BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adap... 375 e-102
gb|BZ629794.1|BZ629794 ih68e02.g1 WGS-SbicolorF (DH5a methy... 307 7e-082
gb|CW167616.1|CW167616 104_576_11153698_116_36487_033 Sorgh... 307 7e-082
gb|CW246390.1|CW246390 104_707_11221324_116_35085_012 Sorgh... 307 7e-082
gb|CW433408.1|CW433408 fsbb001f148j18k0 Sorghum methylation... 307 7e-082
gb|CW167617.1|CW167617 104_576_11153698_148_36488_033 Sorgh... 113 2e-023
gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Me... 56 4e-006
gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Me... 56 4e-006
gb|BI211291.1|BI211291 IP1_58_G11.b1_A002 Immature pannicle... 56 4e-006
gb|CW270039.1|CW270039 104_741_11402185_116_35324_007 Sorgh... 52 6e-005
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 42 0.060
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 42 0.060
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.060
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 42 0.060
gb|CW154630.1|CW154630 104_556_11145702_116_36351_017 Sorgh... 40 0.24
gb|CW187057.1|CW187057 104_605_11166892_148_36719_012 Sorgh... 40 0.24
gb|CW241828.1|CW241828 104_701_11218990_148_37557_093 Sorgh... 40 0.24
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.24
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.24
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.24
>gb|BZ343273.1|BZ343273 ho53a08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho53a08 5', DNA sequence
Length = 604
Score = 375 bits (189), Expect = e-102
Identities = 197/200 (98%)
Strand = Plus / Plus
Query: 322 acctgaaggtttcgccaatgagaattcttccatcgcagtggatctaagtcgccaatgcct 381
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 acctgaaggtttcgccaatgagaattcttccaccgcagtggatctaagtcgccaatgcct 442
Query: 382 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtgatcgtgcccatgtatcttcttacccctgaatcctctgtctcaaagagcattctgaat 502
Query: 442 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cgcattccaagggacacttgtgtatacagagccttattgtattttgctaaagggatgaca 562
Query: 502 aattctgatgggcntgccct 521
||||| ||||||| ||||||
Sbjct: 563 aattccgatgggcttgccct 582
Score = 264 bits (133), Expect = 9e-069
Identities = 142/145 (97%)
Strand = Plus / Plus
Query: 185 ctggcattcctgcttgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 244
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 ctggcattcctggctgcttaggaagctttggcctgaaaaatggtggtgggcatatataaa 76
Query: 245 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atggtgtagcaactggttcaatctcccatatcgaaacacgggtgcgcctctcagatgcag 136
Query: 305 tcgattcatcccaaccaacctgaag 329
| |||||||||||||||||||||||
Sbjct: 137 ttgattcatcccaaccaacctgaag 161
>gb|BZ629794.1|BZ629794 ih68e02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih68e02 5', DNA sequence
Length = 487
Score = 307 bits (155), Expect = 7e-082
Identities = 167/171 (97%)
Strand = Plus / Minus
Query: 17 gtacagcaggggaagcagttgctagcatctgaggattttgctgcatagccatccattgaa 76
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtacagcaggggcagcagttgctagcatctgaggattttgctgcatagccatccattgaa 268
Query: 77 ctaggctcaggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaa 136
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 267 ctaggctcaggcctggaaataatgcattttggacatctttcagggcaaagtcatcagcaa 208
Query: 137 gccatggcatcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 207 gccatggcatcgctcttttgaaagcactctcaacctcgctttcatcatctg 157
>gb|CW167616.1|CW167616 104_576_11153698_116_36487_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153698, DNA
sequence
Length = 658
Score = 307 bits (155), Expect = 7e-082
Identities = 167/171 (97%)
Strand = Plus / Minus
Query: 17 gtacagcaggggaagcagttgctagcatctgaggattttgctgcatagccatccattgaa 76
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtacagcaggggcagcagttgctagcatctgaggattttgctgcatagccatccattgaa 419
Query: 77 ctaggctcaggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaa 136
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 418 ctaggctcaggcctggaaataatgcattttggacatctttcagggcaaagtcatcagcaa 359
Query: 137 gccatggcatcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 358 gccatggcatcgctcttttgaaagcactctcaacctcgctttcatcatctg 308
>gb|CW246390.1|CW246390 104_707_11221324_116_35085_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221324, DNA
sequence
Length = 703
Score = 307 bits (155), Expect = 7e-082
Identities = 167/171 (97%)
Strand = Plus / Minus
Query: 17 gtacagcaggggaagcagttgctagcatctgaggattttgctgcatagccatccattgaa 76
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtacagcaggggcagcagttgctagcatctgaggattttgctgcatagccatccattgaa 286
Query: 77 ctaggctcaggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaa 136
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 285 ctaggctcaggcctggaaataatgcattttggacatctttcagggcaaagtcatcagcaa 226
Query: 137 gccatggcatcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 225 gccatggcatcgctcttttgaaagcactctcaacctcgctttcatcatctg 175
>gb|CW433408.1|CW433408 fsbb001f148j18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148j18, DNA
sequence
Length = 748
Score = 307 bits (155), Expect = 7e-082
Identities = 167/171 (97%)
Strand = Plus / Minus
Query: 17 gtacagcaggggaagcagttgctagcatctgaggattttgctgcatagccatccattgaa 76
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gtacagcaggggcagcagttgctagcatctgaggattttgctgcatagccatccattgaa 158
Query: 77 ctaggctcaggcctggaaataatgcattttggacatctttcagagcgaagtcatcagcaa 136
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 157 ctaggctcaggcctggaaataatgcattttggacatctttcagggcaaagtcatcagcaa 98
Query: 137 gccatggcatcgctcttttgaaagcactctcaacctcgttttcatcatctg 187
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 97 gccatggcatcgctcttttgaaagcactctcaacctcgctttcatcatctg 47
>gb|CW167617.1|CW167617 104_576_11153698_148_36488_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153698, DNA
sequence
Length = 737
Score = 113 bits (57), Expect = 2e-023
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 17 gtacagcaggggaagcagttgctagcatctgaggattttgctgcatagccatccattgaa 76
|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct: 665 gtacagcaggggcagcagttgctagcatctgaagaatttgctgcatagccatccattgga 724
Query: 77 ctaggctcaggcc 89
|||||||||||||
Sbjct: 725 ctaggctcaggcc 737
>gb|BF588107.1|BF588107 FM1_37_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 56.0 bits (28), Expect = 4e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 496 atgacaaattctgatgggcntgcccttggattatagaaaatagtaaa 542
||||||||||| | |||| ||| |||||||||||||||||||||||
Sbjct: 226 atgacaaattcacaagggcttgctcttggattatagaaaatagtaaa 180
>gb|BF704862.1|BF704862 FM1_52_D11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 512
Score = 56.0 bits (28), Expect = 4e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 496 atgacaaattctgatgggcntgcccttggattatagaaaatagtaaa 542
||||||||||| | |||| ||| |||||||||||||||||||||||
Sbjct: 226 atgacaaattcacaagggcttgctcttggattatagaaaatagtaaa 180
>gb|BI211291.1|BI211291 IP1_58_G11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 153
Score = 56.0 bits (28), Expect = 4e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 496 atgacaaattctgatgggcntgcccttggattatagaaaatagtaaa 542
||||||||||| | |||| ||| |||||||||||||||||||||||
Sbjct: 80 atgacaaattcacaagggcttgctcttggattatagaaaatagtaaa 34
>gb|CW270039.1|CW270039 104_741_11402185_116_35324_007 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11402185, DNA sequence
Length = 692
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 17 gtacagcaggggaagcagttgctagcatct 46
|||||||||||| |||||||||||||||||
Sbjct: 30 gtacagcaggggcagcagttgctagcatct 1
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtaca 224
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtac 192
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtaca 52
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtaca 64
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 42.1 bits (21), Expect = 0.060
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtaca 1
>gb|CW154630.1|CW154630 104_556_11145702_116_36351_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145702, DNA
sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 307 gattcatcccaaccaacctg 326
||||||||||||||||||||
Sbjct: 617 gattcatcccaaccaacctg 636
>gb|CW187057.1|CW187057 104_605_11166892_148_36719_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166892, DNA
sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 307 gattcatcccaaccaacctg 326
||||||||||||||||||||
Sbjct: 516 gattcatcccaaccaacctg 535
>gb|CW241828.1|CW241828 104_701_11218990_148_37557_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218990, DNA
sequence
Length = 722
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 307 gattcatcccaaccaacctg 326
||||||||||||||||||||
Sbjct: 338 gattcatcccaaccaacctg 357
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 2 gcggccgcccgggcaggtac 21
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtac 100
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,228
Number of Sequences: 832831
Number of extensions: 146228
Number of successful extensions: 37887
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37856
Number of HSP's gapped (non-prelim): 31
length of query: 626
length of database: 491,359,669
effective HSP length: 19
effective length of query: 607
effective length of database: 475,535,880
effective search space: 288650279160
effective search space used: 288650279160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)