BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.2
(850 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF199736.1|BF199736 WHE0591-0594_J22_J22ZE Triticum mono... 141 9e-032
gb|BJ253605.1|BJ253605 BJ253605 Y. Ogihara unpublished cDNA... 133 2e-029
gb|BJ254052.1|BJ254052 BJ254052 Y. Ogihara unpublished cDNA... 133 2e-029
gb|CD901626.1|CD901626 G356.104F14R011023 G356 Triticum aes... 133 2e-029
gb|CD932708.1|CD932708 GR45.118M17R010830 GR45 Triticum aes... 133 2e-029
gb|AJ610938.1|AJ610938 AJ610938 Triticum turgidum subsp. du... 127 1e-027
gb|BJ278338.1|BJ278338 BJ278338 Y. Ogihara unpublished cDNA... 125 5e-027
gb|BJ283392.1|BJ283392 BJ283392 Y. Ogihara unpublished cDNA... 125 5e-027
gb|AJ612241.1|AJ612241 AJ612241 Triticum turgidum subsp. du... 107 1e-021
gb|CV769270.1|CV769270 FGAS063661 Triticum aestivum FGAS: L... 100 3e-019
gb|CD939045.1|CD939045 OV.112A11F010313 OV Triticum aestivu... 88 1e-015
gb|BQ904604.1|BQ904604 Ta04_04h07_R Ta04_AAFC_ECORC_Fusariu... 66 4e-009
gb|CK196770.1|CK196770 FGAS005232 Triticum aestivum FGAS: L... 66 4e-009
gb|BQ839402.1|BQ839402 WHE4165_G01_N01ZS Wheat CS whole pla... 64 2e-008
gb|BE425652.1|BE425652 WHE0322_G08_G08ZS Wheat unstressed s... 56 4e-006
gb|BJ247923.1|BJ247923 BJ247923 Y. Ogihara unpublished cDNA... 56 4e-006
gb|BQ904769.1|BQ904769 Ta04_11h05_R Ta04_AAFC_ECORC_Fusariu... 56 4e-006
gb|CD913318.1|CD913318 G550.117I05F010525 G550 Triticum aes... 56 4e-006
gb|CD870855.1|CD870855 AZO2.115M02F010117 AZO2 Triticum aes... 48 0.001
gb|CV777397.1|CV777397 FGAS071803 Triticum aestivum FGAS: L... 44 0.016
>gb|BF199736.1|BF199736 WHE0591-0594_J22_J22ZE Triticum monococcum vegetative apex cDNA
library Triticum monococcum cDNA clone
WHE0591-0594_J22_J22, mRNA sequence
Length = 569
Score = 141 bits (71), Expect = 9e-032
Identities = 234/289 (80%)
Strand = Plus / Minus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||| ||||||||||| |
Sbjct: 513 ctcagtccagcctccttagcaagtatgctacctggacgtccttggtcagcggcatgatcc 454
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| ||||||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 453 tgttgctgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 394
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 393 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 334
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 333 gttcgatcgcacgctcgaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 274
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || ||||||||| |||||||||||||||||||||||||
Sbjct: 273 gagcttttattgcaggcgtgtaatcttcaggggactcttgaaacttggc 225
Score = 52.0 bits (26), Expect = 6e-005
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatca 707
||||||||||||| || ||||||||||||||||||| ||| ||||||
Sbjct: 183 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatca 134
>gb|BJ253605.1|BJ253605 BJ253605 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2j16 3', mRNA sequence
Length = 598
Score = 133 bits (67), Expect = 2e-029
Identities = 233/289 (80%)
Strand = Plus / Plus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 128 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 187
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| || |||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 188 tgttgccgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 247
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 248 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 307
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 308 gttcgatggcacgctcaaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 367
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || || |||||| |||||||||||||||||||||||||
Sbjct: 368 gagcttttattgcaggagtgtaatcttcaggggactcttgaaacttggc 416
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 458 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 509
>gb|BJ254052.1|BJ254052 BJ254052 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf4d22 3', mRNA sequence
Length = 704
Score = 133 bits (67), Expect = 2e-029
Identities = 233/289 (80%)
Strand = Plus / Plus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 317 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 376
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| || |||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 377 tgttgccgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 436
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 437 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 496
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 497 gttcgatggcacgctcaaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 556
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || || |||||| |||||||||||||||||||||||||
Sbjct: 557 gagcttttattgcaggagtgtaatcttcaggggactcttgaaacttggc 605
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 678 caaagagcactggatccagcattaccatcact 709
||||||||||||||||||| ||| ||||||||
Sbjct: 668 caaagagcactggatccagaatttccatcact 699
>gb|CD901626.1|CD901626 G356.104F14R011023 G356 Triticum aestivum cDNA clone G356104F14,
mRNA sequence
Length = 697
Score = 133 bits (67), Expect = 2e-029
Identities = 233/289 (80%)
Strand = Plus / Plus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 324 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 383
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| || |||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 384 tgttgccgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 443
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 444 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 503
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 504 gttcgatggcacgctcaaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 563
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || || |||||| |||||||||||||||||||||||||
Sbjct: 564 gagcttttattgcaggagtgtaatcttcaggggactcttgaaacttggc 612
Score = 46.1 bits (23), Expect = 0.004
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccag 696
||||||||||||| || |||||||||||||||||||
Sbjct: 654 cctgcaagcaggtcgtgtcgcaaagagcactggatccag 692
>gb|CD932708.1|CD932708 GR45.118M17R010830 GR45 Triticum aestivum cDNA clone GR45118M17,
mRNA sequence
Length = 491
Score = 133 bits (67), Expect = 2e-029
Identities = 233/289 (80%)
Strand = Plus / Plus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 165 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 224
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| || |||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 225 tgttgccgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 284
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 285 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 344
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 345 gttcgatggcacgctcaaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 404
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || || |||||| |||||||||||||||||||||||||
Sbjct: 405 gagcttttattgcaggagtgtaatcttcaggggactcttgaaacttggc 453
>gb|AJ610938.1|AJ610938 AJ610938 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 04083R, mRNA
sequence
Length = 610
Score = 127 bits (64), Expect = 1e-027
Identities = 227/282 (80%)
Strand = Plus / Minus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 283 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 224
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| ||||||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 223 tgtcgctgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 164
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 163 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 104
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| | | ||| |||||| ||| ||| |
Sbjct: 103 gttcgatggcacgctcgaccgtctcgtacgtgaggatctgcattagttgagcaccgtcct 44
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaa 609
| ||| ||| || ||||||||| ||||||||||||||||||
Sbjct: 43 gagcttctattgcaggcgtgtaatcttcaggggactcttgaa 2
>gb|BJ278338.1|BJ278338 BJ278338 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr15m06 5', mRNA sequence
Length = 610
Score = 125 bits (63), Expect = 5e-027
Identities = 232/289 (80%)
Strand = Plus / Minus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || | || || |||||||| ||||||||||| |
Sbjct: 434 ctcagtccagcctccttagcaagtatgctatctggacgtccttggtcagcggcatgatcc 375
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| ||||||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 374 tgttgctgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 315
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 314 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 255
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 254 gttcgatcgcacgctcgaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 195
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || || |||||| |||||||||||||||||||||||||
Sbjct: 194 gagcttttattgcaggagtgtaatcttcaggggactcttgaaacttggc 146
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 104 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 53
>gb|BJ283392.1|BJ283392 BJ283392 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr15m06 3', mRNA sequence
Length = 703
Score = 125 bits (63), Expect = 5e-027
Identities = 232/289 (80%)
Strand = Plus / Plus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || | || || |||||||| ||||||||||| |
Sbjct: 318 ctcagtccagcctccttagcaagtatgctatctggacgtccttggtcagcggcatgatcc 377
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| ||||||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 378 tgttgctgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 437
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 438 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 497
Query: 508 gttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtctt 567
|||||| |||||||| ||||| | || ||||| || | ||| |||||| | | ||| |
Sbjct: 498 gttcgatcgcacgctcgaccgtctcgtaggtgaggagctgcattagttgagcgccgtcct 557
Query: 568 gggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
| ||| |||| || || |||||| |||||||||||||||||||||||||
Sbjct: 558 gagcttttattgcaggagtgtaatcttcaggggactcttgaaacttggc 606
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 648 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 699
>gb|AJ612241.1|AJ612241 AJ612241 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 06436R, mRNA
sequence
Length = 680
Score = 107 bits (54), Expect = 1e-021
Identities = 201/251 (80%)
Strand = Plus / Minus
Query: 366 tccttggttagcggcatgattctgtagctgtacagctcggcgaccaagctcggcctgatc 425
|||||||| ||||||||||| |||| ||||||||| | ||||||| ||| |||||||||
Sbjct: 656 tccttggtcagcggcatgatcctgttgctgtacagtccagcgaccaggctgggcctgatc 597
Query: 426 ttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctcttgcccgaagatc 485
||||| || || | |||||||| | | ||| || ||||||||||| || || || |||
Sbjct: 596 ttgtacacaggcgccatgcccttggcttcagctcctatgttcacctcctgtccaaatatc 537
Query: 486 ttggctttggcctccaccctgtgttcgacagcacgctccaccgtttnntatgtgagaagg 545
||||| |||| ||||||| ||||||| |||||||| ||||| | || ||||| ||
Sbjct: 536 ttggccttggtttccacccgatgttcgatcgcacgctcgaccgtctcgtaggtgaggagc 477
Query: 546 ttcatgagttgatcacggtcttgggctattatggctggcgtgtaagcttcaggggactct 605
| ||| |||||| | | ||| || ||| |||| || | |||||| ||||||||||||||
Sbjct: 476 tgcattagttgagcgccgtcctgagcttttattgcangagtgtaatcttcaggggactct 417
Query: 606 tgaaacttggc 616
|||||||||||
Sbjct: 416 tgaaacttggc 406
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 364 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 313
>gb|CV769270.1|CV769270 FGAS063661 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 930
Score = 99.6 bits (50), Expect = 3e-019
Identities = 164/202 (81%)
Strand = Plus / Minus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 371 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 312
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| || |||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 311 tgttgccgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 252
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgt 507
|| | | ||| || ||||||||||| || || || |||||||| |||| ||||||| |
Sbjct: 251 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttggtttccacccgat 192
Query: 508 gttcgacagcacgctccaccgt 529
|||||| |||||||| |||||
Sbjct: 191 gttcgatggcacgctcaaccgt 170
>gb|CD939045.1|CD939045 OV.112A11F010313 OV Triticum aestivum cDNA clone OV112A11, mRNA
sequence
Length = 507
Score = 87.7 bits (44), Expect = 1e-015
Identities = 137/168 (81%)
Strand = Plus / Minus
Query: 328 ctcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattc 387
|||| ||||||||||| |||||||| || |||| || |||||||||||||||||||| |
Sbjct: 170 ctcagtccagcctccttagcaagtatgctacctggacgtccttggttagcggcatgatcc 111
Query: 388 tgtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccct 447
||| || |||||| | ||||||| ||| |||||||||||||| || || | ||||||
Sbjct: 110 tgttgccgtacagtccagcgaccaggctgggcctgatcttgtacacaggcgccatgccct 51
Query: 448 tgtccttagcaccaatgttcacctcttgcccgaagatcttggctttgg 495
|| | | ||| || ||||||||||| || || || |||||||| ||||
Sbjct: 50 tggcttcagctcctatgttcacctcctgtccaaatatcttggccttgg 3
>gb|BQ904604.1|BQ904604 Ta04_04h07_R
Ta04_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta04_04h07, mRNA
sequence
Length = 317
Score = 65.9 bits (33), Expect = 4e-009
Identities = 124/155 (80%)
Strand = Plus / Plus
Query: 462 atgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgc 521
||||||||||| || || || |||||||| |||| ||||||| ||||||| ||||||
Sbjct: 33 atgttcacctcctgtccaaatatcttggccttggtttccacccgatgttcgatcgcacgc 92
Query: 522 tccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatggct 581
|| ||||| | || ||||| || | ||| || ||| | | ||| || ||| |||| ||
Sbjct: 93 tcgaccgtctcgtaggtgaggagctgcattagctgagcgccgtcctgagcttttattgca 152
Query: 582 ggcgtgtaagcttcaggggactcttgaaacttggc 616
|| |||||| |||||||||||||||||||||||||
Sbjct: 153 ggagtgtaatcttcaggggactcttgaaacttggc 187
Score = 48.1 bits (24), Expect = 0.001
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||||| |||||||||||| ||| ||||||||
Sbjct: 229 cctgcaagcaggtcgtgtcgcaaagaacactggatccagaatttccatcact 280
>gb|CK196770.1|CK196770 FGAS005232 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 821
Score = 65.9 bits (33), Expect = 4e-009
Identities = 124/155 (80%)
Strand = Plus / Minus
Query: 462 atgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgc 521
||||||||||| || || || |||||||| | || ||||||| ||||||| ||||||
Sbjct: 713 atgttcacctcctgtccaaatatcttggcctgggtttccacccgatgttcgatggcacgc 654
Query: 522 tccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatggct 581
|| ||||| | || ||||| || | ||| |||||| | | ||| || ||| |||| ||
Sbjct: 653 tcaaccgtctcgtaggtgaggagctgcattagttgagcgccgtcctgagcttttattgca 594
Query: 582 ggcgtgtaagcttcaggggactcttgaaacttggc 616
|| |||||| |||||||||||||||||||||||||
Sbjct: 593 ggagtgtaatcttcaggggactcttgaaacttggc 559
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 517 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 466
>gb|BQ839402.1|BQ839402 WHE4165_G01_N01ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4165_G01_N01, mRNA sequence
Length = 708
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
|||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 700 cctgcaagcaggttgtgtcgcaaagagcactggatccagaatttccatcact 649
>gb|BE425652.1|BE425652 WHE0322_G08_G08ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0322_G08_G08, mRNA
sequence
Length = 433
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 585 gtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||||||||||||||||||||||
Sbjct: 417 gtgtaatcttcaggggactcttgaaacttggc 386
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 344 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 293
>gb|BJ247923.1|BJ247923 BJ247923 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf4d22 5', mRNA sequence
Length = 630
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 621 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 570
>gb|BQ904769.1|BQ904769 Ta04_11h05_R
Ta04_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta04_11h05, mRNA
sequence
Length = 319
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 585 gtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||||||||||||||||||||||
Sbjct: 157 gtgtaatcttcaggggactcttgaaacttggc 188
Score = 48.1 bits (24), Expect = 0.001
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||||| |||||||||||| ||| ||||||||
Sbjct: 230 cctgcaagcaggtcgtgtcgcaaagaacactggatccagaatttccatcact 281
>gb|CD913318.1|CD913318 G550.117I05F010525 G550 Triticum aestivum cDNA clone G550117I05,
mRNA sequence
Length = 538
Score = 56.0 bits (28), Expect = 4e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 585 gtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||||||||||||||||||||||
Sbjct: 426 gtgtaatcttcaggggactcttgaaacttggc 395
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || ||||||||||||||||||| ||| ||||||||
Sbjct: 353 cctgcaagcaggtcgtgtcgcaaagagcactggatccagaatttccatcact 302
>gb|CD870855.1|CD870855 AZO2.115M02F010117 AZO2 Triticum aestivum cDNA clone AZO2115M02,
mRNA sequence
Length = 690
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 678 caaagagcactggatccagcattaccatcact 709
||||||||||||||||||| ||| ||||||||
Sbjct: 686 caaagagcactggatccagaatttccatcact 655
>gb|CV777397.1|CV777397 FGAS071803 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 835
Score = 44.1 bits (22), Expect = 0.016
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 660 tgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| || |||||||||| |||||||| ||| ||||||||
Sbjct: 768 tgcaagcaggtcggttcgcaaagagcaccggatccagaatttccatcact 719
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,264
Number of Sequences: 636343
Number of extensions: 101264
Number of successful extensions: 31540
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31481
Number of HSP's gapped (non-prelim): 45
length of query: 850
length of database: 367,240,239
effective HSP length: 19
effective length of query: 831
effective length of database: 355,149,722
effective search space: 295129418982
effective search space used: 295129418982
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)