BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.1
(724 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA485859.1|CA485859 WHE4324_A04_B08ZS Wheat meiotic anth... 630 e-179
gb|CD899830.1|CD899830 G174.113L05R011120 G174 Triticum aes... 301 4e-080
gb|CD930959.1|CD930959 GR45.113A07F010418 GR45 Triticum aes... 238 4e-061
gb|CD921902.1|CD921902 G750.100G09F010423 G750 Triticum aes... 194 6e-048
gb|BQ801609.1|BQ801609 WHE2816_D10_H20ZS Triticum monococcu... 72 6e-011
gb|AL809196.1|AL809196 AL809196 a:11 Triticum aestivum cDNA... 44 0.013
gb|BE404670.1|BE404670 WHE0447_A02_B03ZS Wheat etiolated se... 42 0.052
gb|CA497096.1|CA497096 WHE3223_A09_B17ZT Wheat meiotic anth... 42 0.052
gb|CD935236.1|CD935236 OV.101B12F010201 OV Triticum aestivu... 42 0.052
gb|CA500973.1|CA500973 WHE3203_F03_L05ZT Wheat meiotic anth... 40 0.21
>gb|CA485859.1|CA485859 WHE4324_A04_B08ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4324_A04_B08, mRNA sequence
Length = 688
Score = 630 bits (318), Expect = e-179
Identities = 383/407 (94%)
Strand = Plus / Plus
Query: 132 tcagaaggctggttgaaaaccggtnnnnnnngctacttcaacgaggatgggttactctac 191
|||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||
Sbjct: 1 tcagaaggctggttgaaaactggtgacctatgctacttcaatgaggatgggtttctctac 60
Query: 192 attgttgatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaa 251
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 61 attgttgatcggttgaaagagttgataaaatacaagggatatcaggtacctccagccgaa 120
Query: 252 ctggagcatatcctgaattctcatcctgatatcatggacgcagcagttattccttatcca 311
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 121 ctggagcatatcctgaattctcatcctgatatcatggatgcagcagttattccgtaccca 180
Query: 312 gacgaagacgccgggcaactcccaatggcttttatagtgaggaaaccagggtcaaacctt 371
|||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 gacgaagatgtcgggcaactaccaatggcttttatagtgaggaaaccaggctcaaacctt 240
Query: 372 accgagcaacaagtcatggatttcgtggctaaacaggtcgcaccctacaagaaagttcgt 431
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 241 accaagcaacaagtcatggatttcgtggctaaacaggtcgcaccgtacaagaaagtccgt 300
Query: 432 cgagtggcctttgtttctgcaatccccaaatcgcctgctgggaagatcttgcggcgggag 491
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgagtggcctttgtttctgcaattcccaaatcgcctgctgggaagatcttgcggcgggag 360
Query: 492 cttgtagagcaggccgtgtccatgggtacctccaagctttgaagttt 538
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 361 cttgtagagcaggccgtgtccatggttacctccaagctttgaagttt 407
>gb|CD899830.1|CD899830 G174.113L05R011120 G174 Triticum aestivum cDNA clone G174113L05,
mRNA sequence
Length = 692
Score = 301 bits (152), Expect = 4e-080
Identities = 372/445 (83%), Gaps = 2/445 (0%)
Strand = Plus / Minus
Query: 89 aggttatgtcggtgacgacgaggctactgcagcaacagtggattcagaaggctggttgaa 148
||||||||| ||||||||| | || ||||||| ||||||| | |||||||||||| ||||
Sbjct: 657 aggttatgttggtgacgacaaagcaactgcag-aacagtg-actcagaaggctggctgaa 600
Query: 149 aaccggtnnnnnnngctacttcaacgaggatgggttactctacattgttgatcggttgaa 208
||| ||| |||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct: 599 aactggtgatctttgctacttcaatgaagatggatttctctacattgttgatcgtttgaa 540
Query: 209 agagttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaa 268
||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| | |
Sbjct: 539 ggagttgataaagtacaaaggataccaggttcctccagctgaactggagcatattttaac 480
Query: 269 ttctcatcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggca 328
|| ||||||| || || || ||||||||| |||||||| ||||||||||||||
Sbjct: 479 atcacatcctggaattgctgatgctgcagttattggatatccagatgaagacgccgggca 420
Query: 329 actcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcat 388
||| ||||||||||||||||||||| ||||||| || |||||||| | ||||||||||||
Sbjct: 419 actgccaatggcttttatagtgaggcaaccaggttccaaccttactgggcaacaagtcat 360
Query: 389 ggatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttc 448
||| | |||||||||||| || || |||||||||||| | || ||||| ||||| ||
Sbjct: 359 ggactacgtggctaaacatgttgcgccctacaagaaaatccgccgagtcgccttcgtcaa 300
Query: 449 tgcaatccccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgt 508
|||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 299 tgcaataaccaaatcacctgctggaaagatcttgcggcgggagcttgtgcagcaggccct 240
Query: 509 gtccatgggtacctccaagctttga 533
||| |||||| ||||||||||||||
Sbjct: 239 gtcgatgggtgcctccaagctttga 215
>gb|CD930959.1|CD930959 GR45.113A07F010418 GR45 Triticum aestivum cDNA clone GR45113A07,
mRNA sequence
Length = 578
Score = 238 bits (120), Expect = 4e-061
Identities = 273/324 (84%)
Strand = Plus / Plus
Query: 210 gagttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaat 269
||||||||||||||||| ||||| ||||| ||||| || |||||||||||||| || |
Sbjct: 3 gagttgataaagtacaaaggataccaggtgcctccagctgaactggagcatattctaaca 62
Query: 270 tctcatcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggcaa 329
|| ||||||| || || || |||||||| |||||||| ||||| || ||||||
Sbjct: 63 tcacatcctggaattgctgatgctgcagttatcggatatccagatgaagatgctgggcaa 122
Query: 330 ctcccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatg 389
| ||||||||||||||||||||| ||||||| | ||||||||| | |||||||||||
Sbjct: 123 gtgccaatggcttttatagtgaggcaaccaggtttaaaccttactggccaacaagtcata 182
Query: 390 gatttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttct 449
|||| |||||||||||| || || |||||||||||||| || ||||||||||| || |
Sbjct: 183 gattacgtggctaaacatgttgcgccctacaagaaagtccgccgagtggccttcgtagcg 242
Query: 450 gcaatccccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtg 509
||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct: 243 gcaatacccaaatctcctgcggggaagatcttgcggcgggagcttgtgcagcaggccatg 302
Query: 510 tccatgggtacctccaagctttga 533
||||||||| ||||||||||||||
Sbjct: 303 tccatgggtgcctccaagctttga 326
>gb|CD921902.1|CD921902 G750.100G09F010423 G750 Triticum aestivum cDNA clone G750100G09,
mRNA sequence
Length = 389
Score = 194 bits (98), Expect = 6e-048
Identities = 263/318 (82%)
Strand = Plus / Plus
Query: 213 ttgataaagtacaagggatatcaggtacctcctgccgaactggagcatatcctgaattct 272
|||||||||||||| ||||| ||||| ||||| || ||||| |||||||| | | ||
Sbjct: 1 ttgataaagtacaaaggataccaggtgcctccagctgaactagagcatattttaacatca 60
Query: 273 catcctgatatcatggacgcagcagttattccttatccagacgaagacgccgggcaactc 332
||||||| || || || ||||||||| |||||||| ||||| | ||||||||
Sbjct: 61 catcctggaattgctgatgctgcagttattggatatccagatgaagatgttgggcaactg 120
Query: 333 ccaatggcttttatagtgaggaaaccagggtcaaaccttaccgagcaacaagtcatggat 392
||||||||||||||||||||| ||||||| || |||||||| | ||||||||||||||||
Sbjct: 121 ccaatggcttttatagtgaggcaaccaggttccaaccttactgggcaacaagtcatggat 180
Query: 393 ttcgtggctaaacaggtcgcaccctacaagaaagttcgtcgagtggcctttgtttctgca 452
| |||||||||||| || || |||||||||||| | || ||||| ||||| || ||||
Sbjct: 181 tacgtggctaaacatgttgcgccctacaagaaaatccgccgagtcgccttcgtcaatgca 240
Query: 453 atccccaaatcgcctgctgggaagatcttgcggcgggagcttgtagagcaggccgtgtcc 512
|| ||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 241 ataaccaaatcacctgccggaaagatcttgcggcgggagcttgtgcagcaggccctgtcg 300
Query: 513 atgggtacctccaagctt 530
|||||| |||||||||||
Sbjct: 301 atgggtgcctccaagctt 318
>gb|BQ801609.1|BQ801609 WHE2816_D10_H20ZS Triticum monococcum vernalized apex cDNA library
Triticum monococcum cDNA clone WHE2816_D10_H20, mRNA
sequence
Length = 350
Score = 71.9 bits (36), Expect = 6e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 478 tcttgcggcgggagcttgtagagcaggccgtgtccatgggtacctccaagctttga 533
||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 19 tcttgcggcgggagcttgtgcagcaggccctgtcgatgggtgcctccaagctttga 74
>gb|AL809196.1|AL809196 AL809196 a:11 Triticum aestivum cDNA clone A05_a11_plate_14, mRNA
sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 453 atccccaaatcgcctgctgggaagatcttg 482
|||||||||||||| || ||||||||||||
Sbjct: 413 atccccaaatcgccggccgggaagatcttg 442
>gb|BE404670.1|BE404670 WHE0447_A02_B03ZS Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0447_A02_B03, mRNA
sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 467 tgctgggaagatcttgcggcg 487
|||||||||||||||||||||
Sbjct: 296 tgctgggaagatcttgcggcg 316
>gb|CA497096.1|CA497096 WHE3223_A09_B17ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3223_A09_B17, mRNA sequence
Length = 628
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 467 tgctgggaagatcttgcggcg 487
|||||||||||||||||||||
Sbjct: 419 tgctgggaagatcttgcggcg 439
>gb|CD935236.1|CD935236 OV.101B12F010201 OV Triticum aestivum cDNA clone OV101B12, mRNA
sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 467 tgctgggaagatcttgcggcg 487
|||||||||||||||||||||
Sbjct: 250 tgctgggaagatcttgcggcg 270
>gb|CA500973.1|CA500973 WHE3203_F03_L05ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE3203_F03_L05, mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.21
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 205 tgaaagagttgataaagtacaagggatatcaggtacctcc 244
||||||||||||| || ||||| || |||||||| |||||
Sbjct: 172 tgaaagagttgatcaaatacaaaggctatcaggtgcctcc 211
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,863
Number of Sequences: 636343
Number of extensions: 117863
Number of successful extensions: 34007
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33990
Number of HSP's gapped (non-prelim): 15
length of query: 724
length of database: 367,240,239
effective HSP length: 19
effective length of query: 705
effective length of database: 355,149,722
effective search space: 250380554010
effective search space used: 250380554010
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)