BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK211338.1|CK211338 FGAS023176 Triticum aestivum FGAS: L... 222 3e-056
gb|CK208141.1|CK208141 FGAS019822 Triticum aestivum FGAS: L... 206 2e-051
gb|CD490362.1|CD490362 WHE2497_A05_B09ZT Triticum monococcu... 196 1e-048
gb|CA623636.1|CA623636 wl1n.pk0112.d2 wl1n Triticum aestivu... 107 1e-021
gb|CA631869.1|CA631869 wle1n.pk0055.h6 wle1n Triticum aesti... 105 4e-021
gb|CD928060.1|CD928060 GR45.103O08F010315 GR45 Triticum aes... 66 4e-009
gb|CK196562.1|CK196562 FGAS005021 Triticum aestivum FGAS: L... 42 0.052
gb|BQ905539.1|BQ905539 Ta04_16h04_R Ta04_AAFC_ECORC_Fusariu... 40 0.20
>gb|CK211338.1|CK211338 FGAS023176 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1056
Score = 222 bits (112), Expect = 3e-056
Identities = 240/280 (85%), Gaps = 2/280 (0%)
Strand = Plus / Plus
Query: 425 gtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcctgttgccc 484
|||||||||||||| ||||||||||||||||||| ||| ||||||||||| | | ||||
Sbjct: 309 gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 368
Query: 485 agctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccacgcccgcc 544
||||||||| | ||||| |||||| |||||||||||||| ||||||||||| ||| |||
Sbjct: 369 agctcgtccgccacgctcaggtccctgcacacgtccaccctgaacgccaccgtgccggcc 428
Query: 545 tgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgcgttgggc 604
| ||||||| ||||||||||||| ||||| || |||||| ||||||||||||||||| ||
Sbjct: 429 tccccgggcgccagcgacaccttctcgaacccgagcaggtgcttcgccggcgcgttgtgc 488
Query: 605 accgccggcggcgacgagaacaggaacaccgtgggcccgccggac-cttctgcccgcgtt 663
||| |||||||||||||||||| | ||||| | || |||||| | | || ||| |||||
Sbjct: 489 gccgacggcggcgacgagaacagcagcaccgagtgcgcgccggccacctc-gccggcgtt 547
Query: 664 ccgcacccggaggggcacgttgaacgccaggccctcgcag 703
|||||||||||| ||||| ||| |||||| ||||||||
Sbjct: 548 ccgcacccggagcttcacgtcgaaggccaggtcctcgcag 587
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 cccgtggatccaattctttc 269
||||||||||||||||||||
Sbjct: 129 cccgtggatccaattctttc 148
>gb|CK208141.1|CK208141 FGAS019822 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1134
Score = 206 bits (104), Expect = 2e-051
Identities = 238/280 (85%), Gaps = 2/280 (0%)
Strand = Plus / Plus
Query: 425 gtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcctgttgccc 484
|||||||||||||| ||||||||||||||||||| ||| ||||||||||| | | ||||
Sbjct: 290 gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 349
Query: 485 agctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccacgcccgcc 544
||||||||| | ||||| |||||| |||||||||||||| ||||||||||| ||| |||
Sbjct: 350 agctcgtccgccacgctcaggtccctgcacacgtccaccctgaacgccaccgtgccggcc 409
Query: 545 tgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgcgttgggc 604
| ||||||| ||||||||||||| ||||| || |||||| ||||||||||||||||| ||
Sbjct: 410 tccccgggcgccagcgacaccttctcgaacccgagcaggtgcttcgccggcgcgttgtgc 469
Query: 605 accgccggcggcgacgagaacaggaacaccgtgggcccgccggac-cttctgcccgcgtt 663
||| |||||||||||| ||||| | ||||| | || |||||| | | || ||| | |||
Sbjct: 470 gccgacggcggcgacgaaaacagcagcaccgagtgcgcgccggccacctc-gccggggtt 528
Query: 664 ccgcacccggaggggcacgttgaacgccaggccctcgcag 703
|||||||||||| ||||| ||| |||||| ||||||||
Sbjct: 529 ccgcacccggagcttcacgtcgaaggccaggtcctcgcag 568
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 cccgtggatccaattctttc 269
||||||||||||||||||||
Sbjct: 110 cccgtggatccaattctttc 129
>gb|CD490362.1|CD490362 WHE2497_A05_B09ZT Triticum monococcum DV92 early reproductive apex
cDNA library Triticum monococcum cDNA clone
WHE2497_A05_B09, mRNA sequence
Length = 705
Score = 196 bits (99), Expect = 1e-048
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 425 gtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcctgttgccc 484
|||||||||||||| || |||||||||||||||| ||| ||||||||||| | | ||||
Sbjct: 295 gtgtgcttgaggtcgccaacgtgcagcgtgtggccgccgagcgccaccttgcggccgccc 354
Query: 485 agctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccacgcccgcc 544
||||||||| | ||||| |||||| ||||||||||||| ||||||||||| ||| |||
Sbjct: 355 agctcgtccgccacgctcaggtccctgcacacgtccactctgaacgccaccgtgccggcc 414
Query: 545 tgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgcgttgggc 604
| ||||||| ||||||||||||| ||||| || |||||| ||||||||||||||||| ||
Sbjct: 415 tccccgggcgccagcgacaccttctcgaacccgagcaggtgcttcgccggcgcgttgtgc 474
Query: 605 accgccggcggcgacgagaacag 627
||| ||||||||||||||||||
Sbjct: 475 gccgacggcggcgacgagaacag 497
>gb|CA623636.1|CA623636 wl1n.pk0112.d2 wl1n Triticum aestivum cDNA clone wl1n.pk0112.d2 5'
end, mRNA sequence
Length = 496
Score = 107 bits (54), Expect = 1e-021
Identities = 174/205 (84%), Gaps = 7/205 (3%)
Strand = Plus / Minus
Query: 515 acgtccaccttgaacgccaccacgcccgcctgcccgggctccagcg-acaccttttcgaa 573
|||||||| ||||| ||||| ||||| || |||| ||||||||| | |||| || | |||
Sbjct: 350 acgtccacnttgaaagccacaacgcc-gcttgccggggctccaggggacactttctggaa 292
Query: 574 gcccagcaggggcttcgccgg-cgcgttgggcacc-gccgg-cggcgacgagaacaggaa 630
||||||| || |||||||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 291 gcccagccaggtgttcgccgggcgcgttgtgcacccgccgggcggcgacgagaacaggaa 232
Query: 631 caccgtgggcccgccggaccttctgcccgcgttccgc-acccggaggggcacgttgaacg 689
||||||| ||||||||||||| ||||| ||||| ||||||||| |||||| |||||
Sbjct: 231 caccgtgtgcccgccggacctctcgcccggcgtccgcaacccggaggtgcacgtcgaacg 172
Query: 690 ccaggccc-tcgcagagcgcgccct 713
|||||||| |||||| |||||||||
Sbjct: 171 ccaggcccttcgcagtgcgcgccct 147
>gb|CA631869.1|CA631869 wle1n.pk0055.h6 wle1n Triticum aestivum cDNA clone wle1n.pk0055.h6
5' end, mRNA sequence
Length = 475
Score = 105 bits (53), Expect = 4e-021
Identities = 98/112 (87%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 425 gtgtgcttgaggtccccgacgtgcagcgtgtggctgccca-gcgccaccttcctgttgcc 483
|||||||||||||| ||||||||||||||||||| ||| | |||||||||| | | |||
Sbjct: 263 gtgtgcttgaggtcgccgacgtgcagcgtgtggccgccgaagcgccaccttgcggccgcc 322
Query: 484 cagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccacc 535
|||||||||| | ||||| | |||| |||||||||||||| |||||||||||
Sbjct: 323 cagctcgtccgccacgctcangtccctgcacacgtccaccctgaacgccacc 374
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 cccgtggatccaattctttc 269
||||||||||||||||||||
Sbjct: 84 cccgtggatccaattctttc 103
>gb|CD928060.1|CD928060 GR45.103O08F010315 GR45 Triticum aestivum cDNA clone GR45103O08,
mRNA sequence
Length = 109
Score = 65.9 bits (33), Expect = 4e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 425 gtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccacct 473
|||||||||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct: 61 gtgtgcttgaggtcgccgacgtgcagcgtgtgaccgccgagcgccacct 109
>gb|CK196562.1|CK196562 FGAS005021 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 857
Score = 42.1 bits (21), Expect = 0.052
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 659 gcgttccgcacccggaggggcacgttgaacgccaggccctcgcag 703
||||||||||||||||| ||||| ||| |||||| ||||||||
Sbjct: 599 gcgttccgcacccggagcttcacgtcgaaggccaggtcctcgcag 555
>gb|BQ905539.1|BQ905539 Ta04_16h04_R
Ta04_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta04_16h04, mRNA
sequence
Length = 246
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250 cccgtggatccaattctttc 269
||||||||||||||||||||
Sbjct: 139 cccgtggatccaattctttc 158
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 184,696
Number of Sequences: 636343
Number of extensions: 184696
Number of successful extensions: 48759
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48741
Number of HSP's gapped (non-prelim): 15
length of query: 715
length of database: 367,240,239
effective HSP length: 19
effective length of query: 696
effective length of database: 355,149,722
effective search space: 247184206512
effective search space used: 247184206512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)