BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276425.2.1
(753 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA605379.1|CA605379 wr1.pk0053.e2 wr1 Triticum aestivum ... 293 9e-078
gb|BE417540.1|BE417540 MUG022.A11R990620 ITEC MUG Wheat Spi... 278 5e-073
gb|BE415956.1|BE415956 MUG002.G09R990520 ITEC MUG Wheat Spi... 266 2e-069
gb|BQ839503.1|BQ839503 WHE4166_H04_P08ZS Wheat CS whole pla... 266 2e-069
gb|CK157787.1|CK157787 FGAS038954 Triticum aestivum FGAS: T... 194 6e-048
gb|CA691627.1|CA691627 wlm96.pk049.e5 wlm96 Triticum aestiv... 167 1e-039
gb|AL814284.1|AL814284 AL814284 e:512 Triticum aestivum cDN... 119 3e-025
gb|CA605241.1|CA605241 wr1.pk0051.f7 wr1 Triticum aestivum ... 92 7e-017
gb|BQ805546.1|BQ805546 WHE3568_C05_E10ZS Wheat developing g... 66 4e-009
gb|CA701680.1|CA701680 wkm2c.pk005.e23 wkm2c Triticum aesti... 50 2e-004
gb|DR735369.1|DR735369 FGAS081039 Triticum aestivum FGAS: L... 40 0.22
>gb|CA605379.1|CA605379 wr1.pk0053.e2 wr1 Triticum aestivum cDNA clone wr1.pk0053.e2 5'
end, mRNA sequence
Length = 584
Score = 293 bits (148), Expect = 9e-078
Identities = 274/316 (86%)
Strand = Plus / Plus
Query: 21 agcgcgagaaatggggtgataaggcttaccttgagaatgggtactacctccacggctact 80
|||| |||||||||||| | |||| || || |||||||| ||||||||||| ||||| |
Sbjct: 1 agcgtgagaaatggggtaacaaggtgtatctcgagaatggctactacctccatggctatt 60
Query: 81 gggggatcttggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcg 140
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 gggggatcttggtggacaggtacgaggagatgcttgagaattaccagccagggctcggcg 120
Query: 141 atcaccggtggccactcgtcacacactttgtcgggtgcaagccgtgtggcaaatttggag 200
|||| ||||||||||| ||||| |||||||||||||||||||| || ||| ||||| |
Sbjct: 121 atcatcggtggccactggtcactcactttgtcgggtgcaagccatgctccaagtttgggg 180
Query: 201 actaccctgtcgagcgatgcctcaagaatatggaccgtgcattcaattttggggataacc 260
| |||||||| ||||| ||||||||| | ||||||||||| |||||||| ||||||||||
Sbjct: 181 attaccctgttgagcggtgcctcaagcagatggaccgtgccttcaatttcggggataacc 240
Query: 261 agatcttgcagatgtatgggttcacacacaagtcactagcaagcaggagagtgaagagga 320
|| | ||||| ||||||||||| |||||||| || || |||||||| | |||||||
Sbjct: 241 aggtgttgcacatgtatgggtttgagcacaagtctcttgcgagcaggaggatcaagagga 300
Query: 321 tcaggaacgagaccag 336
||||||| ||||||||
Sbjct: 301 tcaggaatgagaccag 316
>gb|BE417540.1|BE417540 MUG022.A11R990620 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG022.A11, mRNA sequence
Length = 600
Score = 278 bits (140), Expect = 5e-073
Identities = 284/332 (85%)
Strand = Plus / Plus
Query: 1 ggtgtacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgg 60
|||||| |||||||| || ||||| |||||||||||| | |||| || || ||||||||
Sbjct: 269 ggtgtatatcctcgctacccagcgtgagaaatggggtaacaaggtgtatctcgagaatgg 328
Query: 61 gtactacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaa 120
||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 329 ctactacctccatggctattggggcatcttggtggacaggtacgaggagatgcttgagaa 388
Query: 121 ttacaagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaa 180
|||| |||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 389 ttaccagccggggctcggcgatcatcggtggccactggtcactcactttgtcgggtgcaa 448
Query: 181 gccgtgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgc 240
||| || ||| ||||| || |||||||| ||||| ||||||||| | |||||||| ||
Sbjct: 449 gccatgctccaagtttggggattaccctgttgagcggtgcctcaagcagatggaccgggc 508
Query: 241 attcaattttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagc 300
|||||||| |||||||||||| | ||||| ||||||||||| |||||||| || ||
Sbjct: 509 cttcaatttcggggataaccaggtgttgcacatgtatgggtttgagcacaagtctcttgc 568
Query: 301 aagcaggagagtgaagaggatcaggaacgaga 332
|||||||| | |||||||||||||| ||||
Sbjct: 569 gagcaggaggatcaagaggatcaggaatgaga 600
>gb|BE415956.1|BE415956 MUG002.G09R990520 ITEC MUG Wheat Spikelet Library Triticum aestivum
cDNA clone MUG002.G09, mRNA sequence
Length = 989
Score = 266 bits (134), Expect = 2e-069
Identities = 245/282 (86%)
Strand = Plus / Plus
Query: 1 ggtgtacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgg 60
|||||| |||||||| || ||||| |||||||||||| | |||| || || ||||||||
Sbjct: 269 ggtgtatatcctcgctacccagcgtgagaaatggggtaacaaggtgtatctcgagaatgg 328
Query: 61 gtactacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaa 120
||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 329 ctactacctccatggctattggggcatcttggtggacaggtacgaggagatgcttgagaa 388
Query: 121 ttacaagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaa 180
|||| |||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 389 ttaccagccggggctcggcgatcatcggtggccactggtcactcactttgtcgggtgcaa 448
Query: 181 gccgtgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgc 240
||| || ||| ||||| || |||||||| ||||| ||||||||| | |||||||| ||
Sbjct: 449 gccatgctccaagtttggggattaccctgttgagcggtgcctcaagcagatggaccgggc 508
Query: 241 attcaattttggggataaccagatcttgcagatgtatgggtt 282
|||||||| |||||||||||| | ||||| |||||||||||
Sbjct: 509 cttcaatttcggggataaccaggtgttgcacatgtatgggtt 550
>gb|BQ839503.1|BQ839503 WHE4166_H04_P08ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4166_H04_P08, mRNA sequence
Length = 552
Score = 266 bits (134), Expect = 2e-069
Identities = 299/354 (84%)
Strand = Plus / Minus
Query: 69 tccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaattacaagc 128
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 552 tccatggctattgggggatcttggtggacaggtacgaggagatgcttgagaattaccagc 493
Query: 129 cagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtgtg 188
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||
Sbjct: 492 cagggctcggcgatcatcggtggccactggtcactcactttgtcgggtgcaagccatgct 433
Query: 189 gcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattcaatt 248
||| ||||| || |||||||| ||||| ||||||||| | ||||||||||| |||||||
Sbjct: 432 ccaagtttggggattaccctgttgagcggtgcctcaagcagatggaccgtgccttcaatt 373
Query: 249 ttggggataaccagatcttgcagatgtatgggttcacacacaagtcactagcaagcagga 308
| |||||||||||| | ||||| ||||||||||| |||||||| || || |||||||
Sbjct: 372 tcggggataaccaggtgttgcacatgtatgggtttgagcacaagtctcttgcgagcagga 313
Query: 309 gagtgaagaggatcaggaacgagaccagcaacccacttgagacaaaggatgagcttgggt 368
| | |||||||||||||| ||| |||| |||| ||||| | |||||||| ||||
Sbjct: 312 ggatcaagaggatcaggaatgagcccagtgaccctcttgatatgaaggatgattacgggt 253
Query: 369 tgcttcatccagcattcaaggctgtgaagacttccacatgataattagagtaca 422
|||| || ||||| |||||||| | |||||| | ||||||||| || ||||||
Sbjct: 252 tgctccacccagcgttcaaggccctcaagactactacatgataactatagtaca 199
>gb|CK157787.1|CK157787 FGAS038954 Triticum aestivum FGAS: TaLt4 Triticum aestivum cDNA,
mRNA sequence
Length = 847
Score = 194 bits (98), Expect = 6e-048
Identities = 286/345 (82%), Gaps = 4/345 (1%)
Strand = Plus / Minus
Query: 80 tgggggatcttggtcg-acagg-tacgaggagatgcttgagaattacaagccagggctcg 137
|||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||
Sbjct: 674 tgggggatcttggtcggacagggtacgaggagatgtttgagaattacccagcagggctcg 615
Query: 138 gcgatcaccggtggccactcgtcacacactttgtcgggtgcaagccgtgtggcaaatttg 197
||||||| | |||||||| ||||| | |||||||||||||||||| || ||| ||||
Sbjct: 614 gcgatcatc--tggccactggtcactcgctttgtcgggtgcaagccatgctccaagtttg 557
Query: 198 gagactaccctgtcgagcgatgcctcaagaatatggaccgtgcattcaattttggggata 257
| || |||||||| ||||| ||||||||| | ||||||||||| |||||||| |||||||
Sbjct: 556 gggattaccctgttgagcggtgcctcaagcagatggaccgtgccttcaatttcggggata 497
Query: 258 accagatcttgcagatgtatgggttcacacacaagtcactagcaagcaggagagtgaaga 317
||||| | ||||| ||||||||||| |||||||| || || |||||||| | ||||
Sbjct: 496 accaggtgttgcacatgtatgggtttgagcacaagtctcttgcgagcaggaggatcaaga 437
Query: 318 ggatcaggaacgagaccagcaacccacttgagacaaaggatgagcttgggttgcttcatc 377
|||||||||| |||||||| |||| ||||| | |||||||| |||||||| || |
Sbjct: 436 ggatcaggaatgagaccagtgaccctcttgatatgaaggatgattacgggttgctccacc 377
Query: 378 cagcattcaaggctgtgaagacttccacatgataattagagtaca 422
|||| |||||||| | |||||||| ||||||||| || ||||||
Sbjct: 376 cagcgttcaaggccctcaagacttctacatgataactatagtaca 332
>gb|CA691627.1|CA691627 wlm96.pk049.e5 wlm96 Triticum aestivum cDNA clone wlm96.pk049.e5 5'
end, mRNA sequence
Length = 494
Score = 167 bits (84), Expect = 1e-039
Identities = 197/237 (83%)
Strand = Plus / Plus
Query: 1 ggtgtacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgg 60
|||||| |||||| | || || || |||||||||||| | || | || || ||||||||
Sbjct: 115 ggtgtatatcctcnctacccaccgtgagaaatggggtaacaangtgtatctcgagaatgg 174
Query: 61 gtactacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaa 120
||||||||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| ||
Sbjct: 175 ctactacctccatggctattggggcatcttggtggncaggtacgangagatgcttganaa 234
Query: 121 ttacaagccagggctcggcgatcaccggtggccactcgtcacacactttgtcgggtgcaa 180
|||| | || |||||||||||||| |||||| |||| ||||| |||||||||||||||||
Sbjct: 235 ttaccaaccggggctcggcgatcatcggtggncactggtcactcactttgtcgggtgcaa 294
Query: 181 gccgtgtggcaaatttggagactaccctgtcgagcgatgcctcaagaatatggaccg 237
||| || ||| ||||| || |||||||| ||||| |||||||| | ||||||||
Sbjct: 295 gccatgctccaagtttggggattaccctgttgagcggtgcctcaancaaatggaccg 351
>gb|AL814284.1|AL814284 AL814284 e:512 Triticum aestivum cDNA clone D08_e512_plate_7, mRNA
sequence
Length = 603
Score = 119 bits (60), Expect = 3e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 1 ggtgtacatcctcgcgacacagcgcgagaaatggggtgataaggcttaccttgagaatgg 60
|||||| |||||||| || ||||| |||||||||||| | |||| || || ||||||||
Sbjct: 480 ggtgtatatcctcgctacccagcgtgagaaatggggtaacaaggtgtatctcgagaatgg 539
Query: 61 gtactacctccacggctactgggggatcttggtcgacaggtacgaggagatgcttgagaa 120
||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||||
Sbjct: 540 ctactacctccatggctattggggcatcttggtggaccggtacgaggagatgcttgagaa 599
Query: 121 ttac 124
||||
Sbjct: 600 ttac 603
>gb|CA605241.1|CA605241 wr1.pk0051.f7 wr1 Triticum aestivum cDNA clone wr1.pk0051.f7 5'
end, mRNA sequence
Length = 396
Score = 91.7 bits (46), Expect = 7e-017
Identities = 167/206 (81%), Gaps = 1/206 (0%)
Strand = Plus / Plus
Query: 218 tgcctcaagaatatggaccgtgcattcaattttggggataaccagatcttgcagatgtat 277
||||||||| | ||||||||||| |||||||| |||||||||||| | ||||| ||||||
Sbjct: 2 tgcctcaagcagatggaccgtgccttcaatttcggggataaccaggtgttgcacatgtat 61
Query: 278 gggttcacacacaagtcactagcaagcaggagagtgaagaggatcaggaacgagaccagc 337
|| || |||||||| || || |||||||| | |||||||||||||| ||||||||
Sbjct: 62 ggttttgagcacaagtctcttgcgagcaggaggatcaagaggatcaggaatgagaccagt 121
Query: 338 aacccacttgagacaaaggatgagcttgggttgcttcatccagcattcaaggctgt-gaa 396
|||| ||||| | |||||||| |||||||| || ||||| |||||||| || ||
Sbjct: 122 gaccctcttgatatgaaggatgattacgggttgctccacccagcgttcaaggccgtcaaa 181
Query: 397 gacttccacatgataattagagtaca 422
|||| | ||||||||| || ||||||
Sbjct: 182 gactactacatgataactatagtaca 207
>gb|BQ805546.1|BQ805546 WHE3568_C05_E10ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3568_C05_E10, mRNA sequence
Length = 721
Score = 65.9 bits (33), Expect = 4e-009
Identities = 138/173 (79%)
Strand = Plus / Plus
Query: 90 tggtcgacaggtacgaggagatgcttgagaattacaagccagggctcggcgatcaccggt 149
|||| |||| ||||||||||||| | ||||| || | |||||||| || ||| | ||||
Sbjct: 141 tggtggacaagtacgaggagatgatggagaaccaccatccagggcttggggatgagcggt 200
Query: 150 ggccactcgtcacacactttgtcgggtgcaagccgtgtggcaaatttggagactaccctg 209
||||| | || ||||||||||| ||||||||||| || || | | ||| || ||||| |
Sbjct: 201 ggccatttgtgacacactttgttgggtgcaagccatgcggaagctatggtgattacccag 260
Query: 210 tcgagcgatgcctcaagaatatggaccgtgcattcaattttggggataaccag 262
| || || || ||||||| |||||| || ||||| ||||||| |||||||||
Sbjct: 261 tagaccggtgtctcaagagtatggagcgagcatttaattttgccgataaccag 313
>gb|CA701680.1|CA701680 wkm2c.pk005.e23 wkm2c Triticum aestivum cDNA clone wkm2c.pk005.e23
5' end, mRNA sequence
Length = 562
Score = 50.1 bits (25), Expect = 2e-004
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 128 ccagggctcggcgatcaccggtggccactcgtcacacactttgt-cgggtgcaagcc 183
|||||||| || ||| | ||||||||| |||| ||||||||||| ||||||||||||
Sbjct: 400 ccagggcttggggatgagcggtggccaatcgtgacacactttgtccgggtgcaagcc 456
>gb|DR735369.1|DR735369 FGAS081039 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 1169
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 cggctactgggggatcttgg 92
||||||||||||||||||||
Sbjct: 964 cggctactgggggatcttgg 983
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,231
Number of Sequences: 636343
Number of extensions: 114231
Number of successful extensions: 30467
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30439
Number of HSP's gapped (non-prelim): 19
length of query: 753
length of database: 367,240,239
effective HSP length: 19
effective length of query: 734
effective length of database: 355,149,722
effective search space: 260679895948
effective search space used: 260679895948
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)