BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ322436.1|BJ322436 BJ322436 Y. Ogihara unpublished cDNA... 172 2e-041
gb|BJ302920.1|BJ302920 BJ302920 Y. Ogihara unpublished cDNA... 163 2e-038
gb|BJ303072.1|BJ303072 BJ303072 Y. Ogihara unpublished cDNA... 163 2e-038
gb|BJ308775.1|BJ308775 BJ308775 Y. Ogihara unpublished cDNA... 163 2e-038
gb|BJ308919.1|BJ308919 BJ308919 Y. Ogihara unpublished cDNA... 163 2e-038
gb|BE492089.1|BE492089 WHE0551_D10_D10ZE Triticum monococcu... 159 3e-037
gb|BE445402.1|BE445402 WHE1136_D04_H08ZS Wheat etiolated se... 147 1e-033
gb|BJ306754.1|BJ306754 BJ306754 Y. Ogihara unpublished cDNA... 147 1e-033
gb|BJ321866.1|BJ321866 BJ321866 Y. Ogihara unpublished cDNA... 147 1e-033
gb|CA608442.1|CA608442 wr1.pk0088.c8 wr1 Triticum aestivum ... 147 1e-033
gb|CA627543.1|CA627543 wdr1.pk0002.c6 wdr1 Triticum aestivu... 147 1e-033
gb|BG604505.1|BG604505 WHE0834_E01_I02ZS Wheat vernalized c... 135 4e-030
gb|BE419036.1|BE419036 WWR018.C1R000101 ITEC WWR Wheat Root... 68 8e-010
gb|BE444321.1|BE444321 WHE1117_G08_M15ZS Wheat etiolated se... 68 8e-010
gb|CD452662.1|CD452662 WHE1117_G08_M15ZT CS wheat etiolated... 68 8e-010
gb|CK200074.1|CK200074 FGAS008581 Triticum aestivum FGAS: L... 58 8e-007
gb|BJ308742.1|BJ308742 BJ308742 Y. Ogihara unpublished cDNA... 46 0.003
gb|CD867975.1|CD867975 AZO2.107L04F001113 AZO2 Triticum aes... 46 0.003
>gb|BJ322436.1|BJ322436 BJ322436 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf25e04 3', mRNA sequence
Length = 647
Score = 172 bits (87), Expect = 2e-041
Identities = 215/258 (83%), Gaps = 6/258 (2%)
Strand = Plus / Plus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgcc------gtcgtcgcc 367
||||||||||||| ||| ||||| || ||||| ||||||||||| |||||||||
Sbjct: 206 gaaggtccagttgacgaacatgaaggcgaggcagtgcggggcgcccgccacgtcgtcgcc 265
Query: 368 caccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgca 427
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 caccaccttccacgccaccgcctgctcgtacgacgcctgccgccccatgctcgacttgca 325
Query: 428 cacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcggacag 487
||| ||||| ||||||||||| | ||||||||||||| | || || || || ||||
Sbjct: 326 caccccaccagggaggtacgcgaaaccctgctgcatgaccttggagaactcggcacacag 385
Query: 488 ggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttcaccat 547
|||||| | ||||| ||||| |||| | ||||||||| | |||||| | ||||||||
Sbjct: 386 ggccttgcgcccctcgtcgtccaggatcacctccagcgagatgtcctgcaggttcaccag 445
Query: 548 cgtcgtctccaggatgtc 565
||||||||||| |||||
Sbjct: 446 agtcgtctccagcatgtc 463
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 606 ggcttcagagagcagcagagtatcgcgtc 634
|||||||||||||||||||||||||||||
Sbjct: 501 ggcttcagagagcagcagagtatcgcgtc 529
>gb|BJ302920.1|BJ302920 BJ302920 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd17f20 5', mRNA sequence
Length = 568
Score = 163 bits (82), Expect = 2e-038
Identities = 172/202 (85%)
Strand = Plus / Minus
Query: 358 cgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgc 417
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 561 cgtcgtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgc 502
Query: 418 tcgacctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagct 477
|||| |||||||||| || ||||||||||| | ||||||||||||| | || || ||
Sbjct: 501 tcgatttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaact 442
Query: 478 gcgcggacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctgga 537
||| |||| ||||| | ||||| ||||| |||| ||||||||||| | |||||| |
Sbjct: 441 cggcgcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgca 382
Query: 538 tgttcaccatcgtcgtctccag 559
|||||||| ||||||||||||
Sbjct: 381 ggttcaccagcgtcgtctccag 360
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 606 ggcttcagagagcagcagagtatcgcgtcgc 636
||||||||||||||||||||||| |||||||
Sbjct: 316 ggcttcagagagcagcagagtatagcgtcgc 286
>gb|BJ303072.1|BJ303072 BJ303072 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd18a04 5', mRNA sequence
Length = 623
Score = 163 bits (82), Expect = 2e-038
Identities = 172/202 (85%)
Strand = Plus / Minus
Query: 358 cgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgc 417
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 578 cgtcgtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgc 519
Query: 418 tcgacctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagct 477
|||| |||||||||| || ||||||||||| | ||||||||||||| | || || ||
Sbjct: 518 tcgatttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaact 459
Query: 478 gcgcggacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctgga 537
||| |||| ||||| | ||||| ||||| |||| ||||||||||| | |||||| |
Sbjct: 458 cggcgcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgca 399
Query: 538 tgttcaccatcgtcgtctccag 559
|||||||| ||||||||||||
Sbjct: 398 ggttcaccagcgtcgtctccag 377
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 606 ggcttcagagagcagcagagtatcgcgtcgc 636
||||||||||||||||||||||| |||||||
Sbjct: 333 ggcttcagagagcagcagagtatagcgtcgc 303
>gb|BJ308775.1|BJ308775 BJ308775 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd17f20 3', mRNA sequence
Length = 645
Score = 163 bits (82), Expect = 2e-038
Identities = 172/202 (85%)
Strand = Plus / Plus
Query: 358 cgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgc 417
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 285 cgtcgtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgc 344
Query: 418 tcgacctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagct 477
|||| |||||||||| || ||||||||||| | ||||||||||||| | || || ||
Sbjct: 345 tcgatttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaact 404
Query: 478 gcgcggacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctgga 537
||| |||| ||||| | ||||| ||||| |||| ||||||||||| | |||||| |
Sbjct: 405 cggcgcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgca 464
Query: 538 tgttcaccatcgtcgtctccag 559
|||||||| ||||||||||||
Sbjct: 465 ggttcaccagcgtcgtctccag 486
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 606 ggcttcagagagcagcagagtatcgcgtcgc 636
||||||||||||||||||||||| |||||||
Sbjct: 530 ggcttcagagagcagcagagtatagcgtcgc 560
>gb|BJ308919.1|BJ308919 BJ308919 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd18a04 3', mRNA sequence
Length = 650
Score = 163 bits (82), Expect = 2e-038
Identities = 172/202 (85%)
Strand = Plus / Plus
Query: 358 cgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgc 417
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 286 cgtcgtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgc 345
Query: 418 tcgacctgcacacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagct 477
|||| |||||||||| || ||||||||||| | ||||||||||||| | || || ||
Sbjct: 346 tcgatttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaact 405
Query: 478 gcgcggacagggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctgga 537
||| |||| ||||| | ||||| ||||| |||| ||||||||||| | |||||| |
Sbjct: 406 cggcgcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgca 465
Query: 538 tgttcaccatcgtcgtctccag 559
|||||||| ||||||||||||
Sbjct: 466 ggttcaccagcgtcgtctccag 487
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 606 ggcttcagagagcagcagagtatcgcgtcgc 636
||||||||||||||||||||||| |||||||
Sbjct: 531 ggcttcagagagcagcagagtatagcgtcgc 561
>gb|BE492089.1|BE492089 WHE0551_D10_D10ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0551_D10_D10, mRNA
sequence
Length = 506
Score = 159 bits (80), Expect = 3e-037
Identities = 199/239 (83%), Gaps = 6/239 (2%)
Strand = Plus / Minus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgcc------gtcgtcgcc 367
||||||||||||| ||| ||||| || ||||| ||||||||||| |||||||||
Sbjct: 253 gaaggtccagttgacgaacatgaaggcgaggcagtgcggggcgcccgccacgtcgtcgcc 194
Query: 368 caccaccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgca 427
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 193 caccaccttccacgccaccgcctgctcgtatgatgcctgccgccccatgctcgacttgca 134
Query: 428 cacgccaccggggaggtacgccaggccctgctgcatgatcgcggggagctgcgcggacag 487
|||||| |||||||||||||| | ||||||||||||| | || || || ||| ||||
Sbjct: 133 cacgcccccggggaggtacgcgaaaccctgctgcatgaccttggagaactcggcgcacag 74
Query: 488 ggccttctggccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttcacca 546
||||| | ||||| ||||| |||| ||||||||||| | |||||| | ||||||||
Sbjct: 73 cgccttgcgcccctcgtcgtccaggatcgcctccagcgagatgtcctgcaggttcacca 15
>gb|BE445402.1|BE445402 WHE1136_D04_H08ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1136_D04_H08,
mRNA sequence
Length = 329
Score = 147 bits (74), Expect = 1e-033
Identities = 134/154 (87%)
Strand = Plus / Plus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccaccac 373
||||| ||||||| ||| ||||| || ||||| ||||| ||| |||||||||||| |||
Sbjct: 126 gaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagcac 185
Query: 374 cttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgcc 433
|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 186 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgcc 245
Query: 434 accggggaggtacgccaggccctgctgcatgatc 467
|| ||||||||||| | |||||||||||||||
Sbjct: 246 gcccgggaggtacgcgaaaccctgctgcatgatc 279
>gb|BJ306754.1|BJ306754 BJ306754 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd5c13 3', mRNA sequence
Length = 669
Score = 147 bits (74), Expect = 1e-033
Identities = 134/154 (87%)
Strand = Plus / Plus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccaccac 373
||||| ||||||| ||| ||||| || ||||| ||||| ||| |||||||||||| |||
Sbjct: 177 gaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagcac 236
Query: 374 cttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgcc 433
|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 237 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgcc 296
Query: 434 accggggaggtacgccaggccctgctgcatgatc 467
|| ||||||||||| | |||||||||||||||
Sbjct: 297 gcccgggaggtacgcgaaaccctgctgcatgatc 330
>gb|BJ321866.1|BJ321866 BJ321866 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf22l02 3', mRNA sequence
Length = 653
Score = 147 bits (74), Expect = 1e-033
Identities = 134/154 (87%)
Strand = Plus / Plus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccaccac 373
||||| ||||||| ||| ||||| || ||||| ||||| ||| |||||||||||| |||
Sbjct: 177 gaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagcac 236
Query: 374 cttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgcc 433
|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 237 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgcc 296
Query: 434 accggggaggtacgccaggccctgctgcatgatc 467
|| ||||||||||| | |||||||||||||||
Sbjct: 297 gcccgggaggtacgcgaaaccctgctgcatgatc 330
>gb|CA608442.1|CA608442 wr1.pk0088.c8 wr1 Triticum aestivum cDNA clone wr1.pk0088.c8 5'
end, mRNA sequence
Length = 508
Score = 147 bits (74), Expect = 1e-033
Identities = 134/154 (87%)
Strand = Plus / Minus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccaccac 373
||||| ||||||| ||| ||||| || ||||| ||||| ||| |||||||||||| |||
Sbjct: 368 gaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagcac 309
Query: 374 cttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgcc 433
|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 308 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgcc 249
Query: 434 accggggaggtacgccaggccctgctgcatgatc 467
|| ||||||||||| | |||||||||||||||
Sbjct: 248 gcccgggaggtacgcgaaaccctgctgcatgatc 215
>gb|CA627543.1|CA627543 wdr1.pk0002.c6 wdr1 Triticum aestivum cDNA clone wdr1.pk0002.c6 5'
end, mRNA sequence
Length = 526
Score = 147 bits (74), Expect = 1e-033
Identities = 134/154 (87%)
Strand = Plus / Minus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccaccac 373
||||| ||||||| ||| ||||| || ||||| ||||| ||| |||||||||||| |||
Sbjct: 395 gaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagcac 336
Query: 374 cttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgcc 433
|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 335 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgcc 276
Query: 434 accggggaggtacgccaggccctgctgcatgatc 467
|| ||||||||||| | |||||||||||||||
Sbjct: 275 gcccgggaggtacgcgaaaccctgctgcatgatc 242
>gb|BG604505.1|BG604505 WHE0834_E01_I02ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0834_E01_I02, mRNA sequence
Length = 550
Score = 135 bits (68), Expect = 4e-030
Identities = 132/154 (85%)
Strand = Plus / Minus
Query: 314 gaaggtccagttggcgagcatgagcgccaggcactgcggggcgccgtcgtcgcccaccac 373
||||| ||||||| ||| ||||| || ||||| ||||| | | ||||||||||| |||
Sbjct: 402 gaaggaccagttgacgaacatgaaggcgaggcagtgcggcgngtngtcgtcgcccagcac 343
Query: 374 cttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacacgcc 433
|||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 342 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacgcc 283
Query: 434 accggggaggtacgccaggccctgctgcatgatc 467
|| ||||||||||| | |||||||||||||||
Sbjct: 282 gcccgggaggtacgcgaaaccctgctgcatgatc 249
>gb|BE419036.1|BE419036 WWR018.C1R000101 ITEC WWR Wheat Root Library Triticum aestivum cDNA
clone WWR018.C1, mRNA sequence
Length = 570
Score = 67.9 bits (34), Expect = 8e-010
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 353 ggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccc 412
||||||| ||||| | | ||||||||||||||| |||| | ||||||||||| |||| ||
Sbjct: 359 ggcgccgccgtcgtcgagcaccttccacgccaccgccttcccgtacgacgccggccggcc 300
Query: 413 catgctcgac 422
||||||||||
Sbjct: 299 catgctcgac 290
>gb|BE444321.1|BE444321 WHE1117_G08_M15ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_G08_M15,
mRNA sequence
Length = 425
Score = 67.9 bits (34), Expect = 8e-010
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 353 ggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccc 412
||||||| ||||| | | ||||||||||||||| |||| | ||||||||||| |||| ||
Sbjct: 376 ggcgccgccgtcgtcgagcaccttccacgccaccgccttcccgtacgacgccggccggcc 317
Query: 413 catgctcgac 422
||||||||||
Sbjct: 316 catgctcgac 307
>gb|CD452662.1|CD452662 WHE1117_G08_M15ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_G08_M15,
mRNA sequence
Length = 677
Score = 67.9 bits (34), Expect = 8e-010
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 353 ggcgccgtcgtcgcccaccaccttccacgccactgcctgctcgtacgacgcctgccgccc 412
||||||| ||||| | | ||||||||||||||| |||| | ||||||||||| |||| ||
Sbjct: 282 ggcgccgccgtcgtcgagcaccttccacgccaccgccttcccgtacgacgccggccggcc 341
Query: 413 catgctcgac 422
||||||||||
Sbjct: 342 catgctcgac 351
>gb|CK200074.1|CK200074 FGAS008581 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 811
Score = 58.0 bits (29), Expect = 8e-007
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 606 ggcttcagagagcagcagagtatcgcgtc 634
|||||||||||||||||||||||||||||
Sbjct: 618 ggcttcagagagcagcagagtatcgcgtc 590
Score = 40.1 bits (20), Expect = 0.18
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 498 ccctcctcgtcgaggaccgcctccagcggcaggtcctggatgttcaccatcgtcgtctcc 557
||||| ||||| |||| | ||||||||| | |||||| | |||||||| |||||||||
Sbjct: 723 ccctcgtcgtccaggatcacctccagcgagatgtcctgcaggttcaccagagtcgtctcc 664
Query: 558 aggatgtc 565
|| |||||
Sbjct: 663 agcatgtc 656
>gb|BJ308742.1|BJ308742 BJ308742 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd17d11 3', mRNA sequence
Length = 719
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 371 caccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacac 430
||||||||||||||| ||||| ||| | ||| | ||||| ||||| | |||| |||||||
Sbjct: 208 caccttccacgccacggcctggtcgaaggacacgtgccggcccatccccgacatgcacac 267
Query: 431 gcc 433
|||
Sbjct: 268 gcc 270
>gb|CD867975.1|CD867975 AZO2.107L04F001113 AZO2 Triticum aestivum cDNA clone AZO2107L04,
mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.003
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 371 caccttccacgccactgcctgctcgtacgacgcctgccgccccatgctcgacctgcacac 430
||||||||||||||| ||||| ||| | ||| | ||||| ||||| | |||| |||||||
Sbjct: 237 caccttccacgccacggcctggtcgaaggacacgtgccggcccatccccgacatgcacac 178
Query: 431 gcc 433
|||
Sbjct: 177 gcc 175
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 158,893
Number of Sequences: 636343
Number of extensions: 158893
Number of successful extensions: 46108
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46062
Number of HSP's gapped (non-prelim): 46
length of query: 636
length of database: 367,240,239
effective HSP length: 19
effective length of query: 617
effective length of database: 355,149,722
effective search space: 219127378474
effective search space used: 219127378474
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)