BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493751.2.1
(577 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK216290.1|CK216290 FGAS028277 Triticum aestivum FGAS: L... 143 2e-032
gb|BG263366.1|BG263366 WHE2341_B07_C13ZS Wheat pre-anthesis... 139 2e-031
gb|DR737566.1|DR737566 FGAS082796 Triticum aestivum FGAS: L... 139 2e-031
gb|CK208193.1|CK208193 FGAS019876 Triticum aestivum FGAS: L... 115 3e-024
gb|DR736799.1|DR736799 FGAS082169 Triticum aestivum FGAS: L... 84 1e-014
gb|BE426465.1|BE426465 WHE0335_D05_H09ZS Wheat unstressed s... 54 1e-005
gb|BE445726.1|BE445726 WHE1453_B02_D03ZS Wheat etiolated se... 54 1e-005
gb|BJ254343.1|BJ254343 BJ254343 Y. Ogihara unpublished cDNA... 54 1e-005
gb|BU099253.1|BU099253 WHE3305_D01_G01ZS Chinese Spring whe... 54 1e-005
gb|CD861635.1|CD861635 AZO1.003B04F010109 AZO1 Triticum aes... 54 1e-005
gb|DR739798.1|DR739798 FGAS000065 Triticum aestivum FGAS: L... 54 1e-005
gb|DR739897.1|DR739897 FGAS000164 Triticum aestivum FGAS: L... 54 1e-005
emb|AJ890250.1| Triticum aestivum partial mRNA for putative... 54 1e-005
gb|BQ789312.1|BQ789312 WHE4160_B02_C04ZS Wheat CS whole pla... 52 4e-005
gb|CD491586.1|CD491586 WHE3091_H06_O11ZT CS wheat cold-stre... 50 2e-004
gb|CK162011.1|CK162011 FGAS014595 Triticum aestivum FGAS: L... 48 7e-004
gb|CK217863.1|CK217863 FGAS029865 Triticum aestivum FGAS: L... 48 7e-004
gb|AJ609911.1|AJ609911 AJ609911 Triticum turgidum subsp. du... 48 7e-004
gb|AJ609912.1|AJ609912 AJ609912 Triticum turgidum subsp. du... 48 7e-004
gb|AJ612736.1|AJ612736 AJ612736 Triticum turgidum subsp. du... 48 7e-004
gb|DR739630.1|DR739630 FGAS084847 Triticum aestivum FGAS: L... 48 7e-004
gb|DR741019.1|DR741019 FGAS000951 Triticum aestivum FGAS: L... 48 7e-004
gb|BQ483660.1|BQ483660 WHE3511_B06_D11ZS Wheat unstressed r... 46 0.003
gb|BJ227672.1|BJ227672 BJ227672 Y. Ogihara unpublished cDNA... 46 0.003
gb|DR738067.1|DR738067 FGAS083284 Triticum aestivum FGAS: L... 46 0.003
gb|DR741132.1|DR741132 FGAS001064 Triticum aestivum FGAS: L... 46 0.003
gb|BQ902358.1|BQ902358 Ta02_04b02_R Ta02_AAFC_ECORC_Fusariu... 44 0.010
gb|BJ251676.1|BJ251676 BJ251676 Y. Ogihara unpublished cDNA... 42 0.041
gb|BQ902422.1|BQ902422 Ta02_02a02_R Ta02_AAFC_ECORC_Fusariu... 42 0.041
gb|BQ903454.1|BQ903454 Ta03_10d12_R Ta03_AAFC_ECORC_Fusariu... 42 0.041
gb|CA484603.1|CA484603 WHE4308_E01_J02ZS Wheat meiotic anth... 42 0.041
gb|CA485140.1|CA485140 WHE4315_A03_B05ZS Wheat meiotic anth... 42 0.041
gb|CA741215.1|CA741215 wia1c.pk001.g14 wia1c Triticum aesti... 42 0.041
gb|CN008549.1|CN008549 WHE2642_E02_I04ZE Wheat Fusarium gra... 42 0.041
gb|CK161858.1|CK161858 FGAS014434 Triticum aestivum FGAS: L... 40 0.16
gb|CK204447.1|CK204447 FGAS012983 Triticum aestivum FGAS: L... 40 0.16
gb|CK215636.1|CK215636 FGAS027604 Triticum aestivum FGAS: L... 40 0.16
>gb|CK216290.1|CK216290 FGAS028277 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1089
Score = 143 bits (72), Expect = 2e-032
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 315 ccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggccccgagttcg 374
||||||||||||||||||||||| | |||||||||||||||||| ||||| |||||||||
Sbjct: 267 ccgtggaggtgttcctgttcgacctctacgacgaggacggcaagaccggcgccgagttcg 208
Query: 375 agcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatcaactttgcct 434
|||||||||| |||||||||||||| |||||| ||||| || |||||||||||||||
Sbjct: 207 agcgccacttcggcatcttcagggcagacggcgtcaaggcctacaacatcaactttgcct 148
Score = 141 bits (71), Expect = 6e-032
Identities = 170/203 (83%)
Strand = Plus / Minus
Query: 92 gacggcgcgctggtgtacacgaacctgttcgacgccacggtagacgcgctggtggccgcg 151
||||||||||||| |||| || |||||||||||| ||||| |||||| ||||||| |||
Sbjct: 490 gacggcgcgctggcgtacgcgggcctgttcgacgcgacggtggacgcggtggtggcggcg 431
Query: 152 ctggagaaggaggggttcggcggcgtgttgttcgcggtgaccgagaccgggtggccaacc 211
|| ||| |||||| |||||||| ||| | ||||||||||||||||||||||| |||
Sbjct: 430 ctcgagcgggagggcttcggcggggtgcccgtggcggtgaccgagaccgggtggcccacc 371
Query: 212 gcggggcacccggccgccaccccgcagaacgccacagcgtacaacgccaagattgtggag 271
||||||||||||||||| || ||| |||||||| | |||||||||| | ||| | |||
Sbjct: 370 gcggggcacccggccgcgacgccggagaacgccgcggcgtacaacgggaggatggctgag 311
Query: 272 aggccggcgcgcggcgtcggcac 294
||| ||||||| |||| ||||||
Sbjct: 310 agggcggcgcggggcgccggcac 288
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 5 gcctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctc 64
|||||||| |||||||||||||| ||||||||| ||||||| |||||| |||||||||
Sbjct: 577 gcctacccgttcatcagccacgtcggcgacccggccaacgtgccgctcgcctacgcgctc 518
>gb|BG263366.1|BG263366 WHE2341_B07_C13ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2341_B07_C13, mRNA sequence
Length = 283
Score = 139 bits (70), Expect = 2e-031
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 92 gacggcgcgctggtgtacacgaacctgttcgacgccacggtagacgcgctggtggccgcg 151
||||||||||||| |||| || |||||||||||| ||||| |||||| ||||||| |||
Sbjct: 108 gacggcgcgctggcgtactcgggcctgttcgacgcgacggtggacgcggtggtggcggcg 167
Query: 152 ctggagaaggaggggttcggcggcgtgttgttcgcggtgaccgagaccgggtggccaacc 211
|| ||| |||||| |||| ||||||| | | ||||||||||||||||||||||| |||
Sbjct: 168 ctcgagcgggagggcttcgccggcgtgccggtggcggtgaccgagaccgggtggcccacc 227
Query: 212 gcggggcacccggccgccaccccgcagaacgccacagcgtacaacg 257
||||||||||||||||| || ||| ||||||| | ||||||||||
Sbjct: 228 gcggggcacccggccgcgacgccggagaacgcggcggcgtacaacg 273
Score = 56.0 bits (28), Expect = 3e-006
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 5 gcctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctc 64
|||||||| ||| ||||||||||| ||||||||| ||||||| |||||| |||||||||
Sbjct: 22 gcctacccgttc-tcagccacgtgggcgacccggccaacgtgccgctcgcctacgcgctc 80
>gb|DR737566.1|DR737566 FGAS082796 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1210
Score = 139 bits (70), Expect = 2e-031
Identities = 106/118 (89%)
Strand = Plus / Minus
Query: 317 gtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggccccgagttcgag 376
||||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||||
Sbjct: 272 gtggaggtgttcctgttcgacctctacgacgagggcggcaagaccggccccgagttcgag 213
Query: 377 cgccactttggcatcttcagggcggacggcagtaaggcgtatgacatcaactttgcct 434
|||||||||||||| |||||||| |||||| ||||| || |||||||||||||||
Sbjct: 212 cgccactttggcatgttcagggcagacggcgtcaaggcctacaacatcaactttgcct 155
>gb|CK208193.1|CK208193 FGAS019876 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1161
Score = 115 bits (58), Expect = 3e-024
Identities = 103/118 (87%)
Strand = Plus / Minus
Query: 315 ccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggccccgagttcg 374
|||||||| | |||||||||||| | |||||||||||||||||| ||||| |||||||||
Sbjct: 310 ccgtggagtttttcctgttcgacctctacgacgaggacggcaagaccggcgccgagttcg 251
Query: 375 agcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatcaactttgc 432
|||| ||||| |||||||||||||| |||||| ||||| || |||||||||||||
Sbjct: 250 agcgtcacttcggcatcttcagggccgacggcgtcaaggcctacaacatcaactttgc 193
>gb|DR736799.1|DR736799 FGAS082169 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1074
Score = 83.8 bits (42), Expect = 1e-014
Identities = 109/130 (83%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 92 gacggcgcgctggtgtacacgaacctgttcgacgccacggtagacgcgctggtggccgcg 151
||||||||||||| |||| || |||||||||||| ||||| |||||| ||||||| |||
Sbjct: 753 gacggcgcgctggcgtacgcgggcctgttcgacgcgacggtggacgcggtggtggcggcg 812
Query: 152 ctggagaaggaggggttcggcggcgtgttgttcgcggtgaccgagaccgggtggccaacc 211
|| || ||| ||||||||||||||| | ||||||| ||||||||||||||| |||
Sbjct: 813 ctcgaccggga-gggttcggcggcgtgcccgtggcggtgaacgagaccgggtggcccacc 871
Query: 212 gcggggcacc 221
| ||||||||
Sbjct: 872 ggggggcacc 881
Score = 71.9 bits (36), Expect = 5e-011
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 5 gcctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctc 64
|||||||| ||||||||||||||| ||||||||| ||||||| |||||| |||||||||
Sbjct: 666 gcctacccgttcatcagccacgtgggcgacccggccaacgtgccgctcgcctacgcgctc 725
>gb|BE426465.1|BE426465 WHE0335_D05_H09ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0335_D05_H09, mRNA
sequence
Length = 332
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 263 cctgttcgacgccatggtggacgccctggtggcagcgctggag 305
>gb|BE445726.1|BE445726 WHE1453_B02_D03ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1453_B02_D03,
mRNA sequence
Length = 461
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 386 cctgttcgacgccatggtggacgccctggtggcagcgctggag 428
>gb|BJ254343.1|BJ254343 BJ254343 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5f02 3', mRNA sequence
Length = 638
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 440 cctgttcgacgccatggtggacgccctggtggcagcgctggag 398
>gb|BU099253.1|BU099253 WHE3305_D01_G01ZS Chinese Spring wheat drought stressed root cDNA
library Triticum aestivum cDNA clone WHE3305_D01_G01,
mRNA sequence
Length = 465
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 291 cctgttcgacgccatggtggacgccctggtggcagcgctggag 333
>gb|CD861635.1|CD861635 AZO1.003B04F010109 AZO1 Triticum aestivum cDNA clone AZO1003B04,
mRNA sequence
Length = 695
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 641 cctgttcgacgccatggtggacgccctggtggcagcgctggag 683
>gb|DR739798.1|DR739798 FGAS000065 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1143
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 695 cctgttcgacgccatggtggacgccctggtggcagcgctggag 737
>gb|DR739897.1|DR739897 FGAS000164 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1096
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 693 cctgttcgacgccatggtggacgccctggtggcagcgctggag 735
>emb|AJ890250.1| Triticum aestivum partial mRNA for putative glucan
endo-1,3-beta-D-glucosidase (wgluc5 gene)
Length = 1242
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 657 cctgttcgacgccatggtggacgccctggtggcagcgctggag 699
>gb|BQ789312.1|BQ789312 WHE4160_B02_C04ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4160_B02_C04, mRNA sequence
Length = 503
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctgga 156
|||||||||||||| ||| ||||| |||||||| ||||||||
Sbjct: 459 cctgttcgacgccatggtggacgccctggtggcggcgctgga 500
>gb|CD491586.1|CD491586 WHE3091_H06_O11ZT CS wheat cold-stressed seedling subtracted cDNA
library Triticum aestivum cDNA clone WHE3091_H06_O11,
mRNA sequence
Length = 497
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 451 gctggtgtacacgaacctcttcgacgcca 423
>gb|CK162011.1|CK162011 FGAS014595 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1178
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggaga 158
|||||||||||||| ||| ||||| ||||| || ||||||||||
Sbjct: 242 cctgttcgacgccatggtggacgccctggtcgcggcgctggaga 285
>gb|CK217863.1|CK217863 FGAS029865 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1137
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggaga 158
|||||||||||||| ||| ||||| ||||| || ||||||||||
Sbjct: 779 cctgttcgacgccatggtggacgccctggtcgcggcgctggaga 822
>gb|AJ609911.1|AJ609911 AJ609911 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 00477R, mRNA
sequence
Length = 403
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 ggacggcgcgctggtgtacacgaacctgttcgacgc 126
|||||||| |||||||||||| ||| ||||||||||
Sbjct: 120 ggacggcgggctggtgtacaccaacatgttcgacgc 155
>gb|AJ609912.1|AJ609912 AJ609912 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 00478R, mRNA
sequence
Length = 502
Score = 48.1 bits (24), Expect = 7e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 ggacggcgcgctggtgtacacgaacctgttcgacgc 126
|||||||| |||||||||||| ||| ||||||||||
Sbjct: 120 ggacggcgggctggtgtacaccaacatgttcgacgc 155
>gb|AJ612736.1|AJ612736 AJ612736 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 07505R, mRNA
sequence
Length = 654
Score = 48.1 bits (24), Expect = 7e-004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||| |||| |||||||||
Sbjct: 583 cctgttcgacgccatggtggacgccctgntggcggcgctggag 625
>gb|DR739630.1|DR739630 FGAS084847 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1063
Score = 48.1 bits (24), Expect = 7e-004
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| ||| |||| |||||||||
Sbjct: 703 cctgttcgacgccatggtggacgccctgntggcggcgctggag 745
>gb|DR741019.1|DR741019 FGAS000951 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1063
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggaga 158
|||||||||||||| ||| ||||| ||||| || ||||||||||
Sbjct: 716 cctgttcgacgccatggtggacgccctggtcgcggcgctggaga 759
>gb|BQ483660.1|BQ483660 WHE3511_B06_D11ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3511_B06_D11, mRNA sequence
Length = 727
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgct 153
|||||||||||||| ||| ||||| |||||||| |||||
Sbjct: 689 cctgttcgacgccatggtggacgccctggtggcggcgct 727
>gb|BJ227672.1|BJ227672 BJ227672 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl15g12 3', mRNA sequence
Length = 685
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 gtacacgaacctgttcgacgcca 128
|||||||||||||||||||||||
Sbjct: 442 gtacacgaacctgttcgacgcca 420
>gb|DR738067.1|DR738067 FGAS083284 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1159
Score = 46.1 bits (23), Expect = 0.003
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 92 gacggcgcgctggtgtacacgaacctgttcgacgccacggtagacgcgctggtg 145
||||||||||||| |||| || |||||||||||| ||||| ||| || |||||
Sbjct: 855 gacggcgcgctggcgtacgcgggcctgttcgacgcgacggtggacccgntggtg 908
>gb|DR741132.1|DR741132 FGAS001064 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1110
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggccgcgctggag 157
|||||||||||||| ||| ||||| |||||||| || ||||||
Sbjct: 705 cctgttcgacgccatggtggacgccctggtggcggccctggag 747
>gb|BQ902358.1|BQ902358 Ta02_04b02_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_04b02, mRNA
sequence
Length = 310
Score = 44.1 bits (22), Expect = 0.010
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgcca 128
||||||||||||||||||||||
Sbjct: 100 tacacgaacctgttcgacgcca 121
>gb|BJ251676.1|BJ251676 BJ251676 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf20c12 3', mRNA sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 107 tacacgaacctgttcgacgccacggtagacgcg 139
||||||||||| |||||||||| ||| ||||||
Sbjct: 572 tacacgaacctcttcgacgccatggtcgacgcg 540
>gb|BQ902422.1|BQ902422 Ta02_02a02_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_02a02, mRNA
sequence
Length = 239
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 107 tacacgaacctgttcgacgccacggtagacgcg 139
||||||||||| |||||||||| ||| ||||||
Sbjct: 144 tacacgaacctcttcgacgccatggtcgacgcg 112
>gb|BQ903454.1|BQ903454 Ta03_10d12_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_10d12, mRNA
sequence
Length = 168
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 107 tacacgaacctgttcgacgccacggtagacgcg 139
||||||||||| |||||||||| ||| ||||||
Sbjct: 144 tacacgaacctcttcgacgccatggtcgacgcg 112
>gb|CA484603.1|CA484603 WHE4308_E01_J02ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4308_E01_J02, mRNA sequence
Length = 419
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 aggaggggttcggcggcgtgt 179
|||||||||||||||||||||
Sbjct: 183 aggaggggttcggcggcgtgt 203
>gb|CA485140.1|CA485140 WHE4315_A03_B05ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4315_A03_B05, mRNA sequence
Length = 490
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 159 aggaggggttcggcggcgtgt 179
|||||||||||||||||||||
Sbjct: 302 aggaggggttcggcggcgtgt 322
>gb|CA741215.1|CA741215 wia1c.pk001.g14 wia1c Triticum aestivum cDNA clone wia1c.pk001.g14
5' end, mRNA sequence
Length = 501
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcg 139
||||||||||| |||||||||| ||| ||||||
Sbjct: 460 tacacgaacctcttcgacgccatggtcgacgcg 492
>gb|CN008549.1|CN008549 WHE2642_E02_I04ZE Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE2642_E02_I04,
mRNA sequence
Length = 434
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtggc 147
|||||||||||||| ||| ||||| ||||||||
Sbjct: 400 cctgttcgacgccatggtggacgccctggtggc 432
>gb|CK161858.1|CK161858 FGAS014434 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1130
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 gacggcgcgctggtgtacac 111
||||||||||||||||||||
Sbjct: 904 gacggcgcgctggtgtacac 923
>gb|CK204447.1|CK204447 FGAS012983 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 845
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 115 cctgttcgacgccacggtagacgcgctggtgg 146
|||||||||||||| ||| ||||| |||||||
Sbjct: 796 cctgttcgacgccatggtggacgccctggtgg 827
>gb|CK215636.1|CK215636 FGAS027604 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 751
Score = 40.1 bits (20), Expect = 0.16
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 91 ggacggcgcgctggtgtacacgaacctgttcgacgc 126
|||||||| |||||||||||| || ||||||||||
Sbjct: 591 ggacggcgggctggtgtacacccacatgttcgacgc 556
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,815
Number of Sequences: 636343
Number of extensions: 155815
Number of successful extensions: 43461
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43400
Number of HSP's gapped (non-prelim): 58
length of query: 577
length of database: 367,240,239
effective HSP length: 19
effective length of query: 558
effective length of database: 355,149,722
effective search space: 198173544876
effective search space used: 198173544876
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)