BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594405.2.1
(637 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD922964.1|CD922964 G750.105M21F010531 G750 Triticum aes... 242 2e-062
gb|BJ255955.1|BJ255955 BJ255955 Y. Ogihara unpublished cDNA... 222 2e-056
gb|BJ261484.1|BJ261484 BJ261484 Y. Ogihara unpublished cDNA... 222 2e-056
gb|CD874374.1|CD874374 AZO3.102A07R011123 AZO3 Triticum aes... 222 2e-056
gb|CD908042.1|CD908042 G468.108M11R010929 G468 Triticum aes... 222 2e-056
gb|CD917599.1|CD917599 G608.106A04F010906 G608 Triticum aes... 222 2e-056
gb|CD877189.1|CD877189 AZO4.002F04R011211 AZO4 Triticum aes... 196 1e-048
gb|CD880228.1|CD880228 F1.001B18F001129 F1 Triticum aestivu... 180 8e-044
gb|BE405075.1|BE405075 WHE1215_F07_L13ZS Wheat etiolated se... 147 1e-033
gb|BQ161640.1|BQ161640 WHE0463-0466_I07_I07ZT Wheat Fusariu... 98 9e-019
gb|CD908041.1|CD908041 G468.108M11F010814 G468 Triticum aes... 68 8e-010
>gb|CD922964.1|CD922964 G750.105M21F010531 G750 Triticum aestivum cDNA clone G750105M21,
mRNA sequence
Length = 610
Score = 242 bits (122), Expect = 2e-062
Identities = 263/310 (84%)
Strand = Plus / Minus
Query: 323 gcaaggtacctcctgccagcctcgttgattgtcccatcagcatcgaccagatgggcgtgc 382
||||||||||| ||||| | |||||||||||| ||||||||||||||||| || || ||
Sbjct: 453 gcaaggtaccttctgccggtctcgttgattgttccatcagcatcgaccaggtgagcatga 394
Query: 383 tctcgaaacataaacatctcccagaatccccagaggatgattccccccacagcaggatgt 442
| |||||||| ||| ||||||||||||||||||||| | ||| ||||||| | |||
Sbjct: 393 ttccgaaacatgaacgtctcccagaatccccagaggaccaccccctccacagcggcatgg 334
Query: 443 gcaaatgcttcccggaggaacacctctagatcatcagctcgtatgtgctcgttctctgct 502
|| || ||| |||||| ||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 333 gcgaagcattcacggaggcacacctcgagatcatccgctcggatgtgttcgttctccgcc 274
Query: 503 gtgacatccaactcagtaatccagatcgggagacccagtatggcgagcttgtccagggaa 562
| |||||||| |||||||||||||| |||||||||||||| || |||||||| || |||
Sbjct: 273 gagacatccagttcagtaatccagatagggagacccagtatagctagcttgtctagagaa 214
Query: 563 tcacatatgatttctcctaccggatggctgatatgaccttgcacaccgatcccaccaact 622
|| || ||||| ||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 213 tcgcagatgatatctcccactggatggctgatatgaccttgcacgccgatcccaccaact 154
Query: 623 ggagcgcccc 632
|| |||||||
Sbjct: 153 ggggcgcccc 144
>gb|BJ255955.1|BJ255955 BJ255955 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh3c11 5', mRNA sequence
Length = 666
Score = 222 bits (112), Expect = 2e-056
Identities = 277/332 (83%)
Strand = Plus / Minus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 455 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 396
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 395 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 336
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 335 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 276
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 275 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 216
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatgacc 600
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 215 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatgacc 156
Query: 601 ttgcacaccgatcccaccaactggagcgcccc 632
|||||| ||||||||||||||||| |||||||
Sbjct: 155 ttgcacgccgatcccaccaactggggcgcccc 124
>gb|BJ261484.1|BJ261484 BJ261484 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh3c11 3', mRNA sequence
Length = 687
Score = 222 bits (112), Expect = 2e-056
Identities = 277/332 (83%)
Strand = Plus / Plus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 276 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 335
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 336 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 395
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 396 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 455
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 456 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 515
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatgacc 600
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 516 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatgacc 575
Query: 601 ttgcacaccgatcccaccaactggagcgcccc 632
|||||| ||||||||||||||||| |||||||
Sbjct: 576 ttgcacgccgatcccaccaactggggcgcccc 607
>gb|CD874374.1|CD874374 AZO3.102A07R011123 AZO3 Triticum aestivum cDNA clone AZO3102A07,
mRNA sequence
Length = 707
Score = 222 bits (112), Expect = 2e-056
Identities = 277/332 (83%)
Strand = Plus / Plus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 285 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 344
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 345 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 404
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 405 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 464
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 465 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 524
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatgacc 600
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 525 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatgacc 584
Query: 601 ttgcacaccgatcccaccaactggagcgcccc 632
|||||| ||||||||||||||||| |||||||
Sbjct: 585 ttgcacgccgatcccaccaactggggcgcccc 616
>gb|CD908042.1|CD908042 G468.108M11R010929 G468 Triticum aestivum cDNA clone G468108M11,
mRNA sequence
Length = 683
Score = 222 bits (112), Expect = 2e-056
Identities = 277/332 (83%)
Strand = Plus / Plus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 288 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 347
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 348 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 407
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 408 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 467
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 468 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 527
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatgacc 600
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 528 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatgacc 587
Query: 601 ttgcacaccgatcccaccaactggagcgcccc 632
|||||| ||||||||||||||||| |||||||
Sbjct: 588 ttgcacgccgatcccaccaactggggcgcccc 619
>gb|CD917599.1|CD917599 G608.106A04F010906 G608 Triticum aestivum cDNA clone G608106A04,
mRNA sequence
Length = 604
Score = 222 bits (112), Expect = 2e-056
Identities = 277/332 (83%)
Strand = Plus / Minus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 383 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 324
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 323 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 264
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 263 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 204
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 203 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 144
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatgacc 600
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 143 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatgacc 84
Query: 601 ttgcacaccgatcccaccaactggagcgcccc 632
|||||| ||||||||||||||||| |||||||
Sbjct: 83 ttgcacgccgatcccaccaactggggcgcccc 52
>gb|CD877189.1|CD877189 AZO4.002F04R011211 AZO4 Triticum aestivum cDNA clone AZO4002F04,
mRNA sequence
Length = 597
Score = 196 bits (99), Expect = 1e-048
Identities = 261/315 (82%)
Strand = Plus / Plus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 283 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 342
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 343 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 402
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 403 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 462
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 463 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 522
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatgacc 600
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 523 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatgacc 582
Query: 601 ttgcacaccgatccc 615
|||||| ||||||||
Sbjct: 583 ttgcacgccgatccc 597
>gb|CD880228.1|CD880228 F1.001B18F001129 F1 Triticum aestivum cDNA clone F1001B18, mRNA
sequence
Length = 692
Score = 180 bits (91), Expect = 8e-044
Identities = 234/279 (83%), Gaps = 2/279 (0%)
Strand = Plus / Minus
Query: 356 ccatcagcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatc-ccca 414
||||||||||||| ||| || || || | |||||||| ||| |||||||||||| ||||
Sbjct: 689 ccatcagcatcgagcaggtgagcatgattccgaaacatgaacgtctcccagaatcnccca 630
Query: 415 gaggatgattcccc-ccacagcaggatgtgcaaatgcttcccggaggaacacctctagat 473
||||| || |||| ||||||| | ||| || || ||| |||||| ||||||| ||||
Sbjct: 629 gaggaccatccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagat 570
Query: 474 catcagctcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcggga 533
|||| ||||| ||||| |||||||| || | |||||||| |||||||||||||| ||||
Sbjct: 569 catccgctcggatgtgttcgttctccgccgagacatccagttcagtaatccagataggga 510
Query: 534 gacccagtatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctga 593
||| |||||| || |||||||| || ||||| || ||||| ||||| || ||||||||||
Sbjct: 509 gactcagtatagctagcttgtctagagaatcgcagatgatatctcccactggatggctga 450
Query: 594 tatgaccttgcacaccgatcccaccaactggagcgcccc 632
||||||||||||| ||||||||||||||||| |||||||
Sbjct: 449 tatgaccttgcacgccgatcccaccaactggggcgcccc 411
>gb|BE405075.1|BE405075 WHE1215_F07_L13ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE1215_F07_L13, mRNA
sequence
Length = 552
Score = 147 bits (74), Expect = 1e-033
Identities = 242/298 (81%)
Strand = Plus / Minus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 298 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 239
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || | || | || |||| ||| |||||||||| ||||||||||
Sbjct: 238 agcatcgaccaggtgagtatgattccgccacatgaacgtctcccagaacccccagaggac 179
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || ||| |||||| ||||||| |||||||| ||
Sbjct: 178 caccccctccacagcggcatgggcgaagcattcacggaggcacacctcgagatcatccgc 119
Query: 481 tcgtatgtgctcgttctctgctgtgacatccaactcagtaatccagatcgggagacccag 540
||| ||||| |||||||| || | |||||||| ||||| ||||| || |||||||||||
Sbjct: 118 tcggatgtgttcgttctccgccgagacatccagttcagtgatccaaatagggagacccag 59
Query: 541 tatggcgagcttgtccagggaatcacatatgatttctcctaccggatggctgatatga 598
||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||
Sbjct: 58 tatcgctagcttatctagagaatcacagatgatatctcccactggatggctgatatga 1
>gb|BQ161640.1|BQ161640 WHE0463-0466_I07_I07ZT Wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
WHE0463-0466_I07_I07, mRNA sequence
Length = 557
Score = 97.6 bits (49), Expect = 9e-019
Identities = 155/189 (82%), Gaps = 1/189 (0%)
Strand = Plus / Plus
Query: 301 ggtcagccactcttgtttgagagcaaggtacctcctgccagcctcgttgattgtcccatc 360
||||| |||||| || || |||||||||||||| |||| | |||||||||||| |||||
Sbjct: 370 ggtcaaccactcctgcttcagagcaaggtaccttttgccggtctcgttgattgttccatc 429
Query: 361 agcatcgaccagatgggcgtgctctcgaaacataaacatctcccagaatccccagaggat 420
|||||||||||| || || || | |||||||| ||| |||||||||| ||||||||||
Sbjct: 430 agcatcgaccaggtgagcatgattccgaaacatgaacgtctcccagaacccccagaggac 489
Query: 421 gattccccccacagcaggatgtgcaaatgcttcccggaggaacacctctagatcatcagc 480
| ||| ||||||| | ||| || || || || |||||| ||||||| |||||||| ||
Sbjct: 490 caccccctccacagcggcatgggcgaa-gcatcacggaggcacacctcgagatcatccgc 548
Query: 481 tcgtatgtg 489
||| |||||
Sbjct: 549 tcggatgtg 557
>gb|CD908041.1|CD908041 G468.108M11F010814 G468 Triticum aestivum cDNA clone G468108M11,
mRNA sequence
Length = 666
Score = 67.9 bits (34), Expect = 8e-010
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 591 tgatatgaccttgcacaccgatcccaccaactggagcgcccc 632
|||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 666 tgatatgaccttgcacgccgatcccaccaactggggcgcccc 625
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,532
Number of Sequences: 636343
Number of extensions: 97532
Number of successful extensions: 24123
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24095
Number of HSP's gapped (non-prelim): 28
length of query: 637
length of database: 367,240,239
effective HSP length: 19
effective length of query: 618
effective length of database: 355,149,722
effective search space: 219482528196
effective search space used: 219482528196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)