BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE498386.1|BE498386 WHE0952_C04_E08ZS Wheat pre-anthesis... 343 2e-092
emb|AJ577380.1|TAE577380 Triticum aestivum partial mRNA for... 319 2e-085
gb|BJ252455.1|BJ252455 BJ252455 Y. Ogihara unpublished cDNA... 287 9e-076
gb|BJ258359.1|BJ258359 BJ258359 Y. Ogihara unpublished cDNA... 278 8e-073
gb|BF293967.1|BF293967 WHE2162_C03_F06ZS Triticum turgidum ... 272 5e-071
gb|BJ263952.1|BJ263952 BJ263952 Y. Ogihara unpublished cDNA... 254 1e-065
gb|BJ246521.1|BJ246521 BJ246521 Y. Ogihara unpublished cDNA... 232 4e-059
gb|CA593599.1|CA593599 wpa1c.pk002.n10 wpa1c Triticum aesti... 163 3e-038
gb|BJ254491.1|BJ254491 BJ254491 Y. Ogihara unpublished cDNA... 143 3e-032
gb|BQ903982.1|BQ903982 Ta03_21e08_R Ta03_AAFC_ECORC_Fusariu... 135 8e-030
gb|BI751763.1|BI751763 Ta01_12e06_R Ta01_AAFC_ECORC_Fusariu... 129 5e-028
gb|BJ257358.1|BJ257358 BJ257358 Y. Ogihara unpublished cDNA... 111 1e-022
gb|BJ262940.1|BJ262940 BJ262940 Y. Ogihara unpublished cDNA... 111 1e-022
gb|CK201104.1|CK201104 FGAS009623 Triticum aestivum FGAS: L... 107 2e-021
gb|BJ225843.1|BJ225843 BJ225843 Y. Ogihara unpublished cDNA... 80 4e-013
gb|BQ245274.1|BQ245274 TaE15027B12R TaE15 Triticum aestivum... 70 4e-010
gb|BJ230741.1|BJ230741 BJ230741 Y. Ogihara unpublished cDNA... 62 9e-008
gb|AL821741.1|AL821741 AL821741 N:130 Triticum aestivum cDN... 60 4e-007
gb|BJ226053.1|BJ226053 BJ226053 Y. Ogihara unpublished cDNA... 56 6e-006
gb|BJ260750.1|BJ260750 BJ260750 Y. Ogihara unpublished cDNA... 56 6e-006
gb|BQ838053.1|BQ838053 WHE2906_A08_A16ZS Wheat aluminum-str... 48 0.001
gb|BJ255233.1|BJ255233 BJ255233 Y. Ogihara unpublished cDNA... 46 0.006
gb|BJ322623.1|BJ322623 BJ322623 Y. Ogihara unpublished cDNA... 46 0.006
gb|CA640817.1|CA640817 wre1n.pk0020.f8 wre1n Triticum aesti... 46 0.006
gb|CK200779.1|CK200779 FGAS009296 Triticum aestivum FGAS: L... 46 0.006
gb|BE445335.1|BE445335 WHE1134_B12_C24ZS Wheat etiolated se... 44 0.022
gb|BJ230965.1|BJ230965 BJ230965 Y. Ogihara unpublished cDNA... 44 0.022
gb|BJ266439.1|BJ266439 BJ266439 Y. Ogihara unpublished cDNA... 44 0.022
gb|CD452852.1|CD452852 WHE1134_B12_C24ZT CS wheat etiolated... 44 0.022
gb|CD937950.1|CD937950 OV.108J10F010206 OV Triticum aestivu... 44 0.022
gb|CA597345.1|CA597345 wpa1c.pk016.e13 wpa1c Triticum aesti... 42 0.087
>gb|BE498386.1|BE498386 WHE0952_C04_E08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0952_C04_E08, mRNA sequence
Length = 526
Score = 343 bits (173), Expect = 2e-092
Identities = 347/405 (85%)
Strand = Plus / Plus
Query: 287 gcccccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaacccc 346
||||||| ||||||| ||||||| |||||||| ||| ||| | |||||||||||||||
Sbjct: 59 gcccccagcgtcatcaccgccgagcaccgcacctacattgagattgtcttcgagaacccc 118
Query: 347 gagaagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggc 406
|||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct: 119 gagaagagcatcgacaccttccacctcgacggctacgccttcttcgccgccggcatggga 178
Query: 407 ccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacggtgagccgg 466
||||| ||||||| | | | ||| || |||||||||||||||||||||||||||
Sbjct: 179 ccggggctatggacggtggagagcaggaagacatacaacctcctggacacggtgagccgg 238
Query: 467 cacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaacgcg 526
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 239 cacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgcc 298
Query: 527 ggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagcagctgtac 586
|| ||||||| | | ||||||| | ||||||||| | ||||| || ||||||||||||
Sbjct: 299 gggatgtggaacttgaggtccaatctgtgggagaggtactacctgggggagcagctgtac 358
Query: 587 gtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccggagactagc 646
|||||| || |||||||| |||||||||||||||||||||||||||| || | |
Sbjct: 359 gtgagctgcacctcgccggccaggtcgctcagggacgagtacaacatgcccgacaactcc 418
Query: 647 ctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctac 691
||||||||||||||||||||||| |||| |||||||| |||||
Sbjct: 419 ctccgctgcggcaaggtcgtcggcatgccgctgccgccgccctac 463
>emb|AJ577380.1|TAE577380 Triticum aestivum partial mRNA for putative L-ascorbate oxidase
homolog
Length = 506
Score = 319 bits (161), Expect = 2e-085
Identities = 344/405 (84%)
Strand = Plus / Plus
Query: 287 gcccccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaacccc 346
||||||| ||||||| ||| ||| |||||||| ||| ||| | ||||| |||||||||
Sbjct: 55 gcccccagcgtcatcaccgcggagcaccgcacctacattgagattgtctttgagaacccc 114
Query: 347 gagaagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggc 406
|||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||
Sbjct: 115 gagaagagcatcgacaccttccacctcaacggctacgccttcttcgccgccggcatggga 174
Query: 407 ccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacggtgagccgg 466
||||| ||||||| | | | ||| || |||||||||||||||||||||||||||
Sbjct: 175 ccggggctatggacggtggagagcaggaagacatacaacctcctggacacggtgagccgg 234
Query: 467 cacacgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaacgcg 526
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 235 cacacgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgcc 294
Query: 527 ggcatgtggagcatccggtccaacatctgggagaggcagtacctcggcgagcagctgtac 586
|| ||||||| | | ||||||| | ||||||||| | ||||| ||||||||||| |||
Sbjct: 295 gggatgtggaacttgaggtccaatctgtgggagaggtactacctgggcgagcagctatac 354
Query: 587 gtgagcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccggagactagc 646
|||||| || |||||||| |||||||||||||||||||||||||||| || | |
Sbjct: 355 gtgagctgcacctcgccggccaggtcgctcagggacgagtacaacatgcccgacaacgcc 414
Query: 647 ctccgctgcggcaaggtcgtcggactgccaatgccgccgtcctac 691
||||||||||||||||||||||| |||| |||||||| |||||
Sbjct: 415 ctccgctgcggcaaggtcgtcggcatgccgctgccgccgccctac 459
>gb|BJ252455.1|BJ252455 BJ252455 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24h01 3', mRNA sequence
Length = 732
Score = 287 bits (145), Expect = 9e-076
Identities = 292/341 (85%)
Strand = Plus / Minus
Query: 351 agagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggcccgg 410
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct: 732 agagcatcgacaccttccacctcgacggctacgccttcttcgccgccggcatgggaccgg 673
Query: 411 gcaaatggacgccagcgtcccggagcacgtacaacctcctggacacggtgagccggcaca 470
| ||||||| | | | ||| || |||||||||||||||||||||||||||||||
Sbjct: 672 ggctatggacggtggagagcaggaagacatacaacctcctggacacggtgagccggcaca 613
Query: 471 cgatccaggtgtaccctaggtcgtggacggcggtgatgatgacgttcgacaacgcgggca 530
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 612 cgatccaggtgtacccgaggtcgtggacggcggtgatgctgacgttcgacaacgccggga 553
Query: 531 tgtggagcatccggtccaacatctgggagaggcagtacctcggcgagcagctgtacgtga 590
|||||| | | ||||||| | ||||||||| | ||||| || ||||||||||||||||
Sbjct: 552 tgtggaacttgaggtccaatctgtgggagaggtactacctgggggagcagctgtacgtga 493
Query: 591 gcgtcatctcgccggagcggtcgctcagggacgagtacaacatgccggagactagcctcc 650
|| || |||||||| |||||||||||||||||||||||||||| || | |||||
Sbjct: 492 gctgcacctcgccggccaggtcgctcagggacgagtacaacatgcccgacaactccctcc 433
Query: 651 gctgcggcaaggtcgtcggactgccaatgccgccgtcctac 691
||||||||||||||||||| |||| |||||||| |||||
Sbjct: 432 gctgcggcaaggtcgtcggcatgccgctgccgccgccctac 392
>gb|BJ258359.1|BJ258359 BJ258359 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7d03 5', mRNA sequence
Length = 599
Score = 278 bits (140), Expect = 8e-073
Identities = 215/240 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 341 caaccagtggaggtccttccgctggaacctgacggccagcgccgccaggcccaacccgca 400
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct: 401 ggggtcctaccactacgggcagatcaacatcacccgcaccatcaagctctccagcagccg 460
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgtggacccgga 183
|||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||| ||
Sbjct: 461 cggcaaggtcgacggcaaggagaggtacgccctcaacggcgtgtcccacaccgaccctga 520
Query: 184 aacccccgtcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacct 243
|| ||| ||||||||||||||||||||||||||| | | || |||||| ||||||||||
Sbjct: 521 gacgcccctcaagctcgccgagtacttcaacgccaccaagggagtgttcgagtacaacct 580
>gb|BF293967.1|BF293967 WHE2162_C03_F06ZS Triticum turgidum L. var. durum (durum wheat)
whole plant cDNA library Triticum turgidum cDNA clone
WHE2162_C03_F06, mRNA sequence
Length = 442
Score = 272 bits (137), Expect = 5e-071
Identities = 215/241 (89%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 118 caaccagtggaggtccttccgctggaacctgacggccagcgccgccaggcccaacccgca 177
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 178 ggggtcctaccactacggccagatcaacatcacccgcaccatcaagctctcccccagccg 237
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtcgcacgtggacccgga 183
|||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||| ||
Sbjct: 238 cggcaaggtcgacggcaaggagaggtacgccctcaacggcgtgtcccacaccgaccccga 297
Query: 184 aacccccgtcaagctcgccgagtacttcaacgccagcgacggcgtgttcaagtacaacct 243
|| || ||||||||||||||||||||||||||| | | || |||||| ||||||||||
Sbjct: 298 gacgccgctcaagctcgccgagtacttcaacgccaccaagggagtgttcgagtacaacct 357
Query: 244 c 244
|
Sbjct: 358 c 358
>gb|BJ263952.1|BJ263952 BJ263952 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7d03 3', mRNA sequence
Length = 694
Score = 254 bits (128), Expect = 1e-065
Identities = 221/252 (87%)
Strand = Plus / Minus
Query: 440 tacaacctcctggacacggtgagccggcacacgatccaggtgtaccctaggtcgtggacg 499
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 641 tacaacctcctggacacggtgagccggcacacgatccaggtgtacccgaggtcgtggacg 582
Query: 500 gcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgggag 559
||||||||| |||||||||||||||| || ||||||| | | ||||||| | ||||||
Sbjct: 581 gcggtgatgctgacgttcgacaacgccgggatgtggaacttgaggtccaatctgtgggag 522
Query: 560 aggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctcagg 619
||| | ||||| || |||||||||||||||||| || |||||||| |||||||||||
Sbjct: 521 aggtactacctgggggagcagctgtacgtgagctgcacctcgccggccaggtcgctcagg 462
Query: 620 gacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgccaatg 679
||||||||||||||||| || | | |||||||||||||||||||||||| |||| ||
Sbjct: 461 gacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgccgctg 402
Query: 680 ccgccgtcctac 691
|||||| |||||
Sbjct: 401 ccgccgccctac 390
>gb|BJ246521.1|BJ246521 BJ246521 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf24h01 5', mRNA sequence
Length = 627
Score = 232 bits (117), Expect = 4e-059
Identities = 153/165 (92%)
Strand = Plus / Plus
Query: 4 caaccagtgcaggtccttccgctggaacctgacggccagcgcggcgcggcccaacccgca 63
||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 453 caaccagtggaggtccttccgctggaacctgacggccagcgccgccaggcccaacccgca 512
Query: 64 ggggtcgtaccactacggccagatcaacatcacccgcaccatcaagctcgccatgggccg 123
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 513 ggggtcctaccactacggccagatcaacatcacccgcaccatcaagctctcccccagccg 572
Query: 124 cggcaaggtcgacggcaaggagaggttcgccttcaacggcgtgtc 168
|||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 573 cggcaaggtcgacggcaaggagaggtacgccctcaacggcgtgtc 617
>gb|CA593599.1|CA593599 wpa1c.pk002.n10 wpa1c Triticum aestivum cDNA clone wpa1c.pk002.n10
5' end, mRNA sequence
Length = 545
Score = 163 bits (82), Expect = 3e-038
Identities = 185/218 (84%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 287 gcccccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaacccc 346
||||||| ||||||| ||| ||| |||||||| ||| ||| | ||||| |||||||||
Sbjct: 85 gcccccagcgtcatcaccgcggagcaccgcacctacattgagattgtctttgagaacccc 144
Query: 347 gagaagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggc 406
|||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||
Sbjct: 145 gagaagagcatcgacaccttccacctcaacggctacgccttcttcgccgccggcatggga 204
Query: 407 ccgggcaaatggacgccagcgtcccggagcacgtacaacctcctggacacggtgagccgg 466
||||| ||||||| | | | ||| || |||||||||||||||||||||||||||
Sbjct: 205 ccggggctatggacggtggagagcaggaagacatacaacctcctggacacggtgagccgg 264
Query: 467 cacacgatccaggtgtaccctaggtcgtggacggcggt 504
|||||||| || ||||| || |||||||||||||||||
Sbjct: 265 cacacgattcaagtgta-ccgaggtcgtggacggcggt 301
Score = 44.1 bits (22), Expect = 0.022
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 203 gagtacttcaacgccagcgacggcgtgttcaagtacaacctc 244
|||||||||||||||| | | || |||||| |||||||||||
Sbjct: 1 gagtacttcaacgccaccaagggagtgttcgagtacaacctc 42
>gb|BJ254491.1|BJ254491 BJ254491 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf5n08 3', mRNA sequence
Length = 592
Score = 143 bits (72), Expect = 3e-032
Identities = 162/192 (84%)
Strand = Plus / Minus
Query: 500 gcggtgatgatgacgttcgacaacgcgggcatgtggagcatccggtccaacatctgggag 559
||||||||| |||||||||||||||| || ||||||| | | ||||||| | ||||||
Sbjct: 592 gcggtgatgctgacgttcgacaacgccgggatgtggaacttgaggtccaatctgtgggag 533
Query: 560 aggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgctcagg 619
||| | ||||| || |||||||||||||||||| || |||||||| |||||||||||
Sbjct: 532 aggtactacctgggggagcagctgtacgtgagctgcacctcgccggccaggtcgctcagg 473
Query: 620 gacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgccaatg 679
||||||||||||||||| || | | |||||||||||||||||||||||| |||| ||
Sbjct: 472 gacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgccgctg 413
Query: 680 ccgccgtcctac 691
|||||| |||||
Sbjct: 412 ccgccgccctac 401
>gb|BQ903982.1|BQ903982 Ta03_21e08_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta03_21e08, mRNA
sequence
Length = 203
Score = 135 bits (68), Expect = 8e-030
Identities = 117/132 (88%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 290 cccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaaccccgag 349
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 150 cccaacgtcatcaccgccgagttccgcaccttcatcgaggtcgtcttcgagaaccccgag 91
Query: 350 aagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggcccg 409
|||||||| || |||| ||||||| | |||||||||||||||||||| ||||| |||
Sbjct: 90 aagagcatggagtccatgcacatcg-ggmgtacgccttcttcgccgtcgggatggggccg 32
Query: 410 ggcaaatggacg 421
|| || ||||||
Sbjct: 31 gggaagtggacg 20
>gb|BI751763.1|BI751763 Ta01_12e06_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_12e06, mRNA
sequence
Length = 246
Score = 129 bits (65), Expect = 5e-028
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 287 gcccccaacgtcatccgcgccgagttccgcaccttcatcgaggtggtcttcgagaacccc 346
||||||| ||||||| | ||||| |||||||| ||| ||| | ||||||||||| ||
Sbjct: 51 gcccccagcgtcatcaccaccgagcaccgcacctacattgagattktcttcgagaacscc 110
Query: 347 gagaagagcatcgacaccatccacatcgacggctacgccttcttcgccgtcggcatgggc 406
|||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct: 111 gagaagagcatcgacaccktccacctcgacggctacgccttcttcgccgccggcatggga 170
Query: 407 ccggg 411
|||||
Sbjct: 171 ccggg 175
Score = 77.8 bits (39), Expect = 2e-012
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 440 tacaacctcctggacacggtgagccggcacacgatccaggtgt 482
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 tacaacctcctggacacggtgagccggcacaccatccaggtgt 246
>gb|BJ257358.1|BJ257358 BJ257358 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh10b24 5', mRNA sequence
Length = 684
Score = 111 bits (56), Expect = 1e-022
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 556 ggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgct 615
||||||| | ||||| || |||||||||||||||||| || |||||||| |||||||
Sbjct: 239 ggagaggtactacctgggggagcagctgtacgtgagctgcacctcgccggccaggtcgct 298
Query: 616 cagggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcc 675
||||||||||||||||||||| || | | |||||||||||||||||||||||| ||||
Sbjct: 299 cagggacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgcc 358
Query: 676 aatgccgccgtcctac 691
|||||||| |||||
Sbjct: 359 gctgccgccgccctac 374
>gb|BJ262940.1|BJ262940 BJ262940 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh10b24 3', mRNA sequence
Length = 657
Score = 111 bits (56), Expect = 1e-022
Identities = 116/136 (85%)
Strand = Plus / Minus
Query: 556 ggagaggcagtacctcggcgagcagctgtacgtgagcgtcatctcgccggagcggtcgct 615
||||||| | ||||| || |||||||||||||||||| || |||||||| |||||||
Sbjct: 552 ggagaggtactacctgggggagcagctgtacgtgagctgcacctcgccggccaggtcgct 493
Query: 616 cagggacgagtacaacatgccggagactagcctccgctgcggcaaggtcgtcggactgcc 675
||||||||||||||||||||| || | | |||||||||||||||||||||||| ||||
Sbjct: 492 cagggacgagtacaacatgcccgacaattccctccgctgcggcaaggtcgtcggcatgcc 433
Query: 676 aatgccgccgtcctac 691
|||||||| |||||
Sbjct: 432 gctgccgccgccctac 417
>gb|CK201104.1|CK201104 FGAS009623 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 862
Score = 107 bits (54), Expect = 2e-021
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 17 tccttccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccac 76
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 420 tccttccggtggaacctgacggccagcgccgcgcggcccaacccgcaggggtcgttccac 479
Query: 77 tacggc 82
||||||
Sbjct: 480 tacggc 485
>gb|BJ225843.1|BJ225843 BJ225843 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl24b08 5', mRNA sequence
Length = 562
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 26 tggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccag 85
|||||||||||||| |||| | || |||||||||||||||| ||||||||||||||||||
Sbjct: 76 tggaacctgacggcgagcgggccgaggcccaacccgcagggctcgtaccactacggccag 135
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 409 cacatcgacggctacgccttct 430
>gb|BQ245274.1|BQ245274 TaE15027B12R TaE15 Triticum aestivum cDNA clone TaE15027B12R, mRNA
sequence
Length = 463
Score = 69.9 bits (35), Expect = 4e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacggccagat 87
|||||||||||| || | | ||||||| ||||||||||| ||||||||||||||| |||
Sbjct: 345 gaacctgacggcgagtgggccgcggccgaacccgcagggctcgtaccactacggctcgat 404
Query: 88 caacatcacccgcaccatc 106
|||| | | ||||||||||
Sbjct: 405 caacgtgagccgcaccatc 423
>gb|BJ230741.1|BJ230741 BJ230741 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl24b08 3', mRNA sequence
Length = 669
Score = 61.9 bits (31), Expect = 9e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 51 ggcccaacccgcaggggtcgtaccactacggccag 85
|||||||||||||||| ||||||||||||||||||
Sbjct: 666 ggcccaacccgcagggctcgtaccactacggccag 632
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 358 cacatcgacggctacgccttct 337
>gb|AL821741.1|AL821741 AL821741 N:130 Triticum aestivum cDNA clone A12_N130_plate_64, mRNA
sequence
Length = 554
Score = 60.0 bits (30), Expect = 4e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 28 gaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacgg 81
|||||||||||| |||| | ||||| | ||||||||||| ||||||||||||||
Sbjct: 326 gaacctgacggcgagcgggccgcggacgaacccgcagggctcgtaccactacgg 379
>gb|BJ226053.1|BJ226053 BJ226053 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl24o11 5', mRNA sequence
Length = 593
Score = 56.0 bits (28), Expect = 6e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 21 tccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacg 80
|||| |||||||||||||| |||| || |||| ||||| ||||| |||||||||||||
Sbjct: 335 tccggtggaacctgacggcgagcggaccgaggccgaaccctcagggctcgtaccactacg 394
Query: 81 gcca 84
||||
Sbjct: 395 gcca 398
>gb|BJ260750.1|BJ260750 BJ260750 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh26k22 5', mRNA sequence
Length = 643
Score = 56.0 bits (28), Expect = 6e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 21 tccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacg 80
|||| |||||||||||||| |||| || |||| ||||| ||||| |||||||||||||
Sbjct: 514 tccggtggaacctgacggcgagcggaccgaggccgaaccctcagggctcgtaccactacg 573
Query: 81 gcca 84
||||
Sbjct: 574 gcca 577
>gb|BQ838053.1|BQ838053 WHE2906_A08_A16ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2906_A08_A16, mRNA
sequence
Length = 756
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 21 tccgctggaacctgacggccagcgcggcgcggcccaacccgcaggggtcgtaccactacg 80
|||| |||||||||||||| || | || |||| ||||| ||||||||||||||||| |
Sbjct: 305 tccggtggaacctgacggcgagtggaccgaggccgaaccctcaggggtcgtaccactatg 364
Query: 81 gcca 84
||||
Sbjct: 365 gcca 368
>gb|BJ255233.1|BJ255233 BJ255233 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8o07 3', mRNA sequence
Length = 614
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 561 ggcagtacctcggcgagcagctgtacgtgag 591
|||||||||||||| ||||||||||| ||||
Sbjct: 263 ggcagtacctcggccagcagctgtacctgag 233
>gb|BJ322623.1|BJ322623 BJ322623 Y. Ogihara unpublished cDNA library, Wh_yf Triticum
aestivum cDNA clone whyf26e02 3', mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 561 ggcagtacctcggcgagcagctgtacgtgag 591
|||||||||||||| ||||||||||| ||||
Sbjct: 330 ggcagtacctcggccagcagctgtacctgag 300
>gb|CA640817.1|CA640817 wre1n.pk0020.f8 wre1n Triticum aestivum cDNA clone wre1n.pk0020.f8
5' end, mRNA sequence
Length = 431
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 561 ggcagtacctcggcgagcagctgtacgtgag 591
|||||||||||||| ||||||||||| ||||
Sbjct: 137 ggcagtacctcggccagcagctgtacctgag 167
>gb|CK200779.1|CK200779 FGAS009296 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 847
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 561 ggcagtacctcggcgagcagctgtacgtgag 591
|||||||||||||| ||||||||||| ||||
Sbjct: 573 ggcagtacctcggccagcagctgtacctgag 543
>gb|BE445335.1|BE445335 WHE1134_B12_C24ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1134_B12_C24,
mRNA sequence
Length = 508
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 400 cacatcgacggctacgccttct 421
>gb|BJ230965.1|BJ230965 BJ230965 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl24o11 3', mRNA sequence
Length = 558
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 483 cacatcgacggctacgccttct 462
>gb|BJ266439.1|BJ266439 BJ266439 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh26k22 3', mRNA sequence
Length = 680
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 543 cacatcgacggctacgccttct 522
>gb|CD452852.1|CD452852 WHE1134_B12_C24ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1134_B12_C24,
mRNA sequence
Length = 766
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 642 cacatcgacggctacgccttct 621
>gb|CD937950.1|CD937950 OV.108J10F010206 OV Triticum aestivum cDNA clone OV108J10, mRNA
sequence
Length = 316
Score = 44.1 bits (22), Expect = 0.022
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 368 cacatcgacggctacgccttct 389
||||||||||||||||||||||
Sbjct: 32 cacatcgacggctacgccttct 53
>gb|CA597345.1|CA597345 wpa1c.pk016.e13 wpa1c Triticum aestivum cDNA clone wpa1c.pk016.e13
5' end, mRNA sequence
Length = 533
Score = 42.1 bits (21), Expect = 0.087
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 616 cagggacgagtacaacatgcc 636
|||||||||||||||||||||
Sbjct: 482 cagggacgagtacaacatgcc 462
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 285,290
Number of Sequences: 636343
Number of extensions: 285290
Number of successful extensions: 82736
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82657
Number of HSP's gapped (non-prelim): 70
length of query: 1195
length of database: 367,240,239
effective HSP length: 20
effective length of query: 1175
effective length of database: 354,513,379
effective search space: 416553220325
effective search space used: 416553220325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)