328 ITEC AWB Wheat Meiotic Stage Library Triticum
aestivum cDNA clone AWB003.G11, mRNA sequence
Length = 454
Score = 125 bits (63), Expect = 8e-027
Identities = 135/159 (84%)
Strand = Plus / Minus
Query: 227 cgagatgttgtgcgcgtgaagccacgtcagctcccacaggctgtcgcccccgatcgtgct 286
||||||||||| | | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 159 cgagatgttgttcacatggagccacgtcagctcccacaggctgtcgccccctatcgtgct 100
Query: 287 cctcttcgcaaggatgcccttgctcttcatcacgagcagaatgttcttgagcaggtccgg 346
|||||| || ||||| ||| ||| ||||||| || ||| | |||| |||| ||||||||
Sbjct: 99 cctcttggcgaggatccccctgcccttcatcgcggccaggacgttcctgaggaggtccgg 40
Query: 347 gaccacctcctgcagccggtcgctccgcttgcctcggac 385
|| || |||||| ||| |||||| |||||||| |||||
Sbjct: 39 gatcagctcctgaagcttgtcgctgcgcttgccccggac 1
>gb|AL809242.1|AL809242 AL809242 a:11 Triticum aestivum cDNA clone A10_a11_plate_15, mRNA
sequence
Length = 586
Score = 50.1 bits (25), Expect = 4e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1223 caggagtccaaaaatagctttctccacgagagcacacggcataactgtggactgaac 1279
|||||| || |||| |||||||||||| ||| ||| ||||| ||||||||||||||
Sbjct: 465 caggaggcctaaaacagctttctccaccagattacagggcattactgtggactgaac 409
>gb|CV763216.1|CV763216 FGAS057605 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.093
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1164 gacctcagtaattcatcagcaagattctccttgtatggtagcaacctctggca 1216
||||||||||| ||||| | ||||||||||| || || |||| |||||||||
Sbjct: 405 gacctcagtaagtcatccaccagattctccttataaggaagcagcctctggca 353
>gb|CV764504.1|CV764504 FGAS058889 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 833
Score = 42.1 bits (21), Expect = 0.093
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 1164 gacctcagtaattcatcagcaagattctccttgtatggtagcaacctctggca 1216
||||||||||| ||||| | ||||||||||| || || |||| |||||||||
Sbjct: 404 gacctcagtaagtcatccaccagattctccttataaggaagcagcctctggca 352
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238,358
Number of Sequences: 636343
Number of extensions: 238358
Number of successful extensions: 64513
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64484
Number of HSP's gapped (non-prelim): 25
length of query: 1282
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1262
effective length of database: 354,513,379
effective search space: 447395884298
effective search space used: 447395884298
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)