BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ251799.1|BJ251799 BJ251799 Y. Ogihara unpublished cDNA... 240 9e-062
gb|DN949166.1|DN949166 KUCD01_13_G10_T3 WSWR cDNA library T... 240 9e-062
gb|CD876249.1|CD876249 AZO3.109B19R011126 AZO3 Triticum aes... 202 2e-050
gb|CA601760.1|CA601760 wr1.pk0005.a10 wr1 Triticum aestivum... 174 4e-042
gb|CD907359.1|CD907359 G468.106L06R010929 G468 Triticum aes... 94 1e-017
gb|BQ171554.1|BQ171554 WHE1411_H07_P13ZT Wheat drought stre... 82 5e-014
gb|BQ170540.1|BQ170540 WHE1787_E05_I09ZT Wheat pre-anthesis... 78 8e-013
gb|BJ246249.1|BJ246249 BJ246249 Y. Ogihara unpublished cDNA... 70 2e-010
gb|BJ252180.1|BJ252180 BJ252180 Y. Ogihara unpublished cDNA... 70 2e-010
gb|CA644548.1|CA644548 wre1n.pk0089.b10 wre1n Triticum aest... 70 2e-010
gb|BJ254587.1|BJ254587 BJ254587 Y. Ogihara unpublished cDNA... 56 3e-006
gb|CD908612.1|CD908612 G468.110G08F010817 G468 Triticum aes... 56 3e-006
gb|CD918066.1|CD918066 G608.107N14F010906 G608 Triticum aes... 56 3e-006
gb|CD931700.1|CD931700 GR45.115F02R010613 GR45 Triticum aes... 56 3e-006
gb|CK208981.1|CK208981 FGAS020710 Triticum aestivum FGAS: L... 54 1e-005
gb|BJ277085.1|BJ277085 BJ277085 Y. Ogihara unpublished cDNA... 50 2e-004
gb|BJ308591.1|BJ308591 BJ308591 Y. Ogihara unpublished cDNA... 48 7e-004
gb|BJ310669.1|BJ310669 BJ310669 Y. Ogihara unpublished cDNA... 48 7e-004
gb|CD454275.1|CD454275 WHE1774_D02_H04ZT CS wheat pre-anthe... 48 7e-004
gb|BJ321368.1|BJ321368 BJ321368 Y. Ogihara unpublished cDNA... 44 0.010
gb|AL827796.1|AL827796 AL827796 p:739 Triticum aestivum cDN... 44 0.010
gb|CA714586.1|CA714586 wdk3c.pk023.j10 wdk3c Triticum aesti... 44 0.010
gb|DR733007.1|DR733007 FGAS077262 Triticum aestivum FGAS: T... 44 0.010
gb|DR733011.1|DR733011 FGAS077266 Triticum aestivum FGAS: T... 44 0.010
gb|BG314127.1|BG314127 WHE2459_E02_I03ZS Triticum monococcu... 40 0.16
gb|BJ263628.1|BJ263628 BJ263628 Y. Ogihara unpublished cDNA... 40 0.16
gb|BJ298200.1|BJ298200 BJ298200 Y. Ogihara unpublished cDNA... 40 0.16
gb|BJ301413.1|BJ301413 BJ301413 Y. Ogihara unpublished cDNA... 40 0.16
gb|BJ307216.1|BJ307216 BJ307216 Y. Ogihara unpublished cDNA... 40 0.16
gb|BQ235990.1|BQ235990 TaE05039H01F TaE05 Triticum aestivum... 40 0.16
gb|BQ802609.1|BQ802609 WHE2827_H09_P17ZS Triticum monococcu... 40 0.16
gb|BQ902847.1|BQ902847 Ta03_02d07_R Ta03_AAFC_ECORC_Fusariu... 40 0.16
gb|CA502462.1|CA502462 WHE4047_G09_N17ZT Wheat meiotic anth... 40 0.16
gb|CA630872.1|CA630872 wle1n.pk0039.c1 wle1n Triticum aesti... 40 0.16
gb|CD877511.1|CD877511 AZO4.100H12R011121 AZO4 Triticum aes... 40 0.16
gb|CD923234.1|CD923234 G750.107E22F010529 G750 Triticum aes... 40 0.16
gb|CK153534.1|CK153534 FGAS032161 Triticum aestivum FGAS: T... 40 0.16
gb|CK153576.1|CK153576 FGAS032211 Triticum aestivum FGAS: T... 40 0.16
gb|CK153636.1|CK153636 FGAS032281 Triticum aestivum FGAS: T... 40 0.16
gb|CK207510.1|CK207510 FGAS019134 Triticum aestivum FGAS: L... 40 0.16
gb|CK209115.1|CK209115 FGAS020858 Triticum aestivum FGAS: L... 40 0.16
gb|CN012003.1|CN012003 WHE3891_D11_G21ZS Wheat Fusarium gra... 40 0.16
>gb|BJ251799.1|BJ251799 BJ251799 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf20j18 3', mRNA sequence
Length = 609
Score = 240 bits (121), Expect = 9e-062
Identities = 226/261 (86%)
Strand = Plus / Plus
Query: 318 tcttcagggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaaga 377
||||| ||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct: 303 tcttcggggtctcgggcggtgcagtccaacggatcaaggcccagttcaggccttggaaga 362
Query: 378 agggatgccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctt 437
||||||||||||| ||||| | |||||| || |||||| |||||| ||||||||| |
Sbjct: 363 agggatgccgcttgatctcggcagctcctttcctcgagcctagccggagctctggctcct 422
Query: 438 tcacaagcagccctctgatcagatctcgagcgtggaagcttacagctggattatcaggga 497
|||| |||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||
Sbjct: 423 tcacgagcaaccctctgatcagatcgcgagcctggtagctgacagctgggctatcaggga 482
Query: 498 acttcaagccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatg 557
|||||| |||||||||| |||||||| |||||||| ||||||||||||||| ||||||
Sbjct: 483 acttcagcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatg 542
Query: 558 gtgtcttgccatagagtaatt 578
|||||||||| ||||| ||||
Sbjct: 543 gtgtcttgccgtagagcaatt 563
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||| ||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 195 actagaagagctcaaactcaatgtcgtctccattcatccggaactcgaggcacttgcctt 254
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 255 ccttcttcttccgtg 269
>gb|DN949166.1|DN949166 KUCD01_13_G10_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 1235
Score = 240 bits (121), Expect = 9e-062
Identities = 226/261 (86%)
Strand = Plus / Plus
Query: 318 tcttcagggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaaga 377
||||| ||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct: 465 tcttcggggtctcgggcggtgcagtccaacggatcaaggcccagttcaggccttggaaga 524
Query: 378 agggatgccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctt 437
||||||||||||| ||||| | |||||| || |||||| |||||| ||||||||| |
Sbjct: 525 agggatgccgcttgatctcggcagctcctttcctcgagcctagccggagctctggctcct 584
Query: 438 tcacaagcagccctctgatcagatctcgagcgtggaagcttacagctggattatcaggga 497
|||| |||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||
Sbjct: 585 tcacgagcaaccctctgatcagatcgcgagcctggtagctgacagctgggctatcaggga 644
Query: 498 acttcaagccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatg 557
|||||| |||||||||| |||||||| |||||||| ||||||||||||||| ||||||
Sbjct: 645 acttcagcccctgtgagaccacatttgtaagtgtttcatcattgccaggtcccctgaatg 704
Query: 558 gtgtcttgccatagagtaatt 578
|||||||||| ||||| ||||
Sbjct: 705 gtgtcttgccgtagagcaatt 725
Score = 61.9 bits (31), Expect = 4e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||| ||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 357 actagaagagctcaaactcaatgtcgtctccattcatccggaactcgaggcacttgcctt 416
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 417 ccttcttcttccgtg 431
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 124 atatctgatggtattaacaaggaataaagttacaggc 160
>gb|CD876249.1|CD876249 AZO3.109B19R011126 AZO3 Triticum aestivum cDNA clone AZO3109B19,
mRNA sequence
Length = 598
Score = 202 bits (102), Expect = 2e-050
Identities = 208/242 (85%), Gaps = 1/242 (0%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 358 gggtctcgggcggtgcagtccagcggatcaaggcccagttcaggccttggaagaagggat 417
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaa 443
||||||| | ||| | |||||| || |||||| |||||| ||||||||| |||||||
Sbjct: 418 gccgcttgacctcggcagctcctttcctcgagcctagccggagctctggctccttcacaa 477
Query: 444 gcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttca 503
||| ||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||||
Sbjct: 478 gcaaccctctgatcagatcgcgagcctggtagctgacagctgggctatcagggaacttca 537
Query: 504 agccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtct 563
|||||||||| |||||||| |||| ||| |||||||| |||||| ||||||||||||
Sbjct: 538 gcccctgtgagaacacatttgtaagtg-ttcatcattgccgggtcccctgaatggtgtct 596
Query: 564 tg 565
||
Sbjct: 597 tg 598
Score = 69.9 bits (35), Expect = 2e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||||||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 244 actagaagagctcgaactcaatgtcgtctccattcatccggaactcaaggcacttgcctt 303
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 304 ccttcttcttccgtg 318
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 11 atatctgatggtattaacaaggaataaagttacaggc 47
>gb|CA601760.1|CA601760 wr1.pk0005.a10 wr1 Triticum aestivum cDNA clone wr1.pk0005.a10 5'
end, mRNA sequence
Length = 546
Score = 174 bits (88), Expect = 4e-042
Identities = 182/212 (85%), Gaps = 1/212 (0%)
Strand = Plus / Minus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 212 gggtctcgggcggtgcagtccagcggatcaaggcccagttcaggccttggaagaagggat 153
Query: 384 gccgcttaatctcagtggctcctctcgacgagccaagccggta-ctctggctctttcaca 442
||||||| ||||| | |||||| || |||||| |||| | | ||||||||| ||||||
Sbjct: 152 gccgcttgatctcggcagctcctttcctcgagcctagcccggagctctggctccttcaca 93
Query: 443 agcagccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttc 502
|||| ||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||||
Sbjct: 92 agcaaccctctgatcagatcgcgagcctggtagctgacagctgggctatcagggaacttc 33
Query: 503 aagccctgtgagatcacatttgagagtgtttc 534
| |||||||||| |||||||| ||||||||
Sbjct: 32 agcccctgtgagaccacatttgtaagtgtttc 1
Score = 69.9 bits (35), Expect = 2e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||||||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 326 actagaagagctcgaactcaatgtcgtctccattcatccggaactcaaggcacttgcctt 267
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 266 ccttcttcttccgtg 252
>gb|CD907359.1|CD907359 G468.106L06R010929 G468 Triticum aestivum cDNA clone G468106L06,
mRNA sequence
Length = 501
Score = 93.7 bits (47), Expect = 1e-017
Identities = 125/151 (82%)
Strand = Plus / Plus
Query: 318 tcttcagggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaaga 377
||||| ||||||| || || || ||||| |||||||||||||||||||||||| || |
Sbjct: 348 tcttcggggtctcgggcggggcagtccaacggatcaaggcccagttcaggcctgggaaaa 407
Query: 378 agggatgccgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctt 437
|||||||||||| ||||| | |||||| || |||||| |||||| ||| ||||| |
Sbjct: 408 agggatgccgctggatctcggcagctcctttcctcgagcctagccggagctcgggctcct 467
Query: 438 tcacaagcagccctctgatcagatctcgagc 468
|||| |||| ||||||||||||||| |||||
Sbjct: 468 tcacgagcaaccctctgatcagatcgcgagc 498
Score = 60.0 bits (30), Expect = 2e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
||||||||||||| ||||| |||||||| ||||||| |||||| || || || | |||||
Sbjct: 240 actaaaagagctcaaactcaatgtcgtctccattcatccggaactcgaggcactggcctt 299
Query: 273 cctttttctt 282
|||| |||||
Sbjct: 300 ccttcttctt 309
Score = 58.0 bits (29), Expect = 7e-007
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 30 atatttgatggtattaacaaggcataaagttacaggc 66
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 7 atatctgatggtattaacaaggaataaagttacaggc 43
>gb|BQ171554.1|BQ171554 WHE1411_H07_P13ZT Wheat drought stressed leaf cDNA library Triticum
aestivum cDNA clone WHE1411_H07_P13, mRNA sequence
Length = 419
Score = 81.8 bits (41), Expect = 5e-014
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 324 gggtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggat 383
||||||| || ||||| ||||| ||||||||||||||||||||||||| |||||||| |
Sbjct: 332 gggtctcgggcggtgcagtccaacggatcaaggcccagttcaggccttggaagaaggggt 391
Query: 384 gccgcttaatctc 396
||||||| |||||
Sbjct: 392 gccgcttgatctc 404
Score = 69.9 bits (35), Expect = 2e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||||||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 218 actagaagagctcgaactcaatgtcgtctccattcatccggaactcaaggcacttgcctt 277
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 278 ccttcttcttccgtg 292
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 25 ttctaatatttgatggtattaacaaggcataaa 57
|||| |||| ||||||||||||||||| |||||
Sbjct: 16 ttctgatatctgatggtattaacaaggaataaa 48
>gb|BQ170540.1|BQ170540 WHE1787_E05_I09ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1787_E05_I09, mRNA sequence
Length = 332
Score = 77.8 bits (39), Expect = 8e-013
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
||||||||||||||||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 236 actaaaagagctcgaactcaatgtcgtctccattcatccggaactcaaggcacttgcctt 295
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 296 ccttcttcttccgtg 310
Score = 42.1 bits (21), Expect = 0.041
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 attaacaaggcataaagttacaggc 66
|||||||||| ||||||||||||||
Sbjct: 15 attaacaaggaataaagttacaggc 39
>gb|BJ246249.1|BJ246249 BJ246249 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf22b24 5', mRNA sequence
Length = 348
Score = 69.9 bits (35), Expect = 2e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||||||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 131 actagaagagctcgaactcaatgtcgtctccattcatccggaactcaaggcacttgcctt 72
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 71 ccttcttcttccgtg 57
Score = 40.1 bits (20), Expect = 0.16
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 30 atatttgatggtattaacaaggcataaa 57
|||| ||||||||||||||||| |||||
Sbjct: 328 atatctgatggtattaacaaggaataaa 301
>gb|BJ252180.1|BJ252180 BJ252180 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf22b24 3', mRNA sequence
Length = 245
Score = 69.9 bits (35), Expect = 2e-010
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||||||||| |||||||| ||||||| |||||| || || || |||||||
Sbjct: 139 actagaagagctcgaactcaatgtcgtctccattcatccggaactcaaggcacttgcctt 198
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 199 ccttcttcttccgtg 213
>gb|CA644548.1|CA644548 wre1n.pk0089.b10 wre1n Triticum aestivum cDNA clone
wre1n.pk0089.b10 5' end, mRNA sequence
Length = 734
Score = 69.9 bits (35), Expect = 2e-010
Identities = 91/106 (85%), Gaps = 3/106 (2%)
Strand = Plus / Minus
Query: 465 gagcgtggaagcttacagctggattatcagggaacttcaagccctgtgagatcaca-ttt 523
|||| ||| |||| |||| ||| ||||||||||||||| |||||||||| |||| |||
Sbjct: 487 gagcttggtagctgacagntgggctatcagggaacttcagcccctgtgagaccacatttt 428
Query: 524 gagagtgtttcctcattg-ccaggt-cccttgaatggtgtcttgcc 567
| |||||||| |||||| |||||| ||||||||||||||||||||
Sbjct: 427 gtaagtgtttcatcattgcccaggtccccttgaatggtgtcttgcc 382
>gb|BJ254587.1|BJ254587 BJ254587 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf6d23 3', mRNA sequence
Length = 642
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| ||| ||||||||||| ||| |||| ||||| ||||||||
Sbjct: 475 atcagggcccagttcacgccctcaaagaaggggtgctgctttatctccgtggctcc 530
>gb|CD908612.1|CD908612 G468.110G08F010817 G468 Triticum aestivum cDNA clone G468110G08,
mRNA sequence
Length = 530
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| ||| ||||||||||| ||| |||| ||||| ||||||||
Sbjct: 188 atcagggcccagttcacgccctcaaagaaggggtgctgctttatctccgtggctcc 133
>gb|CD918066.1|CD918066 G608.107N14F010906 G608 Triticum aestivum cDNA clone G608107N14,
mRNA sequence
Length = 632
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| ||| ||||||||||| ||| |||| ||||| ||||||||
Sbjct: 229 atcagggcccagttcacgccctcaaagaaggggtgctgctttatctccgtggctcc 174
>gb|CD931700.1|CD931700 GR45.115F02R010613 GR45 Triticum aestivum cDNA clone GR45115F02,
mRNA sequence
Length = 487
Score = 56.0 bits (28), Expect = 3e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||||||||| ||||||||||| || ||| |||| || |||| |||||||||
Sbjct: 319 atcaaggcccagttcagcccttcaaagaaagggtgctgcttgatttcagctgctcctctc 378
>gb|CK208981.1|CK208981 FGAS020710 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1140
Score = 54.0 bits (27), Expect = 1e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
||||||||||| ||| ||||||||||| ||| |||| ||||| ||||||||
Sbjct: 790 ggcccagttcacgccctcaaagaaggggtgctgctttatctccgtggctcc 740
>gb|BJ277085.1|BJ277085 BJ277085 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh27n03 3', mRNA sequence
Length = 691
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
|||||||||||||||| ||||||||||| || ||| |||| || |||| |||||||||
Sbjct: 309 atcaaggcccagttcaacccttcaaagaaagggtgctgcttgatttcagctgctcctctc 368
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatc 462
||| || |||| || ||| ||||| || || |||| |||||||| |||||
Sbjct: 369 aacgttcccagcctgttctccggctccttgactagcaatcctctgatgagatc 421
>gb|BJ308591.1|BJ308591 BJ308591 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd16j20 3', mRNA sequence
Length = 641
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| ||| || |||||||| ||| |||| ||||| ||||||||
Sbjct: 509 atcagggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggctcc 564
>gb|BJ310669.1|BJ310669 BJ310669 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd8e11 3', mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| ||| || |||||||| ||| |||| ||||| ||||||||
Sbjct: 461 atcagggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggctcc 516
>gb|CD454275.1|CD454275 WHE1774_D02_H04ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1774_D02_H04, mRNA sequence
Length = 601
Score = 48.1 bits (24), Expect = 7e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
|||| ||||||||||| ||| || |||||||| ||| |||| ||||| ||||||||
Sbjct: 490 atcagggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggctcc 545
>gb|BJ321368.1|BJ321368 BJ321368 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf20j24 3', mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||| ||||||||||| ||| || |||||||| ||| |||| |||||
Sbjct: 234 cggatcagggcccagttcacgccctcgaagaaggggtgctgcttgatctc 283
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 548 cccttgaatggtgtcttgcc 567
||||||||||||||||||||
Sbjct: 435 cccttgaatggtgtcttgcc 454
>gb|AL827796.1|AL827796 AL827796 p:739 Triticum aestivum cDNA clone F06_p739_plate_10, mRNA
sequence
Length = 370
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||| ||||||||||| ||| || |||||||| ||| |||| |||||
Sbjct: 85 cggatcagggcccagttcacgccctcgaagaaggggtgctgcttgatctc 36
>gb|CA714586.1|CA714586 wdk3c.pk023.j10 wdk3c Triticum aestivum cDNA clone wdk3c.pk023.j10
5' end, mRNA sequence
Length = 432
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||| ||||||||||| ||| || |||||||| ||| |||| |||||
Sbjct: 185 cggatcagggcccagttcacgccctcgaagaaggggtgctgcttgatctc 136
>gb|DR733007.1|DR733007 FGAS077262 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 883
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||| ||||||||||| ||| || |||||||| ||| |||| |||||
Sbjct: 436 cggatcagggcccagttcacgccctcgaagaaggggtgctgcttgatctc 485
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 548 cccttgaatggtgtcttgcc 567
||||||||||||||||||||
Sbjct: 637 cccttgaatggtgtcttgcc 656
>gb|DR733011.1|DR733011 FGAS077266 Triticum aestivum FGAS: TaLt7 Triticum aestivum cDNA,
mRNA sequence
Length = 922
Score = 44.1 bits (22), Expect = 0.010
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 347 cggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||| ||||||||||| ||| || |||||||| ||| |||| |||||
Sbjct: 437 cggatcagggcccagttcacgccctcgaagaaggggtgctgcttgatctc 486
>gb|BG314127.1|BG314127 WHE2459_E02_I03ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2459_E02_I03,
mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 547 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 594
>gb|BJ263628.1|BJ263628 BJ263628 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh5h11 3', mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 491 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 538
>gb|BJ298200.1|BJ298200 BJ298200 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl23m10 3', mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 485 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 532
>gb|BJ301413.1|BJ301413 BJ301413 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd10g23 5', mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 548 cccttgaatggtgtcttgcc 567
||||||||||||||||||||
Sbjct: 651 cccttgaatggtgtcttgcc 632
>gb|BJ307216.1|BJ307216 BJ307216 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd10g23 3', mRNA sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 548 cccttgaatggtgtcttgcc 567
||||||||||||||||||||
Sbjct: 434 cccttgaatggtgtcttgcc 453
>gb|BQ235990.1|BQ235990 TaE05039H01F TaE05 Triticum aestivum cDNA clone TaE05039H01F, mRNA
sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 532 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 579
>gb|BQ802609.1|BQ802609 WHE2827_H09_P17ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2827_H09_P17, mRNA
sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 324 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 277
>gb|BQ902847.1|BQ902847 Ta03_02d07_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_02d07, mRNA
sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaaggg 381
|||| ||||||||||| ||| |||||||||||
Sbjct: 232 atcagggcccagttcacgccctcaaagaaggg 201
>gb|CA502462.1|CA502462 WHE4047_G09_N17ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4047_G09_N17, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 548 cccttgaatggtgtcttgcc 567
||||||||||||||||||||
Sbjct: 556 cccttgaatggtgtcttgcc 537
>gb|CA630872.1|CA630872 wle1n.pk0039.c1 wle1n Triticum aestivum cDNA clone wle1n.pk0039.c1
5' end, mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 145 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 98
>gb|CD877511.1|CD877511 AZO4.100H12R011121 AZO4 Triticum aestivum cDNA clone AZO4100H12,
mRNA sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
||||| |||||||| | ||||||||||| || ||| ||||||| || ||||||||
Sbjct: 379 atcaatgcccagttaacaccttcaaagaatgggtgctgcttaatttctgtggctcc 434
>gb|CD923234.1|CD923234 G750.107E22F010529 G750 Triticum aestivum cDNA clone G750107E22,
mRNA sequence
Length = 539
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 548 cccttgaatggtgtcttgcc 567
||||||||||||||||||||
Sbjct: 231 cccttgaatggtgtcttgcc 212
>gb|CK153534.1|CK153534 FGAS032161 Triticum aestivum FGAS: TaLt2 Triticum aestivum cDNA,
mRNA sequence
Length = 910
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 644 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 691
>gb|CK153576.1|CK153576 FGAS032211 Triticum aestivum FGAS: TaLt2 Triticum aestivum cDNA,
mRNA sequence
Length = 870
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 645 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 692
>gb|CK153636.1|CK153636 FGAS032281 Triticum aestivum FGAS: TaLt2 Triticum aestivum cDNA,
mRNA sequence
Length = 854
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 645 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 692
>gb|CK207510.1|CK207510 FGAS019134 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1128
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 824 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 777
>gb|CK209115.1|CK209115 FGAS020858 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1187
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcc 405
||||| |||||||| | |||||||||||||| ||| |||| || || ||||||||
Sbjct: 255 atcaatgcccagttaacaccttcaaagaaggggtgctgctttatttctgtggctcc 310
>gb|CN012003.1|CN012003 WHE3891_D11_G21ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3891_D11_G21,
mRNA sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 355 ggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggc 402
||||||||||| ||| || |||||||| ||| |||| ||||| |||||
Sbjct: 622 ggcccagttcacgccctcgaagaaggggtgctgctttatctccgtggc 575
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,502
Number of Sequences: 636343
Number of extensions: 89502
Number of successful extensions: 24516
Number of sequences better than 0.5: 42
Number of HSP's better than 0.5 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24429
Number of HSP's gapped (non-prelim): 79
length of query: 578
length of database: 367,240,239
effective HSP length: 19
effective length of query: 559
effective length of database: 355,149,722
effective search space: 198528694598
effective search space used: 198528694598
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)