BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK208982.1|CK208982 FGAS020711 Triticum aestivum FGAS: L... 254 2e-065
gb|CD454004.1|CD454004 WHE0952_G06_M12ZT CS wheat pre-anthe... 240 2e-061
gb|CD878248.1|CD878248 AZO4.102E13R011122 AZO4 Triticum aes... 224 1e-056
gb|CD878247.1|CD878247 AZO4.102E13F010930 AZO4 Triticum aes... 218 9e-055
gb|BE489917.1|BE489917 WHE0363_C11_E21ZS Wheat cold-stresse... 214 1e-053
gb|CV773115.1|CV773115 FGAS067511 Triticum aestivum FGAS: L... 202 5e-050
gb|CK201771.1|CK201771 FGAS010291 Triticum aestivum FGAS: L... 145 1e-032
gb|CD861393.1|CD861393 AZO1.001H06F000626 AZO1 Triticum aes... 111 1e-022
gb|BE498338.1|BE498338 WHE0952_G06_M12ZS Wheat pre-anthesis... 88 2e-015
gb|BQ578827.1|BQ578827 WHE0407_C01_F01ZS Wheat etiolated se... 78 2e-012
gb|CD861394.1|CD861394 AZO1.001H06R000629 AZO1 Triticum aes... 76 8e-012
gb|CD922641.1|CD922641 G750.104D24F010529 G750 Triticum aes... 70 5e-010
gb|BE419468.1|BE419468 WWS012.E11R000101 ITEC WWS Wheat Scu... 58 2e-006
gb|CA610233.1|CA610233 wr1.pk0115.f8 wr1 Triticum aestivum ... 50 5e-004
gb|CA741213.1|CA741213 wia1c.pk001.g20 wia1c Triticum aesti... 48 0.002
gb|AJ601597.1|AJ601597 AJ601597 T05 Triticum aestivum cDNA ... 46 0.007
gb|BJ237728.1|BJ237728 BJ237728 Y. Ogihara unpublished cDNA... 44 0.029
gb|BJ292600.1|BJ292600 BJ292600 Y. Ogihara unpublished cDNA... 44 0.029
gb|BJ299052.1|BJ299052 BJ299052 Y. Ogihara unpublished cDNA... 44 0.029
gb|AJ603960.1|AJ603960 AJ603960 T07 Triticum aestivum cDNA ... 44 0.029
gb|CK153386.1|CK153386 FGAS031987 Triticum aestivum FGAS: T... 44 0.029
gb|CK200385.1|CK200385 FGAS008899 Triticum aestivum FGAS: L... 44 0.029
gb|CV779344.1|CV779344 FGAS073753 Triticum aestivum FGAS: L... 44 0.029
gb|BF482404.1|BF482404 WHE1796_C06_E12ZS Wheat pre-anthesis... 42 0.11
gb|BI479829.1|BI479829 WHE3452_F01_K02ZS Wheat pre-anthesis... 42 0.11
gb|BJ259073.1|BJ259073 BJ259073 Y. Ogihara unpublished cDNA... 42 0.11
gb|BJ259850.1|BJ259850 BJ259850 Y. Ogihara unpublished cDNA... 42 0.11
gb|CA593436.1|CA593436 wpa1c.pk003.c18 wpa1c Triticum aesti... 42 0.11
gb|CA594125.1|CA594125 wpa1c.pk004.h21 wpa1c Triticum aesti... 42 0.11
gb|CA594664.1|CA594664 wpa1c.pk005.h1 wpa1c Triticum aestiv... 42 0.11
gb|CA596016.1|CA596016 wpa1c.pk011.e8 wpa1c Triticum aestiv... 42 0.11
gb|CA679468.1|CA679468 wlm4.pk0015.g3 wlm4 Triticum aestivu... 42 0.11
gb|CA741250.1|CA741250 wia1c.pk001.j13 wia1c Triticum aesti... 42 0.11
gb|CA741830.1|CA741830 wia1c.pk002.a17 wia1c Triticum aesti... 42 0.11
gb|CV772210.1|CV772210 FGAS066603 Triticum aestivum FGAS: L... 42 0.11
gb|CV774328.1|CV774328 FGAS068726 Triticum aestivum FGAS: L... 42 0.11
gb|BG313067.1|BG313067 WHE0092_B02_C04ZS Wheat endosperm cD... 40 0.45
gb|BJ208902.1|BJ208902 BJ208902 Y. Ogihara unpublished cDNA... 40 0.45
gb|BJ260680.1|BJ260680 BJ260680 Y. Ogihara unpublished cDNA... 40 0.45
gb|CA497517.1|CA497517 WHE3228_H05_P10ZT Wheat meiotic anth... 40 0.45
gb|CA596532.1|CA596532 wpa1c.pk013.i20 wpa1c Triticum aesti... 40 0.45
gb|CA678531.1|CA678531 wlm4.pk0003.a3 wlm4 Triticum aestivu... 40 0.45
gb|CA678532.1|CA678532 wlm4.pk0003.b3 wlm4 Triticum aestivu... 40 0.45
gb|CA678533.1|CA678533 wlm4.pk0003.a4 wlm4 Triticum aestivu... 40 0.45
gb|CA708917.1|CA708917 wdk2c.pk010.j18 wdk2c Triticum aesti... 40 0.45
gb|CA717850.1|CA717850 wdk4c.pk006.l23 wdk4c Triticum aesti... 40 0.45
gb|CA722676.1|CA722676 wds1c.pk004.o9.f wds1c Triticum mono... 40 0.45
gb|CD921586.1|CD921586 G750.001C17F010309 G750 Triticum aes... 40 0.45
gb|CF133904.1|CF133904 WHE4365_B01_D01ZT Wheat meiotic flor... 40 0.45
gb|CK217376.1|CK217376 FGAS029378 Triticum aestivum FGAS: L... 40 0.45
gb|AJ716906.1|AJ716906 AJ716906 Triticum turgidum subsp. du... 40 0.45
gb|CV765603.1|CV765603 FGAS059990 Triticum aestivum FGAS: L... 40 0.45
gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC ... 40 0.45
>gb|CK208982.1|CK208982 FGAS020711 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1116
Score = 254 bits (128), Expect = 2e-065
Identities = 224/256 (87%)
Strand = Plus / Minus
Query: 258 gtcaaattttcggggatgttgacattgaaatggacatattgatctccgtggtacggtgag 317
|||||||| ||||||| ||||||||||||||||||||||| ||||| | | ||||
Sbjct: 548 gtcaaattcacggggattttgacattgaaatggacatattggtctccataagaatatgag 489
Query: 318 tttcttgtcttgatcccttttcctctcagaactaccctctgaccaggttgagtaccgggc 377
|||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 488 tttcttgtcttgattccttttcctctcagaacaaccttctgaccaggttgagtaccaggc 429
Query: 378 ttgatctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaatt 437
|| | |||||||||||| |||||| ||||||||| |||||||| || ||||||| ||||
Sbjct: 428 ttaacctttagaacaacatctccagcgagagttggcacttgaacagtacctcccagaatt 369
Query: 438 gcctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaaca 497
|||||||||||||| | ||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 368 gcctgagtcacatttaagacagcatctacatggatatcacctttctctctccggaatact 309
Query: 498 ggatcctcacgaacct 513
|||||| |||||||||
Sbjct: 308 ggatccccacgaacct 293
Score = 58.0 bits (29), Expect = 2e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccag 690
|||| |||||||| || || || ||||| | ||||||||| ||||| ||||| || ||||
Sbjct: 172 ttcctggcacaaccttcttccccctgcacgacttgcagaaatcctttacagtcttgccag 113
Query: 691 aaccaccacattttgtgcaggttgattgcatcctgaa 727
| |||||||| | ||||| ||||||||||| |||||
Sbjct: 112 atccaccacactgcgtgcatgttgattgcattctgaa 76
>gb|CD454004.1|CD454004 WHE0952_G06_M12ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0952_G06_M12, mRNA sequence
Length = 742
Score = 240 bits (121), Expect = 2e-061
Identities = 223/257 (86%)
Strand = Plus / Plus
Query: 257 cgtcaaattttcggggatgttgacattgaaatggacatattgatctccgtggtacggtga 316
||||||||| | ||||| ||||||||||||||||||||||| ||||| | | ||
Sbjct: 400 cgtcaaattcacagggattttgacattgaaatggacatattggtctccatatgaatacga 459
Query: 317 gtttcttgtcttgatcccttttcctctcagaactaccctctgaccaggttgagtaccggg 376
|||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct: 460 gtttctcgtcttgattccttttcctctcagaacaaccttctgaccaggttgagtaccagg 519
Query: 377 cttgatctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaat 436
||| | |||||||||||| |||||| ||||||||| |||||||| || ||||||| |||
Sbjct: 520 cttaacctttagaacaacatctccagcgagagttggcacttgaacagtacctcccagaat 579
Query: 437 tgcctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaac 496
||||||||||||||| | ||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 580 tgcctgagtcacatttaagacagcatctacatggatatcacctttctctctccggaatac 639
Query: 497 aggatcctcacgaacct 513
||||||||||||||||
Sbjct: 640 tggatcctcacgaacct 656
>gb|CD878248.1|CD878248 AZO4.102E13R011122 AZO4 Triticum aestivum cDNA clone AZO4102E13,
mRNA sequence
Length = 735
Score = 224 bits (113), Expect = 1e-056
Identities = 221/257 (85%)
Strand = Plus / Plus
Query: 257 cgtcaaattttcggggatgttgacattgaaatggacatattgatctccgtggtacggtga 316
||||||||| | ||||| ||||||||||||||||||||||| ||||| | | ||
Sbjct: 378 cgtcaaattcacagggattttgacattgaaatggacatattggtctccatatgaatacga 437
Query: 317 gtttcttgtcttgatcccttttcctctcagaactaccctctgaccaggttgagtaccggg 376
|||||| |||||||| ||||||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct: 438 gtttctcgtcttgattccttttcctctcaaaacaaccttctgaccaggttgagtaccagg 497
Query: 377 cttgatctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaat 436
||| | ||||||||||| |||||| ||||||||| |||||||| || ||||||| |||
Sbjct: 498 cttaacctttagaacaaaatctccagcgagagttggcacttgaacagtacctcccagaat 557
Query: 437 tgcctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaac 496
||||||||||||||| | ||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 558 tgcctgagtcacatttaagacagcatctacatggatatcacctttctctctccggaatac 617
Query: 497 aggatcctcacgaacct 513
||||||||||||||||
Sbjct: 618 tggatcctcacgaacct 634
>gb|CD878247.1|CD878247 AZO4.102E13F010930 AZO4 Triticum aestivum cDNA clone AZO4102E13,
mRNA sequence
Length = 728
Score = 218 bits (110), Expect = 9e-055
Identities = 170/190 (89%)
Strand = Plus / Minus
Query: 324 gtcttgatcccttttcctctcagaactaccctctgaccaggttgagtaccgggcttgatc 383
|||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||| | |
Sbjct: 724 gtcttgattccttttcctctcagaacaaccttctgaccaggttgagtaccaggcttaacc 665
Query: 384 tttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcctga 443
||||||||||| |||||| ||||||||| |||||||| || ||||||| ||||||||||
Sbjct: 664 tttagaacaacatctccagcgagagttggcacttgaacagtacctcccagaattgcctga 605
Query: 444 gtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacaggatcc 503
|||||||| | ||||||||| ||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 604 gtcacatttaagacagcatctacatggatatcacctttctctctccggaatactggatcc 545
Query: 504 tcacgaacct 513
||||||||||
Sbjct: 544 tcacgaacct 535
Score = 58.0 bits (29), Expect = 2e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccag 690
|||| |||||||| || || || ||||| | ||||||||| ||||| ||||| || ||||
Sbjct: 414 ttcctggcacaaccttcttccccctgcacgacttgcagaaatcctttacagtcttgccag 355
Query: 691 aaccaccacattttgtgcaggttgattgcatcctgaa 727
| |||||||| | ||||| ||||||||||| |||||
Sbjct: 354 atccaccacactgcgtgcatgttgattgcattctgaa 318
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 294 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 235
Query: 811 ca 812
||
Sbjct: 234 ca 233
>gb|BE489917.1|BE489917 WHE0363_C11_E21ZS Wheat cold-stressed seedling cDNA library Triticum
aestivum cDNA clone WHE0363_C11_E21, mRNA sequence
Length = 501
Score = 214 bits (108), Expect = 1e-053
Identities = 216/252 (85%)
Strand = Plus / Minus
Query: 1054 tctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttagag 1113
||||||| ||||||||||||||||||||||| | | | |||||| ||||||||| | ||
Sbjct: 463 tctcatattgatcagggccaacctgatcatagaccgcttttttttcttcatccttcaaag 404
Query: 1114 tctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttg 1173
||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||
Sbjct: 403 tctcataagctttctgaacctcttgaaactttttttctgcatcggcatcgcctttatttg 344
Query: 1174 tgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggctgg 1233
| ||||||||||||||||| |||||| | ||||| ||||| |||||||| |||||| ||
Sbjct: 343 tatctggatggagcttcttcgcaagcgcgtaatacgccttcttgatctcgccctggccgg 284
Query: 1234 cgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtcccgt 1293
|| ||| || || |||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct: 283 cgtccttcctcacaccgagcacgtcgtagtagtccctcaccgccacaggcctggtcccgt 224
Query: 1294 ggaaggacctgc 1305
||||| ||||||
Sbjct: 223 ggaagaacctgc 212
>gb|CV773115.1|CV773115 FGAS067511 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 817
Score = 202 bits (102), Expect = 5e-050
Identities = 207/242 (85%)
Strand = Plus / Minus
Query: 1064 atcagggccaacctgatcatataatgatcttttttgttcatcctttagagtctcataagc 1123
||||||||||||||||||||| | | | |||||| |||||||| | ||||||||||||
Sbjct: 629 atcagggccaacctgatcatagaccgcttttttttcatcatccttcaaagtctcataagc 570
Query: 1124 tcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgtgtctggatg 1183
| ||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 569 tttctgaacctcttgaaactttttttctgcatcagcatcgcctttatttgtatctggatg 510
Query: 1184 gagcttctttgcaagcccataataggcctttttgatctccgcctggctggcgctcttgct 1243
|||||||||||||||| | ||||| ||||| |||||||| |||||| ||| ||| ||
Sbjct: 509 gagcttctttgcaagcgcgtaatacgccttcttgatctcgccctggccggcatccttcct 450
Query: 1244 gacgccgagcacatcgtagtagtcccttgccgccaccggcctggtcccgtggaaggacct 1303
||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct: 449 aacgccgagcacgtcgtagtagtccctcaccgccacgggcctggtcccgtggaagaacct 390
Query: 1304 gc 1305
||
Sbjct: 389 gc 388
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1394 ggagagggagcggcgggcgagcaggagc 1421
||||||||||||||||||||| ||||||
Sbjct: 260 ggagagggagcggcgggcgaggaggagc 233
>gb|CK201771.1|CK201771 FGAS010291 Triticum aestivum FGAS: Library 3 Gate 6 Triticum aestivum
cDNA, mRNA sequence
Length = 829
Score = 145 bits (73), Expect = 1e-032
Identities = 172/205 (83%)
Strand = Plus / Minus
Query: 1101 tcatcctttagagtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgca 1160
|||||||| | |||||||||||| ||||||||||| |||| |||||||| |||
Sbjct: 594 tcatccttcaaagtctcataagcgttcggaacctcttgacactttttgtctgcatcagca 535
Query: 1161 tcacctttatttgtgtctggatggagcttctttgcaagcccataataggcctttttgatc 1220
|| ||||||||||| | ||||||||||||||| |||||| | ||||| ||||| ||||||
Sbjct: 534 tcgcctttatttgtatatggatggagcttcttcgcaagcgcgtaatacgccttcttgatc 475
Query: 1221 tccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccacc 1280
|| ||||||| ||| ||| || ||||||||||| |||||||||||||| |||||||
Sbjct: 474 tcggcctggccggcatccttcctaacgccgagcacgtcgtagtagtccctcaccgccacg 415
Query: 1281 ggcctggtcccgtggaaggacctgc 1305
|||||||||||||||||| ||||||
Sbjct: 414 ggcctggtcccgtggaagaacctgc 390
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1394 ggagagggagcggcgggcgagcaggagc 1421
||||||||||||||||||||| ||||||
Sbjct: 262 ggagagggagcggcgggcgaggaggagc 235
>gb|CD861393.1|CD861393 AZO1.001H06F000626 AZO1 Triticum aestivum cDNA clone AZO1001H06,
mRNA sequence
Length = 513
Score = 111 bits (56), Expect = 1e-022
Identities = 155/188 (82%)
Strand = Plus / Minus
Query: 192 gcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagctcccgctgt 251
|||||||| ||||| ||||| | ||| |||||| |||| ||||||| ||| ||||||
Sbjct: 196 gcgtccttgtcgtcctcgcccttctcttccttctcgaactcctcgagaagcatgcgctgt 137
Query: 252 ctagacgtcaaattttcggggatgttgacattgaaatggacatattgatctccgtggtac 311
| ||||||||| | ||||| ||||||||||||||||||||||| ||||| | |
Sbjct: 136 ttctgcgtcaaattcacagggattttgacattgaaatggacatattggtctccatatgaa 77
Query: 312 ggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgaccaggttgagta 371
||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct: 76 tacgagtttcttgtcttgattccttttcctctcagaacaaccttctgaccaggttgagta 17
Query: 372 ccgggctt 379
|| |||||
Sbjct: 16 ccaggctt 9
>gb|BE498338.1|BE498338 WHE0952_G06_M12ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0952_G06_M12, mRNA sequence
Length = 489
Score = 87.7 bits (44), Expect = 2e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 442 gagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacaggat 501
|||||||||| | ||||||||| ||||| ||||||||||||||||| ||||| || ||||
Sbjct: 489 gagtcacatttaagacagcatctacatggatatcacctttctctctccggaatactggat 430
Query: 502 cctcacgaacct 513
||||||||||||
Sbjct: 429 cctcacgaacct 418
Score = 58.0 bits (29), Expect = 2e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccag 690
|||| |||||||| || || || ||||| | ||||||||| ||||| ||||| || ||||
Sbjct: 297 ttcctggcacaaccttcttccccctgcacgacttgcagaaatcctttacagtcttgccag 238
Query: 691 aaccaccacattttgtgcaggttgattgcatcctgaa 727
| |||||||| | ||||| ||||||||||| |||||
Sbjct: 237 atccaccacactgcgtgcatgttgattgcattctgaa 201
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 177 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 118
Query: 811 ca 812
||
Sbjct: 117 ca 116
>gb|BQ578827.1|BQ578827 WHE0407_C01_F01ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0407_C01_F01, mRNA
sequence
Length = 626
Score = 77.8 bits (39), Expect = 2e-012
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 455 gacagcatcaacatgaatatcacctttctctcttcggaaaacaggatcctcacgaacct 513
||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 614 gacagcatctacatggatatcacctttctctctccggaatactggatcctcacgaacct 556
Score = 58.0 bits (29), Expect = 2e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccag 690
|||| |||||||| || || || ||||| | ||||||||| ||||| ||||| || ||||
Sbjct: 435 ttcctggcacaaccttcttccccctgcacgacttgcagaaatcctttacagtcttgccag 376
Query: 691 aaccaccacattttgtgcaggttgattgcatcctgaa 727
| |||||||| | ||||| ||||||||||| |||||
Sbjct: 375 atccaccacactgcgtgcatgttgattgcattctgaa 339
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 315 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 256
Query: 811 ca 812
||
Sbjct: 255 ca 254
>gb|CD861394.1|CD861394 AZO1.001H06R000629 AZO1 Triticum aestivum cDNA clone AZO1001H06,
mRNA sequence
Length = 478
Score = 75.8 bits (38), Expect = 8e-012
Identities = 128/158 (81%)
Strand = Plus / Plus
Query: 192 gcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatcagctcccgctgt 251
|||||||| ||||| ||||| | ||| |||||| |||| ||||||| ||| ||||||
Sbjct: 318 gcgtccttgtcgtcctcgcccttctcttccttctcgaactcctcgagaagcatgcgctgt 377
Query: 252 ctagacgtcaaattttcggggatgttgacattgaaatggacatattgatctccgtggtac 311
| ||||||||| | ||||| ||||||||||||||||||||||| ||||| | |
Sbjct: 378 ttctgcgtcaaattcacagggattttgacattgaaatggacatattggtctccatatgaa 437
Query: 312 ggtgagtttcttgtcttgatcccttttcctctcagaac 349
||||||||||||||||| |||||||||||||||||
Sbjct: 438 tacgagtttcttgtcttgattccttttcctctcagaac 475
>gb|CD922641.1|CD922641 G750.104D24F010529 G750 Triticum aestivum cDNA clone G750104D24,
mRNA sequence
Length = 539
Score = 69.9 bits (35), Expect = 5e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggctt 379
||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 60 ccttttcctctcagaacaaccttctgaccaggttgagtaccaggctt 14
>gb|BE419468.1|BE419468 WWS012.E11R000101 ITEC WWS Wheat Scutellum Library Triticum
aestivum cDNA clone WWS012.E11, mRNA sequence
Length = 428
Score = 58.0 bits (29), Expect = 2e-006
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccag 690
|||| |||||||| || || || ||||| | ||||||||| ||||| ||||| || ||||
Sbjct: 360 ttcctggcacaaccttcttccccctgcacgacttgcagaaatcctttacagtcttgccag 301
Query: 691 aaccaccacattttgtgcaggttgattgcatcctgaa 727
| |||||||| | ||||| ||||||||||| |||||
Sbjct: 300 atccaccacactgcgtgcatgttgattgcattctgaa 264
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 751 atcctgaacccctgcaagatagacatgtttcaggtgtggttccaggaggcacaccggctc 810
|||| ||||||||||||| |||||| ||||| ||| ||||||| | ||| ||||| ||||
Sbjct: 240 atccagaacccctgcaagctagacaagtttcgggtttggttcccgcaggtacaccagctc 181
Query: 811 ca 812
||
Sbjct: 180 ca 179
>gb|CA610233.1|CA610233 wr1.pk0115.f8 wr1 Triticum aestivum cDNA clone wr1.pk0115.f8 5'
end, mRNA sequence
Length = 310
Score = 50.1 bits (25), Expect = 5e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 962 tccaccaccgccaccgccaccacca 986
|||||||||||||||||||||||||
Sbjct: 55 tccaccaccgccaccgccaccacca 79
>gb|CA741213.1|CA741213 wia1c.pk001.g20 wia1c Triticum aestivum cDNA clone wia1c.pk001.g20
5' end, mRNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 141 ccaccaccgccaccgccaccacca 164
>gb|AJ601597.1|AJ601597 AJ601597 T05 Triticum aestivum cDNA clone E01_T05_plate_15, mRNA
sequence
Length = 471
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1241 gctgacgccgagcacatcgtagt 1263
|||||||||||||||||||||||
Sbjct: 250 gctgacgccgagcacatcgtagt 228
>gb|BJ237728.1|BJ237728 BJ237728 Y. Ogihara unpublished cDNA library, Wh_e Triticum
aestivum cDNA clone whe10p23 3', mRNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 414 ccaccaccgccaccgccaccac 435
>gb|BJ292600.1|BJ292600 BJ292600 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl28g22 5', mRNA sequence
Length = 577
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 62 ccaccaccgccaccgccaccac 41
>gb|BJ299052.1|BJ299052 BJ299052 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl28g22 3', mRNA sequence
Length = 505
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 469 ccaccaccgccaccgccaccac 490
>gb|AJ603960.1|AJ603960 AJ603960 T07 Triticum aestivum cDNA clone C11_T07_plate_21, mRNA
sequence
Length = 218
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1242 ctgacgccgagcacatcgtagt 1263
||||||||||||||||||||||
Sbjct: 218 ctgacgccgagcacatcgtagt 197
>gb|CK153386.1|CK153386 FGAS031987 Triticum aestivum FGAS: TaLt2 Triticum aestivum cDNA,
mRNA sequence
Length = 897
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 542 ccaccaccgccaccgccaccac 521
>gb|CK200385.1|CK200385 FGAS008899 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 813
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 783 ccaccaccgccaccgccaccac 762
>gb|CV779344.1|CV779344 FGAS073753 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 852
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccac 984
||||||||||||||||||||||
Sbjct: 413 ccaccaccgccaccgccaccac 392
>gb|BF482404.1|BF482404 WHE1796_C06_E12ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1796_C06_E12, mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 320 ccaccgccaccgccaccacca 340
>gb|BI479829.1|BI479829 WHE3452_F01_K02ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE3452_F01_K02, mRNA sequence
Length = 689
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 962 tccaccaccgccaccgccaccacca 986
|||||||||||| ||||||||||||
Sbjct: 200 tccaccaccgccgccgccaccacca 224
>gb|BJ259073.1|BJ259073 BJ259073 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh14m23 5', mRNA sequence
Length = 176
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 65 ccaccgccaccgccaccacca 85
>gb|BJ259850.1|BJ259850 BJ259850 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh22i12 5', mRNA sequence
Length = 172
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 42 ccaccgccaccgccaccacca 62
>gb|CA593436.1|CA593436 wpa1c.pk003.c18 wpa1c Triticum aestivum cDNA clone wpa1c.pk003.c18
5' end, mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 37 ccaccgccaccgccaccacca 57
>gb|CA594125.1|CA594125 wpa1c.pk004.h21 wpa1c Triticum aestivum cDNA clone wpa1c.pk004.h21
5' end, mRNA sequence
Length = 547
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 21 ccaccgccaccgccaccacca 41
>gb|CA594664.1|CA594664 wpa1c.pk005.h1 wpa1c Triticum aestivum cDNA clone wpa1c.pk005.h1 5'
end, mRNA sequence
Length = 159
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 50 ccaccgccaccgccaccacca 70
>gb|CA596016.1|CA596016 wpa1c.pk011.e8 wpa1c Triticum aestivum cDNA clone wpa1c.pk011.e8 5'
end, mRNA sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 42 ccaccgccaccgccaccacca 62
>gb|CA679468.1|CA679468 wlm4.pk0015.g3 wlm4 Triticum aestivum cDNA clone wlm4.pk0015.g3 5'
end, mRNA sequence
Length = 227
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 30 ccaccgccaccgccaccacca 50
>gb|CA741250.1|CA741250 wia1c.pk001.j13 wia1c Triticum aestivum cDNA clone wia1c.pk001.j13
5' end, mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 47 ccaccgccaccgccaccacca 67
>gb|CA741830.1|CA741830 wia1c.pk002.a17 wia1c Triticum aestivum cDNA clone wia1c.pk002.a17
5' end, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 50 ccaccgccaccgccaccacca 70
>gb|CV772210.1|CV772210 FGAS066603 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 962 tccaccaccgccaccgccaccacca 986
|||||||||||| ||||||||||||
Sbjct: 296 tccaccaccgccgccgccaccacca 272
>gb|CV774328.1|CV774328 FGAS068726 Triticum aestivum FGAS: Library 2 Gate 3 Triticum aestivum
cDNA, mRNA sequence
Length = 879
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1394 ggagagggagcggcgggcgagcaggagca 1422
||||| |||||||||||||||||| ||||
Sbjct: 182 ggagatggagcggcgggcgagcagcagca 210
>gb|BG313067.1|BG313067 WHE0092_B02_C04ZS Wheat endosperm cDNA library Triticum aestivum
cDNA clone WHE0092_B02_C04, mRNA sequence
Length = 166
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||| ||||||||||||
Sbjct: 134 ccaccaccgccgccgccaccacca 111
>gb|BJ208902.1|BJ208902 BJ208902 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh11i22 5', mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 71 ggaggagaggaagcggcgggcgag 48
>gb|BJ260680.1|BJ260680 BJ260680 Y. Ogihara unpublished cDNA library, Wh_h Triticum aestivum
cDNA clone whh26f21 5', mRNA sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 111 ggaggagaggaagcggcgggcgag 88
>gb|CA497517.1|CA497517 WHE3228_H05_P10ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3228_H05_P10, mRNA sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 77 ccaccgccaccgccaccacc 96
>gb|CA596532.1|CA596532 wpa1c.pk013.i20 wpa1c Triticum aestivum cDNA clone wpa1c.pk013.i20 5'
end, mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 94 ggaggagaggaagcggcgggcgag 71
>gb|CA678531.1|CA678531 wlm4.pk0003.a3 wlm4 Triticum aestivum cDNA clone wlm4.pk0003.a3 5'
end, mRNA sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 109 ggaggagaggaagcggcgggcgag 86
>gb|CA678532.1|CA678532 wlm4.pk0003.b3 wlm4 Triticum aestivum cDNA clone wlm4.pk0003.b3 5'
end, mRNA sequence
Length = 401
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 109 ggaggagaggaagcggcgggcgag 86
>gb|CA678533.1|CA678533 wlm4.pk0003.a4 wlm4 Triticum aestivum cDNA clone wlm4.pk0003.a4 5'
end, mRNA sequence
Length = 291
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 109 ggaggagaggaagcggcgggcgag 86
>gb|CA708917.1|CA708917 wdk2c.pk010.j18 wdk2c Triticum aestivum cDNA clone wdk2c.pk010.j18
5' end, mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 117 ccaccgccaccgccaccacc 136
>gb|CA717850.1|CA717850 wdk4c.pk006.l23 wdk4c Triticum aestivum cDNA clone wdk4c.pk006.l23 5'
end, mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 116 ggaggagaggaagcggcgggcgag 93
>gb|CA722676.1|CA722676 wds1c.pk004.o9.f wds1c Triticum monococcum cDNA clone
wds1c.pk004.o9.f 3' end, mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1391 ggaggagagggagcggcgggcgag 1414
|||||||||| |||||||||||||
Sbjct: 48 ggaggagaggaagcggcgggcgag 25
>gb|CD921586.1|CD921586 G750.001C17F010309 G750 Triticum aestivum cDNA clone G750001C17,
mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacc 982
||||||||||||||||||||
Sbjct: 92 ccaccaccgccaccgccacc 73
>gb|CF133904.1|CF133904 WHE4365_B01_D01ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4365_B01_D01, mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 52 ccaccgccaccgccaccacc 71
>gb|CK217376.1|CK217376 FGAS029378 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1069
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 966 ccaccgccaccgccaccacc 985
||||||||||||||||||||
Sbjct: 424 ccaccgccaccgccaccacc 405
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 462,823
Number of Sequences: 636343
Number of extensions: 462823
Number of successful extensions: 134907
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134750
Number of HSP's gapped (non-prelim): 152
length of query: 1565
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1545
effective length of database: 354,513,379
effective search space: 547723170555
effective search space used: 547723170555
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)