BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2418885.2.3
         (568 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA705404.1|CA705404  wdk1c.pk014.k15 wdk1c Triticum aesti...    50   2e-004
gb|CA713977.1|CA713977  wdk3c.pk020.d23 wdk3c Triticum aesti...    40   0.16 

>gb|CA705404.1|CA705404 wdk1c.pk014.k15 wdk1c Triticum aestivum cDNA clone wdk1c.pk014.k15
           5' end, mRNA sequence
          Length = 415

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 336 tgctgctccaccctgcgtgcgcaggaggcatgcttgtgcgtgtacgccaaagacccc 392
           |||||| ||| |||||| ||||||||||| ||||| |||  ||||||||| ||||||
Sbjct: 207 tgctgcgccaacctgcgcgcgcaggaggcgtgcttctgccagtacgccaaggacccc 263



>gb|CA713977.1|CA713977 wdk3c.pk020.d23 wdk3c Triticum aestivum cDNA clone wdk3c.pk020.d23
           5' end, mRNA sequence
          Length = 466

 Score = 40.1 bits (20), Expect = 0.16
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 336 tgctgctccaccctgcgtgcgcaggaggcatgcttgtgcgtgtacgccaaag 387
           |||||| ||| |||||| |||||| |||| ||||| |||  |||||||||||
Sbjct: 200 tgctgcgccaacctgcgcgcgcagcaggcgtgcttctgccagtacgccaaag 251



  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 158,840
Number of Sequences: 636343
Number of extensions: 158840
Number of successful extensions: 46701
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46699
Number of HSP's gapped (non-prelim): 2
length of query: 568
length of database: 367,240,239
effective HSP length: 19
effective length of query: 549
effective length of database: 355,149,722
effective search space: 194977197378
effective search space used: 194977197378
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)