BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ805546.1|BQ805546 WHE3568_C05_E10ZS Wheat developing g... 234 6e-060
gb|BQ162349.1|BQ162349 WHE0751_G10_M19ZY Wheat heat-stresse... 82 6e-014
gb|CA652956.1|CA652956 wre1n.pk156.f8 wre1n Triticum aestiv... 80 2e-013
gb|CK194450.1|CK194450 FGAS002880 Triticum aestivum FGAS: L... 78 9e-013
gb|CA701680.1|CA701680 wkm2c.pk005.e23 wkm2c Triticum aesti... 58 8e-007
gb|BE415956.1|BE415956 MUG002.G09R990520 ITEC MUG Wheat Spi... 44 0.012
gb|BE417540.1|BE417540 MUG022.A11R990620 ITEC MUG Wheat Spi... 44 0.012
gb|BQ839503.1|BQ839503 WHE4166_H04_P08ZS Wheat CS whole pla... 44 0.012
gb|CA605379.1|CA605379 wr1.pk0053.e2 wr1 Triticum aestivum ... 44 0.012
gb|CA691627.1|CA691627 wlm96.pk049.e5 wlm96 Triticum aestiv... 44 0.012
>gb|BQ805546.1|BQ805546 WHE3568_C05_E10ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3568_C05_E10, mRNA sequence
Length = 721
Score = 234 bits (118), Expect = 6e-060
Identities = 235/277 (84%)
Strand = Plus / Minus
Query: 360 ttgatcttggggctttccagccccttgtgtgagaaaccatatagccgaagcacctggttg 419
|||||||| |||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct: 366 ttgatcttagggctttccagccccttgtgtgcgaaaccatacaggcgcagcacctggtta 307
Query: 420 tcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccactgggtaatcccca 479
|||||||||||||| ||||||||||| ||| |||| || || || ||||||||||| |||
Sbjct: 306 tcggcaaaattaaatgctcgctccatactcttgagacaccggtctactgggtaatcacca 247
Query: 480 tagctcccacatggcttgcacccaacaaagtgagtcacgaaaggccaccgctcgtcgccg 539
||||| || ||||||||||||||||||||||| ||||| || ||||||||||| || ||
Sbjct: 246 tagcttccgcatggcttgcacccaacaaagtgtgtcacaaatggccaccgctcatcccca 187
Query: 540 aggcctnnntggtgattctccatcatctnntcatacttatcnaccnacncagcccagaag 599
|| ||| ||||| ||||||||||||| || ||||| || ||| | ||||||||||
Sbjct: 186 agccctggatggtggttctccatcatctcctcgtacttgtccaccagcccagcccagaaa 127
Query: 600 ccatgcnagtagtaggaattctcaatgaacaccttgt 636
|| ||| ||||||| |||||||| || |||||||||
Sbjct: 126 ccgtgcaagtagtatgaattctctatatacaccttgt 90
>gb|BQ162349.1|BQ162349 WHE0751_G10_M19ZY Wheat heat-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0751_G10_M19, mRNA
sequence
Length = 286
Score = 81.8 bits (41), Expect = 6e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 360 ttgatcttggggctttccagccccttgtgtgagaaaccatatagccgaagcacctggttg 419
|||||||| |||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct: 222 ttgatcttagggctttccagccccttgtgtgcgaaaccatacaggcgcagcacctggtta 281
Query: 420 tcggc 424
|||||
Sbjct: 282 tcggc 286
>gb|CA652956.1|CA652956 wre1n.pk156.f8 wre1n Triticum aestivum cDNA clone wre1n.pk156.f8 5'
end, mRNA sequence
Length = 529
Score = 79.8 bits (40), Expect = 2e-013
Identities = 129/160 (80%)
Strand = Plus / Minus
Query: 408 agcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccact 467
||||||||||||||||| || || || || |||||||||| ||||||| |||||||
Sbjct: 179 agcacctggttgtcggcgaagttgaaggcgcgctccatgccggtgaggcactgctccacc 120
Query: 468 gggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaaggccac 527
||||| || || ||||| || || ||||||| || || ||||| || | ||| ||||||
Sbjct: 119 gggtagtcgccgtagctgccgcagggcttgcntccgacgaagtgcgtgatgaagggccac 60
Query: 528 cgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||||||||| || ||||| |||||||||||||
Sbjct: 59 cgctcgtcgccgagccccgggtggtgcttctccatcatct 20
>gb|CK194450.1|CK194450 FGAS002880 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 828
Score = 77.8 bits (39), Expect = 9e-013
Identities = 129/160 (80%)
Strand = Plus / Plus
Query: 408 agcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccact 467
|||||||||||||||||||| ||||| || |||||||||| ||||||| |||||||
Sbjct: 520 agcacctggttgtcggcaaatttaaaggcgcgctccatgccggtgaggcactgctccacc 579
Query: 468 gggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaaggccac 527
||||| ||||| || || || ||||||||||||| ||||| || || | ||| |||||
Sbjct: 580 gggtattccccgtatctgccggatggcttgcaccccacaaattgtgttatgaagggccag 639
Query: 528 cgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||| || || || || ||||| |||||||||||||
Sbjct: 640 cgctcttccccaagccccgggtggtgcttctccatcatct 679
>gb|CA701680.1|CA701680 wkm2c.pk005.e23 wkm2c Triticum aestivum cDNA clone wkm2c.pk005.e23
5' end, mRNA sequence
Length = 562
Score = 58.0 bits (29), Expect = 8e-007
Identities = 141/175 (80%), Gaps = 5/175 (2%)
Strand = Plus / Minus
Query: 467 tgggtaatccccatagctcccacat-ggcttgcaccca-acaaagtgagtcacgaaaggc 524
||||||||| |||||||| || ||| ||||||||||| |||||||| ||||||| |||
Sbjct: 482 tgggtaatcaccatagctnccgcattggcttgcacccggacaaagtgtgtcacgattggc 423
Query: 525 caccgctcgtcgccgaggcctnnntgg-tgattctccatcatctnntcatacttatcnac 583
|||||||| || || || ||| ||| || ||||||||||||| || ||||| || ||
Sbjct: 422 caccgctcatccccaagccctggatggttgtttctccatcatctcctcgtacttgtccac 363
Query: 584 cna-cncag-cccagaagccatgcnagtagtaggaattctcaatgaacaccttgt 636
| | | ||| ||||||| || ||| ||||||| |||||||| || |||||||||
Sbjct: 362 ccagcccagccccagaaaccgtgcaagtagtatgaattctctatatacaccttgt 308
>gb|BE415956.1|BE415956 MUG002.G09R990520 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG002.G09, mRNA sequence
Length = 989
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 catggcttgcacccaacaaagtgagt 514
|||||||||||||| |||||||||||
Sbjct: 454 catggcttgcacccgacaaagtgagt 429
>gb|BE417540.1|BE417540 MUG022.A11R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG022.A11, mRNA sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 catggcttgcacccaacaaagtgagt 514
|||||||||||||| |||||||||||
Sbjct: 454 catggcttgcacccgacaaagtgagt 429
>gb|BQ839503.1|BQ839503 WHE4166_H04_P08ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4166_H04_P08, mRNA sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 catggcttgcacccaacaaagtgagt 514
|||||||||||||| |||||||||||
Sbjct: 435 catggcttgcacccgacaaagtgagt 460
>gb|CA605379.1|CA605379 wr1.pk0053.e2 wr1 Triticum aestivum cDNA clone wr1.pk0053.e2 5'
end, mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 catggcttgcacccaacaaagtgagt 514
|||||||||||||| |||||||||||
Sbjct: 166 catggcttgcacccgacaaagtgagt 141
>gb|CA691627.1|CA691627 wlm96.pk049.e5 wlm96 Triticum aestivum cDNA clone wlm96.pk049.e5 5'
end, mRNA sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 catggcttgcacccaacaaagtgagt 514
|||||||||||||| |||||||||||
Sbjct: 300 catggcttgcacccgacaaagtgagt 275
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,083
Number of Sequences: 636343
Number of extensions: 94083
Number of successful extensions: 23740
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23721
Number of HSP's gapped (non-prelim): 17
length of query: 677
length of database: 367,240,239
effective HSP length: 19
effective length of query: 658
effective length of database: 355,149,722
effective search space: 233688517076
effective search space used: 233688517076
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)