BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591368.2.1
(543 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN013072.1|CN013072 WHE3956_D11_G22ZS Wheat Fusarium gra... 190 7e-047
gb|CA500522.1|CA500522 WHE4020_G10_N20ZT Wheat meiotic anth... 184 4e-045
gb|U42336.1|TAU42336 Triticum aestivum ACC synthase (TA-ACS... 178 3e-043
gb|CD373768.1|CD373768 WHE2601_G01_M01ZT Sumai3 Wheat Fusar... 137 9e-031
gb|BE401232.1|BE401232 CNW01PL0232 ITEC CNW Wheat Powdery M... 135 3e-030
gb|BJ318186.1|BJ318186 BJ318186 Y. Ogihara unpublished cDNA... 100 2e-019
emb|AX660727.1| Sequence 1084 from Patent WO03000906 98 8e-019
gb|CD492161.1|CD492161 WHE2478_C06_F12ZT Triticum monococcu... 74 1e-011
gb|BM135527.1|BM135527 WHE2601_G01_M01ZS Wheat Fusarium gra... 70 2e-010
gb|CA647004.1|CA647004 wre1n.pk0110.b5 wre1n Triticum aesti... 40 0.15
>gb|CN013072.1|CN013072 WHE3956_D11_G22ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3956_D11_G22,
mRNA sequence
Length = 695
Score = 190 bits (96), Expect = 7e-047
Identities = 179/204 (87%), Gaps = 2/204 (0%)
Strand = Plus / Minus
Query: 339 ggcgcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgc 398
||||| ||| ||||||| ||||| ||| | |||| |||||||||| |||||||||||| |
Sbjct: 225 ggcgctgcaggctgaggtggaggtgccccctggcggcccagcgctgggccttggcctt-c 167
Query: 399 tg-tgctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcg 457
|| ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |||
Sbjct: 166 tgctgctggtgctggcgcacgaagtcccggatccggctcagcgccacccccatggtctcg 107
Query: 458 tcgtccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtg 517
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 106 tcgtccatgttggcgtggcagacgcggaaccacccgggctcgccgcagtggaacgacgtc 47
Query: 518 ccgggcgacacgttgagcttcacc 541
|| |||||||||||||||||||||
Sbjct: 46 cccggcgacacgttgagcttcacc 23
>gb|CA500522.1|CA500522 WHE4020_G10_N20ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4020_G10_N20, mRNA sequence
Length = 637
Score = 184 bits (93), Expect = 4e-045
Identities = 176/201 (87%), Gaps = 2/201 (0%)
Strand = Plus / Minus
Query: 339 ggcgcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgc 398
||||| ||| ||||||| ||||| ||| | |||| |||||||||| |||||||||||| |
Sbjct: 211 ggcgctgcaggctgaggtggaggtgccccctggcggcccagcgctgggccttggcctt-c 153
Query: 399 tg-tgctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcg 457
|| ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |||
Sbjct: 152 tgctgctggtgctggcgcacgaagtcccggatccggctcagcgccacccccatggtctcg 93
Query: 458 tcgtccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtg 517
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 92 tcgtccatgttggcgtggcagacgcggaaccacccgggctcgccgcagtggaacgacgtc 33
Query: 518 ccgggcgacacgttgagcttc 538
|| ||||||||||||||||||
Sbjct: 32 cccggcgacacgttgagcttc 12
>gb|U42336.1|TAU42336 Triticum aestivum ACC synthase (TA-ACS2) gene, complete cds
Length = 5590
Score = 178 bits (90), Expect = 3e-043
Identities = 155/174 (89%), Gaps = 2/174 (1%)
Strand = Plus / Minus
Query: 369 tggccgcccagcgctcggccttggccttgctg-tgctggtgctggcgcacgaagcggcgg 427
|||| |||||||||| |||||||||||| ||| ||||||||||||||||||||| |||
Sbjct: 2853 tggcggcccagcgctgggccttggcctt-ctgctgctggtgctggcgcacgaagtcccgg 2795
Query: 428 atccggtcgagcgcgacctccatggtgtcgtcgtccatgttggcgtagcagacgcggaac 487
|||||| ||||| ||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 2794 atccggctcagcgccacccccatggtctcgtcgtccatgttggcgtggcagacgcggaac 2735
Query: 488 cagccgggctcgttgcagtggaacgacgtgccgggcgacacgttgagcttcacc 541
|| ||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 2734 cacccgggctcgccgcagtggaacgacgtccccggcgacacgttgagcttcacc 2681
>gb|CD373768.1|CD373768 WHE2601_G01_M01ZT Sumai3 Wheat Fusarium graminearum infected spike
cDNA library Triticum aestivum cDNA clone
WHE2601_G01_M01, mRNA sequence
Length = 724
Score = 137 bits (69), Expect = 9e-031
Identities = 131/149 (87%), Gaps = 2/149 (1%)
Strand = Plus / Plus
Query: 369 tggccgcccagcgctcggccttggccttgctg-tgctggtgctggcgcacgaagcggcgg 427
|||| |||||||||| |||||||||||| ||| ||||||||||||||||||||| |||
Sbjct: 569 tggcggcccagcgctgggccttggcctt-ctgctgctggtgctggcgcacgaagtcccgg 627
Query: 428 atccggtcgagcgcgacctccatggtgtcgtcgtccatgttggcgtagcagacgcggaac 487
|||||| ||||| ||| ||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 628 atccggctcagcgccacccccatggtctcgtcgtccatgttggcgtggcagacgcggaaa 687
Query: 488 cagccgggctcgttgcagtggaacgacgt 516
|| ||||||||| |||||||||||||||
Sbjct: 688 cacccgggctcgccgcagtggaacgacgt 716
>gb|BE401232.1|BE401232 CNW01PL0232 ITEC CNW Wheat Powdery Mildew Resistant Library
Triticum aestivum cDNA clone CNW01PL0232, mRNA sequence
Length = 300
Score = 135 bits (68), Expect = 3e-030
Identities = 148/171 (86%), Gaps = 3/171 (1%)
Strand = Plus / Minus
Query: 369 tggccgcccagcgctcggccttggccttgctg-tgctggtgctggcgcacgaagcggcgg 427
|||| ||||||| || ||| |||||||| ||| ||| ||||||||||||||||| |||
Sbjct: 231 tggcggcccagcactgggctttggcctt-ctgctgccggtgctggcgcacgaagtcccgg 173
Query: 428 atccggtcgagcgcgacctccatggtgtcgtcgtccatgttggcgtagcagacgcggaac 487
||||||| ||||| ||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 172 atccggttcagcgccacccccatggtctcgtcgtccatgttggcgt-gcagacgcggaac 114
Query: 488 cagccgggctcgttgcagtggaacgacgtgccgggcgacacgttgagcttc 538
|| ||||||||| |||||| ||| |||| || ||||||||||||||||||
Sbjct: 113 canccgggctcgcggcagtgaaacaacgtccccggcgacacgttgagcttc 63
>gb|BJ318186.1|BJ318186 BJ318186 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf10g07 3', mRNA sequence
Length = 636
Score = 99.6 bits (50), Expect = 2e-019
Identities = 100/114 (87%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 369 tggccgcccagcgctcggccttggccttgctg-tgctggtgctggcgcacgaagcggcgg 427
|||| |||||||||| ||| |||||||| ||| ||||||||||||||||||||| |||
Sbjct: 524 tggcggcccagcgctgggctttggcctt-ctgctgctggtgctggcgcacgaagtcccgg 582
Query: 428 atccggtcgagcgcgacctccatggtgtcgtcgtccatgttggcgtagcagacg 481
||||||| ||||| ||| ||||||| ||||||||||||||||||| |||||||
Sbjct: 583 atccggttcagcgccacccccatggtctcgtcgtccatgttggcgtggcagacg 636
>emb|AX660727.1| Sequence 1084 from Patent WO03000906
Length = 691
Score = 97.6 bits (49), Expect = 8e-019
Identities = 143/165 (86%), Gaps = 7/165 (4%)
Strand = Plus / Minus
Query: 376 ccagcgctcggccttggccttgctg-tgctggtgctggcgcacgaagcggcggatccggt 434
|||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct: 159 ccagcgctgggccttggcctt-ctgctgctggtgctggcgcacgaagtcccggatccggc 101
Query: 435 cgagcgcgacctccatggtgtcgtcgtccatgttggcgtagcagacgcggaaccagccgg 494
||||| ||| ||||||| |||||||||||| |||||| |||||||||||| || ||||
Sbjct: 100 tcagcgccacccccatggtctcgtcgtccatg-tggcgtggcagacgcggaa-cacccgg 43
Query: 495 gctcgttgcagtggaacgacgtgccgggcgacacgttgagcttca 539
||||| |||| |||||||||| || || ||||||||||||||||
Sbjct: 42 gctcg-cgcag-ggaacgacgtccccgg-gacacgttgagcttca 1
>gb|CD492161.1|CD492161 WHE2478_C06_F12ZT Triticum monococcum DV92 early reproductive apex
cDNA library Triticum monococcum cDNA clone
WHE2478_C06_F12, mRNA sequence
Length = 720
Score = 73.8 bits (37), Expect = 1e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 364 catgttggcgaagcagacgcggaaccacccgggctcgctgcagtggcacgacg 416
>gb|BM135527.1|BM135527 WHE2601_G01_M01ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2601_G01_M01,
mRNA sequence
Length = 201
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 491 ccgggctcgttgcagtggaacgacgtgccgggcgacacgttgagcttcacc 541
||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct: 198 ccgggctcgccgcagtggaacgacgtccccggcgacacgttgagcttcacc 148
>gb|CA647004.1|CA647004 wre1n.pk0110.b5 wre1n Triticum aestivum cDNA clone wre1n.pk0110.b5
5' end, mRNA sequence
Length = 501
Score = 40.1 bits (20), Expect = 0.15
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 369 tggccgcccagcgctcggccttggcctt 396
|||| |||||||||| ||||||||||||
Sbjct: 30 tggcggcccagcgctgggccttggcctt 3
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,492
Number of Sequences: 636343
Number of extensions: 116492
Number of successful extensions: 34714
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34694
Number of HSP's gapped (non-prelim): 12
length of query: 543
length of database: 367,240,239
effective HSP length: 19
effective length of query: 524
effective length of database: 355,149,722
effective search space: 186098454328
effective search space used: 186098454328
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)