BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.2
(764 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA485859.1|CA485859 WHE4324_A04_B08ZS Wheat meiotic anth... 668 0.0
gb|CD899830.1|CD899830 G174.113L05R011120 G174 Triticum aes... 319 2e-085
gb|CD930959.1|CD930959 GR45.113A07F010418 GR45 Triticum aes... 226 2e-057
gb|CD921902.1|CD921902 G750.100G09F010423 G750 Triticum aes... 182 2e-044
gb|CD899829.1|CD899829 G174.113L05F010827 G174 Triticum aes... 100 3e-019
gb|BQ801609.1|BQ801609 WHE2816_D10_H20ZS Triticum monococcu... 60 2e-007
gb|BE404670.1|BE404670 WHE0447_A02_B03ZS Wheat etiolated se... 42 0.055
gb|CA497096.1|CA497096 WHE3223_A09_B17ZT Wheat meiotic anth... 42 0.055
gb|CD935236.1|CD935236 OV.101B12F010201 OV Triticum aestivu... 42 0.055
gb|CA500973.1|CA500973 WHE3203_F03_L05ZT Wheat meiotic anth... 40 0.22
>gb|CA485859.1|CA485859 WHE4324_A04_B08ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4324_A04_B08, mRNA sequence
Length = 688
Score = 668 bits (337), Expect = 0.0
Identities = 389/407 (95%)
Strand = Plus / Plus
Query: 162 tcagaaggctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctac 221
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1 tcagaaggctggttgaaaactggtgacctatgctacttcaatgaggatgggtttctctac 60
Query: 222 attgttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaa 281
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 61 attgttgatcggttgaaagagttgataaaatacaagggatatcaggtacctccagccgaa 120
Query: 282 ctggagcatatcctgaattctcatcctgatatcatggacgcagcagttattccttatcca 341
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 121 ctggagcatatcctgaattctcatcctgatatcatggatgcagcagttattccgtaccca 180
Query: 342 gacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaacctt 401
|||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 gacgaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggctcaaacctt 240
Query: 402 accgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgt 461
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 241 accaagcaacaagtcatggatttcgtggctaaacaggtcgcaccgtacaagaaagtccgt 300
Query: 462 cgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggag 360
Query: 522 cttgtagagcangccgtgtccatgggtacctncaagctttgaagttt 568
||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct: 361 cttgtagagcaggccgtgtccatggttacctccaagctttgaagttt 407
>gb|CD899830.1|CD899830 G174.113L05R011120 G174 Triticum aestivum cDNA clone G174113L05,
mRNA sequence
Length = 692
Score = 319 bits (161), Expect = 2e-085
Identities = 384/455 (84%), Gaps = 3/455 (0%)
Strand = Plus / Minus
Query: 109 tcgtcatgaaaggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaag 168
|||||||||| |||||||| ||||||||| | || ||||||| ||||||| | |||||||
Sbjct: 666 tcgtcatgaa-ggttatgttggtgacgacaaagcaactgcag-aacagtg-actcagaag 610
Query: 169 gctggttgaaaaccggtgacctatgctacttcaacgaggatgggttactctacattgttg 228
||||| ||||||| ||||| || ||||||||||| || ||||| || |||||||||||||
Sbjct: 609 gctggctgaaaactggtgatctttgctacttcaatgaagatggatttctctacattgttg 550
Query: 229 atcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaactggagc 288
|||| ||||| ||||||||||||||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 549 atcgtttgaaggagttgataaagtacaaaggataccaggttcctccagctgaactggagc 490
Query: 289 atatcctgaattctcatcctgatatcatggacgcagcagttattccttatccagacgaag 348
|||| | | || ||||||| || || || ||||||||| |||||||| ||||
Sbjct: 489 atattttaacatcacatcctggaattgctgatgctgcagttattggatatccagatgaag 430
Query: 349 acgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagc 408
||||||||||||| ||||||||||||||||||||| ||||||| || |||||||| | ||
Sbjct: 429 acgccgggcaactgccaatggcttttatagtgaggcaaccaggttccaaccttactgggc 370
Query: 409 aacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtgg 468
||||||||||||| | |||||||||||| || || |||||||||||| | || ||||| |
Sbjct: 369 aacaagtcatggactacgtggctaaacatgttgcgccctacaagaaaatccgccgagtcg 310
Query: 469 cctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggagcttgtag 528
|||| || |||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 309 ccttcgtcaatgcaataaccaaatcacctgctggaaagatcttgcggcgggagcttgtgc 250
Query: 529 agcangccgtgtccatgggtacctncaagctttga 563
|||| ||| |||| |||||| ||| ||||||||||
Sbjct: 249 agcaggccctgtcgatgggtgcctccaagctttga 215
>gb|CD930959.1|CD930959 GR45.113A07F010418 GR45 Triticum aestivum cDNA clone GR45113A07,
mRNA sequence
Length = 578
Score = 226 bits (114), Expect = 2e-057
Identities = 271/324 (83%)
Strand = Plus / Plus
Query: 240 gagttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaat 299
||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| || |
Sbjct: 3 gagttgataaagtacaaaggataccaggtgcctccagctgaactggagcatattctaaca 62
Query: 300 tctcatcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggcaa 359
|| ||||||| || || || |||||||| |||||||| ||||| || ||||||
Sbjct: 63 tcacatcctggaattgctgatgctgcagttatcggatatccagatgaagatgctgggcaa 122
Query: 360 ctcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatg 419
| ||||||||||||||||||||| ||||||| | ||||||||| | |||||||||||
Sbjct: 123 gtgccaatggcttttatagtgaggcaaccaggtttaaaccttactggccaacaagtcata 182
Query: 420 gatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttct 479
|||| |||||||||||| || || |||||||||||||| || ||||||||||| || |
Sbjct: 183 gattacgtggctaaacatgttgcgccctacaagaaagtccgccgagtggccttcgtagcg 242
Query: 480 gcaattcccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcangccgtg 539
||||| |||||||| ||||| |||||||||||||||||||||||||| |||| ||| ||
Sbjct: 243 gcaatacccaaatctcctgcggggaagatcttgcggcgggagcttgtgcagcaggccatg 302
Query: 540 tccatgggtacctncaagctttga 563
||||||||| ||| ||||||||||
Sbjct: 303 tccatgggtgcctccaagctttga 326
>gb|CD921902.1|CD921902 G750.100G09F010423 G750 Triticum aestivum cDNA clone G750100G09,
mRNA sequence
Length = 389
Score = 182 bits (92), Expect = 2e-044
Identities = 261/318 (82%)
Strand = Plus / Plus
Query: 243 ttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaattct 302
|||||||||||||| ||||| ||||| ||||| || ||||| |||||||| | | ||
Sbjct: 1 ttgataaagtacaaaggataccaggtgcctccagctgaactagagcatattttaacatca 60
Query: 303 catcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggcaactc 362
||||||| || || || ||||||||| |||||||| ||||| | ||||||||
Sbjct: 61 catcctggaattgctgatgctgcagttattggatatccagatgaagatgttgggcaactg 120
Query: 363 ccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatggat 422
||||||||||||||||||||| ||||||| || |||||||| | ||||||||||||||||
Sbjct: 121 ccaatggcttttatagtgaggcaaccaggttccaaccttactgggcaacaagtcatggat 180
Query: 423 ttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgca 482
| |||||||||||| || || |||||||||||| | || ||||| ||||| || ||||
Sbjct: 181 tacgtggctaaacatgttgcgccctacaagaaaatccgccgagtcgccttcgtcaatgca 240
Query: 483 attcccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcangccgtgtcc 542
|| ||||||| ||||| || ||||||||||||||||||||||| |||| ||| ||||
Sbjct: 241 ataaccaaatcacctgccggaaagatcttgcggcgggagcttgtgcagcaggccctgtcg 300
Query: 543 atgggtacctncaagctt 560
|||||| ||| |||||||
Sbjct: 301 atgggtgcctccaagctt 318
>gb|CD899829.1|CD899829 G174.113L05F010827 G174 Triticum aestivum cDNA clone G174113L05,
mRNA sequence
Length = 550
Score = 99.6 bits (50), Expect = 3e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 6 gtcgggaagctggcatcgcacttggaggcaaagatcgtcgatccctccaccggcgaggtg 65
||||| |||||||| ||||||||| |||| ||||| || ||||| ||||||||||||| |
Sbjct: 437 gtcggcaagctggcgtcgcacttgcaggcgaagatagtagatccgtccaccggcgaggcg 496
Query: 66 cttgggccaggg-cagcgcggcgagctctgggtccgaggaccagtcgtcatgaa 118
|| ||||| ||| ||||||||||||||||||||| | || ||| ||||||||||
Sbjct: 497 ctcgggccggggccagcgcggcgagctctgggtcaggggcccactcgtcatgaa 550
>gb|BQ801609.1|BQ801609 WHE2816_D10_H20ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2816_D10_H20, mRNA
sequence
Length = 350
Score = 60.0 bits (30), Expect = 2e-007
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 508 tcttgcggcgggagcttgtagagcangccgtgtccatgggtacctncaagctttga 563
||||||||||||||||||| |||| ||| |||| |||||| ||| ||||||||||
Sbjct: 19 tcttgcggcgggagcttgtgcagcaggccctgtcgatgggtgcctccaagctttga 74
>gb|BE404670.1|BE404670 WHE0447_A02_B03ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0447_A02_B03, mRNA
sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 497 tgctgggaagatcttgcggcg 517
|||||||||||||||||||||
Sbjct: 296 tgctgggaagatcttgcggcg 316
>gb|CA497096.1|CA497096 WHE3223_A09_B17ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3223_A09_B17, mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 497 tgctgggaagatcttgcggcg 517
|||||||||||||||||||||
Sbjct: 419 tgctgggaagatcttgcggcg 439
>gb|CD935236.1|CD935236 OV.101B12F010201 OV Triticum aestivum cDNA clone OV101B12, mRNA
sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 497 tgctgggaagatcttgcggcg 517
|||||||||||||||||||||
Sbjct: 250 tgctgggaagatcttgcggcg 270
>gb|CA500973.1|CA500973 WHE3203_F03_L05ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3203_F03_L05, mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.22
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 235 tgaaagagttgataaagtacaagggatatcaggtacctcc 274
||||||||||||| || ||||| || |||||||| |||||
Sbjct: 172 tgaaagagttgatcaaatacaaaggctatcaggtgcctcc 211
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,769
Number of Sequences: 636343
Number of extensions: 130769
Number of successful extensions: 38377
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38360
Number of HSP's gapped (non-prelim): 16
length of query: 764
length of database: 367,240,239
effective HSP length: 19
effective length of query: 745
effective length of database: 355,149,722
effective search space: 264586542890
effective search space used: 264586542890
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)