BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ306754.1|BJ306754 BJ306754 Y. Ogihara unpublished cDNA... 531 e-149
gb|BJ321866.1|BJ321866 BJ321866 Y. Ogihara unpublished cDNA... 507 e-142
gb|CA608442.1|CA608442 wr1.pk0088.c8 wr1 Triticum aestivum ... 450 e-125
gb|BG604505.1|BG604505 WHE0834_E01_I02ZS Wheat vernalized c... 446 e-123
gb|CA627543.1|CA627543 wdr1.pk0002.c6 wdr1 Triticum aestivu... 426 e-117
gb|CV762420.1|CV762420 FGAS056809 Triticum aestivum FGAS: L... 408 e-112
gb|BE445402.1|BE445402 WHE1136_D04_H08ZS Wheat etiolated se... 250 1e-064
gb|BM135820.1|BM135820 WHE2624_F04_L08ZS Wheat Fusarium gra... 186 2e-045
gb|BJ322436.1|BJ322436 BJ322436 Y. Ogihara unpublished cDNA... 157 2e-036
gb|BJ308775.1|BJ308775 BJ308775 Y. Ogihara unpublished cDNA... 149 4e-034
gb|BJ308919.1|BJ308919 BJ308919 Y. Ogihara unpublished cDNA... 149 4e-034
gb|BE492089.1|BE492089 WHE0551_D10_D10ZE Triticum monococcu... 141 9e-032
gb|BJ303072.1|BJ303072 BJ303072 Y. Ogihara unpublished cDNA... 141 9e-032
gb|BJ302920.1|BJ302920 BJ302920 Y. Ogihara unpublished cDNA... 139 4e-031
gb|CK200074.1|CK200074 FGAS008581 Triticum aestivum FGAS: L... 103 2e-020
gb|BE488969.1|BE488969 WHE1077_B05_D09ZS Wheat unstressed s... 84 2e-014
gb|BE419036.1|BE419036 WWR018.C1R000101 ITEC WWR Wheat Root... 70 3e-010
gb|BE444321.1|BE444321 WHE1117_G08_M15ZS Wheat etiolated se... 70 3e-010
gb|CD452662.1|CD452662 WHE1117_G08_M15ZT CS wheat etiolated... 70 3e-010
gb|CA639595.1|CA639595 wre1n.pk0024.h4 wre1n Triticum aesti... 54 2e-005
gb|BE402487.1|BE402487 CSB008E01F990908 ITEC CSB Wheat Endo... 40 0.25
gb|BJ218161.1|BJ218161 BJ218161 Y. Ogihara unpublished cDNA... 40 0.25
gb|BJ244534.1|BJ244534 BJ244534 Y. Ogihara unpublished cDNA... 40 0.25
gb|BJ308742.1|BJ308742 BJ308742 Y. Ogihara unpublished cDNA... 40 0.25
gb|BQ607870.1|BQ607870 BRY_3769 wheat EST endosperm library... 40 0.25
gb|CA484792.1|CA484792 WHE4310_G06_M12ZS Wheat meiotic anth... 40 0.25
gb|CA645124.1|CA645124 wre1n.pk0087.c11 wre1n Triticum aest... 40 0.25
gb|CA709633.1|CA709633 wdk2c.pk013.p4 wdk2c Triticum aestiv... 40 0.25
gb|CD867975.1|CD867975 AZO2.107L04F001113 AZO2 Triticum aes... 40 0.25
gb|DR735836.1|DR735836 FGAS016879 Triticum aestivum FGAS: L... 40 0.25
>gb|BJ306754.1|BJ306754 BJ306754 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd5c13 3', mRNA sequence
Length = 669
Score = 531 bits (268), Expect = e-149
Identities = 427/480 (88%)
Strand = Plus / Plus
Query: 208 acgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcagg 267
|||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 175 acgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagc 234
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 235 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacg 294
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| || |||||||||||||| ||||| ||||| ||||| ||| |||||| ||| ||||||
Sbjct: 295 ccgcccgggaggtacgcgaaaccctgctgcatgatcttggggaactcggagcacagcgcc 354
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtc 447
|| | ||| |||||||| ||||||||||| || |||||||||||||| || |||||||||
Sbjct: 355 ttgcggccgtcgtcgtcgaggatcttctcgagcgagatgtcctggagcgcgatcagcgtc 414
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagg 507
|||||||||||||| || ||||| || ||||| ||||||||||| |||||||||||||||
Sbjct: 415 gtctccagcatgtcgagcccggcctgattggcgaaggtgaacaccggagcagccttcagg 474
Query: 508 gaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccgtgcat 567
|||||||||||||| || |||||||| ||||||||||| |||| |||||| |||| ||
Sbjct: 475 gaacagcacatgattgaatccgagtgctgccacagcgccttcagggaagcgtccgcgctc 534
Query: 568 tgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctgccgatccac 627
|| | ||||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 535 tgtgactccgtgcataggagttccgccccagtgtgaaacctgtagctcctgccgatccac 594
Query: 628 cttgccagcgtgtgtgcctcaggagatcctggagtttgcttcatttcaagctgtccacca 687
|| || |||||||| ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 595 ctcgcaagcgtgtgagcctcaggagatcctggagggttcttcatttcaagctgtccacca 654
>gb|BJ321866.1|BJ321866 BJ321866 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf22l02 3', mRNA sequence
Length = 653
Score = 507 bits (256), Expect = e-142
Identities = 422/476 (88%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 208 acgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcagg 267
|||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 175 acgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagc 234
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 235 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacg 294
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| || |||||||||||||| ||||| ||||| ||||| ||| |||||| ||| ||||||
Sbjct: 295 ccgcccgggaggtacgcgaaaccctgctgcatgatcttggggaactcggagcacagcgcc 354
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtc 447
|| | ||| |||||||| ||||||||||| || |||||||||||||| || |||||||||
Sbjct: 355 ttgcggccgtcgtcgtcgaggatcttctcgagcgagatgtcctggagcgcgatcagcgtc 414
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagg 507
|||||||||||||| || ||||| || ||||| ||||||||||| |||||||||||||||
Sbjct: 415 gtctccagcatgtcgagcccggcctgattggcgaaggtgaacaccggagcagccttcagg 474
Query: 508 gaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccgtgcat 567
|||||||||||||| || |||||||| ||||||||||| |||| |||||| |||| ||
Sbjct: 475 gaacagcacatgattgaatccgagtgctgccacagcgccttcagggaagcgtccgcgctc 534
Query: 568 tgggtgtccgtgcggaggagttcggctccagtgtggaacctgtagctcctgccgatccac 627
|| | ||||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 535 tgtgactccgtgcataggagttccgccccagtgtgaaacctgtagctcctgccgatccac 594
Query: 628 cttgccagcgtgtgtgcctcaggagatcct-ggagtttgcttcatttcaagctgtc 682
|| || |||||||| ||||||||||||||| |||| | |||||||||||||||||
Sbjct: 595 ctcgcaagcgtgtgagcctcaggagatcctgggagggttcttcatttcaagctgtc 650
>gb|CA608442.1|CA608442 wr1.pk0088.c8 wr1 Triticum aestivum cDNA clone wr1.pk0088.c8 5'
end, mRNA sequence
Length = 508
Score = 450 bits (227), Expect = e-125
Identities = 323/355 (90%)
Strand = Plus / Minus
Query: 208 acgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcagg 267
|||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 370 acgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagc 311
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 310 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacg 251
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| || |||||||||||||| ||||| ||||| ||||| ||| |||||| ||| ||||||
Sbjct: 250 ccgcccgggaggtacgcgaaaccctgctgcatgatcttggggaactcggagcacagcgcc 191
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtc 447
|| | ||| |||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct: 190 ttgcggccgtcgtcgtcaaggatcttctcgagcgagatgtcctggagcgcgatcagcgtc 131
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagg 507
||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 130 gtctccagcatgtccagcccggcctggttggcgaaggtgaacaccggagcagccttcagg 71
Query: 508 gaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccg 562
|||||||||||||| || |||||||| |||||||||||||||| |||||| ||||
Sbjct: 70 gaacagcacatgattgaatccgagtgctgccacagcgctttcagggaagcgtccg 16
>gb|BG604505.1|BG604505 WHE0834_E01_I02ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0834_E01_I02, mRNA sequence
Length = 550
Score = 446 bits (225), Expect = e-123
Identities = 322/355 (90%)
Strand = Plus / Minus
Query: 208 acgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcagg 267
|||||||||||||| |||||||||||||| ||||||||||| | || |||||||| |||
Sbjct: 404 acgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgngtngtcgtcgcccagc 345
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 344 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacg 285
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| || |||||||||||||| ||||| ||||| ||||| ||| |||||| ||| ||||||
Sbjct: 284 ccgcccgggaggtacgcgaaaccctgctgcatgatcttggggaactcggagcacagcgcc 225
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtc 447
|| | ||| |||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct: 224 ttgcggccgtcgtcgtcaaggatcttctcgagcgagatgtcctggagcgcgatcagcgtc 165
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagg 507
||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 164 gtctccagcatgtccagcccggcctggttggcgaaggtgaacaccggagcagccttcagg 105
Query: 508 gaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccg 562
|||||||||||||| || |||||||| |||||||||||||||| |||||| ||||
Sbjct: 104 gaacagcacatgattgaatccgagtgctgccacagcgctttcagggaagcgtccg 50
>gb|CA627543.1|CA627543 wdr1.pk0002.c6 wdr1 Triticum aestivum cDNA clone wdr1.pk0002.c6 5'
end, mRNA sequence
Length = 526
Score = 426 bits (215), Expect = e-117
Identities = 321/355 (90%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 208 acgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcagg 267
|||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 397 acgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagc 338
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 337 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacg 278
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| || |||||||||||||| ||||| ||||| ||||| ||| |||||| ||||||| ||
Sbjct: 277 ccgcccgggaggtacgcgaaaccctgctgcatgatcttggggaactcggagcagagc-cc 219
Query: 388 ttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtc 447
|| | ||| |||||||||||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 218 ttgcggccgtcgtcgtcaaggatcttctcgagcgagatgtcttggagcgcgatcagcgtc 159
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagg 507
||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 158 gtctccagcatgtccagcccggcctggttggcgaaggtgaacacaggagcagccttcagg 99
Query: 508 gaacagcacatgatcgagtccgagtgttgccacagcgctttcaaggaagcatccg 562
|||||||||||||| || |||||||| ||||||||||| |||| |||||| ||||
Sbjct: 98 gaacagcacatgattgaatccgagtgctgccacagcgccttcagggaagcgtccg 44
>gb|CV762420.1|CV762420 FGAS056809 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 835
Score = 408 bits (206), Expect = e-112
Identities = 386/446 (86%)
Strand = Plus / Minus
Query: 397 tcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagc 456
|||||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||
Sbjct: 833 tcgtcgtcgaggatcttctcgagcgagatgtcctggagcgcgatcagcgtcgtctccagc 774
Query: 457 atgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagggaacagcac 516
||||| || ||||| || | | || ||||||||| ||||||||||||||||||||||||
Sbjct: 773 atgtcgagcccggcctgatggcgaagggtgaacaccggagcagccttcagggaacagcac 714
Query: 517 atgatcgagtccgagtgttgccacagcgctttcaaggaagcatccgtgcattgggtgtcc 576
||||| || |||||||| ||||||||||| |||| |||||| |||| || || | |||
Sbjct: 713 atgattgaatccgagtgctgccacagcgccttcagggaagcgtccgcgctctgtgactcc 654
Query: 577 gtgcggaggagttcggctccagtgtggaacctgtagctcctgccgatccaccttgccagc 636
|||| |||||||| || |||||||| |||||||||||||||||||||||||| || |||
Sbjct: 653 gtgcataggagttccgccccagtgtgaaacctgtagctcctgccgatccacctcgcaagc 594
Query: 637 gtgtgtgcctcaggagatcctggagtttgcttcatttcaagctgtccaccaatgcgcgaa 696
||||| ||||||||||||||||||| | |||||||||||||||||||||| ||| |||
Sbjct: 593 gtgtgagcctcaggagatcctggagggttcttcatttcaagctgtccaccagggcgggaa 534
Query: 697 ggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgcctg 756
|| ||||| |||||||| || ||||||||||||||||| || ||||| || || |||||
Sbjct: 533 ggggctatcgccatggccactctctgcaccgatgccacaacagtcctcacatactgcctc 474
Query: 757 gccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatggtc 816
||||| || || || |||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct: 473 gccattgccgcaacactctctcgaaggtggttctcatacgagaactggaaagcaatggta 414
Query: 817 agcactgatcttgtgttgcaggtgct 842
||||||||||||||||||| ||||||
Sbjct: 413 agcactgatcttgtgttgctggtgct 388
>gb|BE445402.1|BE445402 WHE1136_D04_H08ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1136_D04_H08,
mRNA sequence
Length = 329
Score = 250 bits (126), Expect = 1e-064
Identities = 186/206 (90%)
Strand = Plus / Plus
Query: 208 acgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtcgtcgtcgctcagg 267
|||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |||
Sbjct: 124 acgaaggaccagttgacgaacatgaaggcgaggcagtgcggcgcgtcgtcgtcgcccagc 183
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 184 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacgcacacg 243
Query: 328 ccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcc 387
|| || |||||||||||||| ||||| ||||| ||||| ||| |||||| ||| ||||||
Sbjct: 244 ccgcccgggaggtacgcgaaaccctgctgcatgatcttggggaactcggagcacagcgcc 303
Query: 388 ttcctgccatcgtcgtcaaggatctt 413
|| | ||| |||||||| ||||||||
Sbjct: 304 ttgcggccgtcgtcgtcgaggatctt 329
>gb|BM135820.1|BM135820 WHE2624_F04_L08ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2624_F04_L08,
mRNA sequence
Length = 577
Score = 186 bits (94), Expect = 2e-045
Identities = 154/174 (88%)
Strand = Plus / Minus
Query: 669 catttcaagctgtccaccaatgcgcgaaggagctattgccatggctaccctctgcaccga 728
||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 577 catttcaagctgtccaccaggacgggaaggggcaattgccatggccaccctctgcaccga 518
Query: 729 tgccaccacggtcctgacgtattgcctggccatggctgcgacgctctctcgtaggtgatt 788
||||||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| ||
Sbjct: 517 tgccaccacggtcctcacatactgcctcgccattgctgcaacactctctcgaaggtggtt 458
Query: 789 ttcatatgagaactggaaagcaatggtcagcactgatcttgtgttgcaggtgct 842
||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 457 ctcatacgagaactggaaagcaatggtaagcactgatcttgtgttgctggtgct 404
>gb|BJ322436.1|BJ322436 BJ322436 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf25e04 3', mRNA sequence
Length = 647
Score = 157 bits (79), Expect = 2e-036
Identities = 258/318 (81%), Gaps = 6/318 (1%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtc------gtc 257
||||| ||||| |||||| |||||||||||||| ||||||||||||| | | |||
Sbjct: 200 tcacaggaaggtccagttgacgaacatgaaggcgaggcagtgcggggcgcccgccacgtc 259
Query: 258 gtcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcga 317
||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 260 gtcgcccaccaccttccacgccaccgcctgctcgtacgacgcctgccgccccatgctcga 319
Query: 318 cacacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggt 377
| ||||| ||||| |||||||||||||| ||||| ||||| | ||| | | ||||||
Sbjct: 320 cttgcacaccccaccagggaggtacgcgaaaccctgctgcatgaccttggagaactcggc 379
Query: 378 gcagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagc 437
|| || ||||| | || |||||||| |||||| ||| || ||||||||||| ||
Sbjct: 380 acacagggccttgcgcccctcgtcgtccaggatcacctccagcgagatgtcctgcaggtt 439
Query: 438 aatcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagc 497
| ||| ||||||||||||||||||||| | || | |||| | |||||||||| |||||
Sbjct: 440 caccagagtcgtctccagcatgtccagggccgcgttgttgccgaaggtgaacataggagc 499
Query: 498 agccttcagggaacagca 515
|| |||||| || |||||
Sbjct: 500 aggcttcagagagcagca 517
>gb|BJ308775.1|BJ308775 BJ308775 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd17f20 3', mRNA sequence
Length = 645
Score = 149 bits (75), Expect = 4e-034
Identities = 257/318 (80%), Gaps = 6/318 (1%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtc------gtc 257
||||| ||||| |||||| |||||||||||||| |||||||| |||| | | |||
Sbjct: 229 tcacaggaaggtccagttgacgaacatgaaggcgaggcagtgtggggcgcccgccacgtc 288
Query: 258 gtcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcga 317
||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 gtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgctcga 348
Query: 318 cacacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggt 377
|||||||| || |||||||||||||| ||||| ||||| | ||| | | ||||||
Sbjct: 349 tttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaactcggc 408
Query: 378 gcagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagc 437
||| |||||||| | || || ||||| |||||| ||| || ||||||||||| ||
Sbjct: 409 gcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgcaggtt 468
Query: 438 aatcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagc 497
| |||||||||||||||||| |||||| | || | ||| |||| ||||||| |||||
Sbjct: 469 caccagcgtcgtctccagcatatccagggccgcgttgttaccaaacgtgaacatcggagc 528
Query: 498 agccttcagggaacagca 515
|| |||||| || |||||
Sbjct: 529 aggcttcagagagcagca 546
>gb|BJ308919.1|BJ308919 BJ308919 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd18a04 3', mRNA sequence
Length = 650
Score = 149 bits (75), Expect = 4e-034
Identities = 257/318 (80%), Gaps = 6/318 (1%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtc------gtc 257
||||| ||||| |||||| |||||||||||||| |||||||| |||| | | |||
Sbjct: 230 tcacaggaaggtccagttgacgaacatgaaggcgaggcagtgtggggcgcccgccacgtc 289
Query: 258 gtcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcga 317
||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 290 gtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgctcga 349
Query: 318 cacacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggt 377
|||||||| || |||||||||||||| ||||| ||||| | ||| | | ||||||
Sbjct: 350 tttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaactcggc 409
Query: 378 gcagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagc 437
||| |||||||| | || || ||||| |||||| ||| || ||||||||||| ||
Sbjct: 410 gcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgcaggtt 469
Query: 438 aatcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagc 497
| |||||||||||||||||| |||||| | || | ||| |||| ||||||| |||||
Sbjct: 470 caccagcgtcgtctccagcatatccagggccgcgttgttaccaaacgtgaacatcggagc 529
Query: 498 agccttcagggaacagca 515
|| |||||| || |||||
Sbjct: 530 aggcttcagagagcagca 547
>gb|BE492089.1|BE492089 WHE0551_D10_D10ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0551_D10_D10, mRNA
sequence
Length = 506
Score = 141 bits (71), Expect = 9e-032
Identities = 193/234 (82%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcggggtgtc------gtc 257
||||| ||||| |||||| |||||||||||||| ||||||||||||| | | |||
Sbjct: 259 tcacaggaaggtccagttgacgaacatgaaggcgaggcagtgcggggcgcccgccacgtc 200
Query: 258 gtcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgctcga 317
||||| || |||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 199 gtcgcccaccaccttccacgccaccgcctgctcgtatgatgcctgccgccccatgctcga 140
Query: 318 cacacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtactcggt 377
| |||||||| ||||||||||||||||| ||||| ||||| | ||| | | ||||||
Sbjct: 139 cttgcacacgcccccggggaggtacgcgaaaccctgctgcatgaccttggagaactcggc 80
Query: 378 gcagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctg 431
||| |||||||| | || |||||||| |||||| ||| || |||||||||||
Sbjct: 79 gcacagcgccttgcgcccctcgtcgtccaggatcgcctccagcgagatgtcctg 26
>gb|BJ303072.1|BJ303072 BJ303072 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd18a04 5', mRNA sequence
Length = 623
Score = 141 bits (71), Expect = 9e-032
Identities = 247/306 (80%), Gaps = 6/306 (1%)
Strand = Plus / Minus
Query: 216 ccagttcacgaacatgaaggcaaggcagtgcggggtgtc------gtcgtcgctcaggac 269
|||||| |||||||||||||| |||||||| |||| | | |||||||| || ||
Sbjct: 622 ccagttgacgaacatgaaggcgaggcagtgtggggcgcccgccacgtcgtcgcccaccac 563
Query: 270 cttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacacacacgcc 329
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 562 cttccacgccaccgcctgctcgtacgacacctgccgccccatgctcgatttgcacacgcc 503
Query: 330 accggggaggtacgcgaagccctgttgcataatcttagggtactcggtgcagagcgcctt 389
|| |||||||||||||| ||||| ||||| | ||| | | |||||| ||| ||||||||
Sbjct: 502 gccagggaggtacgcgaaaccctgctgcatgaccttggagaactcggcgcacagcgcctt 443
Query: 390 cctgccatcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgt 449
| || || ||||| |||||| ||| || ||||||||||| || | |||||||||
Sbjct: 442 gcgcccctcatcgtccaggatcgcctccagcgagatgtcctgcaggttcaccagcgtcgt 383
Query: 450 ctccagcatgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcaggga 509
||||||||| |||||| | || | ||| |||| ||||||| ||||||| |||||| ||
Sbjct: 382 ctccagcatatccagggccgcgttgttaccaaacgtgaacatcggagcaggcttcagaga 323
Query: 510 acagca 515
|||||
Sbjct: 322 gcagca 317
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgcca 733
||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 135 gaaggagctatcgccatggccaccctctgaaccgatgcca 96
>gb|BJ302920.1|BJ302920 BJ302920 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd17f20 5', mRNA sequence
Length = 568
Score = 139 bits (70), Expect = 4e-031
Identities = 214/262 (81%)
Strand = Plus / Minus
Query: 254 cgtcgtcgctcaggaccttccacgccaccgcctgctcgtacgacaccggccgccccatgc 313
||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 cgtcgtcgcccaccaccttccacgccaccgcctgctcgtacgacacctgccgccccatgc 502
Query: 314 tcgacacacacacgccaccggggaggtacgcgaagccctgttgcataatcttagggtact 373
|||| |||||||| || |||||||||||||| ||||| ||||| | ||| | | |||
Sbjct: 501 tcgatttgcacacgccgccagggaggtacgcgaaaccctgctgcatgaccttggagaact 442
Query: 374 cggtgcagagcgccttcctgccatcgtcgtcaaggatcttctcaagggagatgtcctgga 433
||| ||| |||||||| | || || ||||| |||||| ||| || ||||||||||| |
Sbjct: 441 cggcgcacagcgccttgcgcccctcatcgtccaggatcgcctccagcgagatgtcctgca 382
Query: 434 gagcaatcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaacacgg 493
| | |||||||||||||||||| |||||| | || | ||| |||| ||||||| |
Sbjct: 381 ggttcaccagcgtcgtctccagcatatccagggccgcgttgttaccaaacgtgaacatcg 322
Query: 494 gagcagccttcagggaacagca 515
|||||| |||||| || |||||
Sbjct: 321 gagcaggcttcagagagcagca 300
Score = 67.9 bits (34), Expect = 1e-009
Identities = 97/118 (82%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
||||||||||| |||||||| |||||||| |||||||||| || | ||| || || |||
Sbjct: 118 gaaggagctatcgccatggccaccctctgaaccgatgccattacagccctcacatactgc 59
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaa 811
|| ||||| ||||| ||||| || || ||||| || || ||||||||||||| ||||
Sbjct: 58 cttgccattgctgccacgctttcgcggaggtggttctcgaatgagaactggaaggcaa 1
>gb|CK200074.1|CK200074 FGAS008581 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 811
Score = 103 bits (52), Expect = 2e-020
Identities = 109/128 (85%)
Strand = Plus / Minus
Query: 694 gaaggagctattgccatggctaccctctgcaccgatgccaccacggtcctgacgtattgc 753
|||||||||||||||||||| ||||||||||| ||||||| ||| | ||| ||||| |||
Sbjct: 423 gaaggagctattgccatggccaccctctgcacggatgccatcacagccctcacgtactgc 364
Query: 754 ctggccatggctgcgacgctctctcgtaggtgattttcatatgagaactggaaagcaatg 813
|| ||||| ||||| ||||| || || ||||| || || ||||||||||||| || |||
Sbjct: 363 cttgccattgctgccacgctttcacggaggtggttctcgaatgagaactggaaggcgatg 304
Query: 814 gtcagcac 821
||||||||
Sbjct: 303 gtcagcac 296
Score = 54.0 bits (27), Expect = 2e-005
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 397 tcgtcgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagc 456
|||||||| |||||| ||| || ||||||||||| || | ||| ||||||||||||
Sbjct: 720 tcgtcgtccaggatcacctccagcgagatgtcctgcaggttcaccagagtcgtctccagc 661
Query: 457 atgtccaggccggcttggttggcaaaggtgaacacgggagcagccttcagggaacagca 515
||||||||| | || | |||| | |||||||||| ||||||| |||||| || |||||
Sbjct: 660 atgtccagggccgcgttgttgccgaaggtgaacataggagcaggcttcagagagcagca 602
>gb|BE488969.1|BE488969 WHE1077_B05_D09ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1077_B05_D09,
mRNA sequence
Length = 527
Score = 83.8 bits (42), Expect = 2e-014
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 428 cctggagagcaatcagcgtcgtctccagcatgtccaggccggcttggttggcaaaggtga 487
|||||||||||||||||| || ||||||||||| |||||||| || ||||||| | ||
Sbjct: 127 cctggagagcaatcagcggcgcctccagcatgtggaggccggcctgattggcaaggctgg 68
Query: 488 acacgggagcagccttcagggaacagcacatgat 521
|||| |||||||||||||||| || ||||||||
Sbjct: 67 acacaggagcagccttcagggggcaacacatgat 34
>gb|BE419036.1|BE419036 WWR018.C1R000101 ITEC WWR Wheat Root Library Triticum aestivum cDNA
clone WWR018.C1, mRNA sequence
Length = 570
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||| | |||||||| ||||||| ||||||||||||
Sbjct: 340 accttccacgccaccgccttcccgtacgacgccggccggcccatgctcgac 290
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 441 cagcgtcgtctccagcatgtccaggccgg 469
|||||||||||||||||||||||| ||||
Sbjct: 158 cagcgtcgtctccagcatgtccagcccgg 130
>gb|BE444321.1|BE444321 WHE1117_G08_M15ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_G08_M15,
mRNA sequence
Length = 425
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||| | |||||||| ||||||| ||||||||||||
Sbjct: 357 accttccacgccaccgccttcccgtacgacgccggccggcccatgctcgac 307
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 441 cagcgtcgtctccagcatgtccaggccgg 469
|||||||||||||||||||||||| ||||
Sbjct: 175 cagcgtcgtctccagcatgtccagcccgg 147
>gb|CD452662.1|CD452662 WHE1117_G08_M15ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1117_G08_M15,
mRNA sequence
Length = 677
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 268 accttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgac 318
||||||||||||||||||| | |||||||| ||||||| ||||||||||||
Sbjct: 301 accttccacgccaccgccttcccgtacgacgccggccggcccatgctcgac 351
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 441 cagcgtcgtctccagcatgtccaggccgg 469
|||||||||||||||||||||||| ||||
Sbjct: 483 cagcgtcgtctccagcatgtccagcccgg 511
>gb|CA639595.1|CA639595 wre1n.pk0024.h4 wre1n Triticum aestivum cDNA clone wre1n.pk0024.h4
5' end, mRNA sequence
Length = 357
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaacatgaaggcaaggcagtgcgggg 250
||||| ||||| |||||| |||||||||||||| |||||||| ||||
Sbjct: 68 tcacaggaaggtccagttgacgaacatgaaggcgaggcagtgtgggg 22
>gb|BE402487.1|BE402487 CSB008E01F990908 ITEC CSB Wheat Endosperm Library Triticum aestivum
cDNA clone CSB008E01, mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 806 aagcaatggtcagcactgat 825
||||||||||||||||||||
Sbjct: 304 aagcaatggtcagcactgat 323
>gb|BJ218161.1|BJ218161 BJ218161 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh36f11 3', mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 589 tcacacgaaggaccagttgacgaa 612
>gb|BJ244534.1|BJ244534 BJ244534 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf15e04 5', mRNA sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 477 ggcaaaggtgaacacgggagcagc 500
||||| ||||||||||||||||||
Sbjct: 192 ggcaacggtgaacacgggagcagc 215
>gb|BJ308742.1|BJ308742 BJ308742 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd17d11 3', mRNA sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 145 tcacacgaaggaccagttgacgaa 168
>gb|BQ607870.1|BQ607870 BRY_3769 wheat EST endosperm library Triticum aestivum cDNA 5',
mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 806 aagcaatggtcagcactgat 825
||||||||||||||||||||
Sbjct: 304 aagcaatggtcagcactgat 323
>gb|CA484792.1|CA484792 WHE4310_G06_M12ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4310_G06_M12, mRNA sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 335 tcacacgaaggaccagttgacgaa 312
>gb|CA645124.1|CA645124 wre1n.pk0087.c11 wre1n Triticum aestivum cDNA clone
wre1n.pk0087.c11 5' end, mRNA sequence
Length = 293
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 113 tcacacgaaggaccagttgacgaa 90
>gb|CA709633.1|CA709633 wdk2c.pk013.p4 wdk2c Triticum aestivum cDNA clone wdk2c.pk013.p4 5'
end, mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 806 aagcaatggtcagcactgat 825
||||||||||||||||||||
Sbjct: 211 aagcaatggtcagcactgat 230
>gb|CD867975.1|CD867975 AZO2.107L04F001113 AZO2 Triticum aestivum cDNA clone AZO2107L04,
mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 300 tcacacgaaggaccagttgacgaa 277
>gb|DR735836.1|DR735836 FGAS016879 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1018
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 204 tcacacgaaggaccagttcacgaa 227
|||||||||||||||||| |||||
Sbjct: 183 tcacacgaaggaccagttgacgaa 206
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 169,516
Number of Sequences: 636343
Number of extensions: 169516
Number of successful extensions: 45757
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45673
Number of HSP's gapped (non-prelim): 64
length of query: 887
length of database: 367,240,239
effective HSP length: 19
effective length of query: 868
effective length of database: 355,149,722
effective search space: 308269958696
effective search space used: 308269958696
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)