BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD212848.1|CD212848 HS1_16_B05.g1_A012 Heat-shocked seed... 801 0.0
gb|BG411201.1|BG411201 EM1_26_H05.b1_A002 Embryo 1 (EM1) So... 789 0.0
gb|CL184322.1|CL184322 104_397_10898775_116_32364_056 Sorgh... 109 3e-022
gb|CW435809.1|CW435809 fsbb001f152c06f0 Sorghum methylation... 109 3e-022
gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassino... 109 3e-022
gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle... 96 5e-018
gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle... 86 5e-015
gb|BE598152.1|BE598152 PI1_66_C12.b1_A002 Pathogen induced ... 68 1e-009
gb|AW671713.1|AW671713 LG1_351_F01.b1_A002 Light Grown 1 (L... 44 0.017
gb|BE596273.1|BE596273 PI1_51_F11.b1_A002 Pathogen induced ... 44 0.017
>gb|CD212848.1|CD212848 HS1_16_B05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_16_B05_A012 5', mRNA sequence
Length = 632
Score = 801 bits (404), Expect = 0.0
Identities = 477/505 (94%)
Strand = Plus / Plus
Query: 154 gacagtgaggaaggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 10 gacagtgaggaaggaaatgaagatggctcaggttcaccggatccacctatttgggctgat 69
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 70 ataatgcggttcttctcaaacccccgtaagcccatgattcttgctcttgctcgtccggac 129
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 189
Query: 334 ttagcaaatcttacactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcaca 393
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 190 ttagcaaatcttacactgatcatgggcaatcgtgatgtcattgatgaaatgtcaagcaca 249
Query: 394 aatgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaa 453
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 250 aatgcagctgttttgacttcagtactcaagttaattgataaatacgatctatatggacaa 309
Query: 454 gtggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcg 513
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 310 gtggcataccccaagcaccacaagcatgttgaagttcctgatatttatcgtttagctgca 369
Query: 514 agaacaaaaggagtttttatcaattgtgcattggttgaaccatttggactcaccttgatt 573
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 370 agaacaaaaggagtttttatcaattgtgcattcattgaaccatttggactcaccttgatt 429
Query: 574 gaggntnnngcatatggtctacccatgnnnnncacccgaaatggtgggcctgtnnacata 633
|||| | || ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 430 gaggctgctgcttatggtctacccatggttgccacccgaaatggtgggcctgtggacata 489
Query: 634 catcgggttcttgataatggaattc 658
|||||||||||||||||||||||||
Sbjct: 490 catcgggttcttgataatggaattc 514
>gb|BG411201.1|BG411201 EM1_26_H05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 789 bits (398), Expect = 0.0
Identities = 470/497 (94%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 16 atgatggttttgatctaactatggctcggaaactcagagcaagaataaaacgtggtgtga 75
Query: 68 gctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggagtttagtc 127
|||||||||||||| | | |||||||||||| ||||||||||||||||||||||
Sbjct: 76 gctgctttggtcgttacatgccccgtatgattgcaatacctcctggcatggagtttagtc 135
Query: 128 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 187
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct: 136 atatagcaccacatgatgttgatcaggacagtgaggaaggaaatgaagatggctcaggtt 195
Query: 188 caccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaa 247
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 196 caccggatccacctatttgggctgatataatgcggttcttctcaaacccccgtaagccca 255
Query: 248 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 307
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 256 tgattcttgctcttgctcgtccggacccgaagaagaatatcactactctagtcaaagcat 315
Query: 308 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 367
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 316 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatgggcaatcgtg 375
Query: 368 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 427
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 376 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagtactcaagttaa 435
Query: 428 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 487
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 436 ttgataaatacgatctatatggacaagtggcataccccaagcaccacaagcaatttgaag 495
Query: 488 ttcctgatatttatcgt 504
|||||||||||||||||
Sbjct: 496 ttcctgatatttatcgt 512
>gb|CL184322.1|CL184322 104_397_10898775_116_32364_056 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 619
Score = 109 bits (55), Expect = 3e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||||||||||||||| |||||||| || |||
Sbjct: 27 attgatgaatatgacttgtatggtcaagtggcataccccaagcatcataagcactcggaa 86
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||| ||||||||||||||||| ||||||||
Sbjct: 87 gttcctgacatttatcgtttagctgcaagaacaaa 121
>gb|CW435809.1|CW435809 fsbb001f152c06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152c06, DNA
sequence
Length = 703
Score = 109 bits (55), Expect = 3e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||||||||||||||| |||||||| || |||
Sbjct: 13 attgatgaatatgacttgtatggtcaagtggcataccccaagcatcataagcactcggaa 72
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||| ||||||||||||||||| ||||||||
Sbjct: 73 gttcctgacatttatcgtttagctgcaagaacaaa 107
>gb|CX615040.1|CX615040 GABR1_17_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_F12_A002 5', mRNA sequence
Length = 775
Score = 109 bits (55), Expect = 3e-022
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||||||||||||||| |||||||| || |||
Sbjct: 483 attgatgaatatgacttgtatggtcaagtggcataccccaagcatcataagcactcggaa 542
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||| ||||||||||||||||| ||||||||
Sbjct: 543 gttcctgacatttatcgtttagctgcaagaacaaa 577
Score = 85.7 bits (43), Expect = 5e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252
||||||||||||||| || | |||||||||||||| |||| || ||||||| ||||||
Sbjct: 249 gatccacctatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgatt 308
Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttggt 312
|| ||| ||||||| || |||| |||||||||| ||||| || || ||||||||||||
Sbjct: 309 ctagctgttgctcgcccttatcccgagaagaatattactacgcttgtaaaagcatttggt 368
Query: 313 gaa 315
|||
Sbjct: 369 gaa 371
>gb|BI140744.1|BI140744 IP1_38_B12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 606
Score = 95.6 bits (48), Expect = 5e-018
Identities = 85/96 (88%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataag-caatctga 485
|||||| ||||||| | ||||| |||||||||||||||||||| |||||| || || ||
Sbjct: 394 attgatgaatatgacttgtatggtcaagtggcataccccaagcatcataagncactcgga 453
Query: 486 agttcctgatatttatcgtttagctgcgagaacaaa 521
||||||||| ||||||||||||||||| ||||||||
Sbjct: 454 agttcctgacatttatcgtttagctgcaagaacaaa 489
Score = 85.7 bits (43), Expect = 5e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252
||||||||||||||| || | |||||||||||||| |||| || ||||||| ||||||
Sbjct: 160 gatccacctatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgatt 219
Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttggt 312
|| ||| ||||||| || |||| |||||||||| ||||| || || ||||||||||||
Sbjct: 220 ctagctgttgctcgcccttatcccgagaagaatattactacgcttgtaaaagcatttggt 279
Query: 313 gaa 315
|||
Sbjct: 280 gaa 282
>gb|BI140866.1|BI140866 IP1_40_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 608
Score = 85.7 bits (43), Expect = 5e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252
||||||||||||||| || | |||||||||||||| |||| || ||||||| ||||||
Sbjct: 160 gatccacctatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgatt 219
Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttggt 312
|| ||| ||||||| || |||| |||||||||| ||||| || || ||||||||||||
Sbjct: 220 ctagctgttgctcgcccttatcccgagaagaatattactacgcttgtaaaagcatttggt 279
Query: 313 gaa 315
|||
Sbjct: 280 gaa 282
Score = 79.8 bits (40), Expect = 3e-013
Identities = 83/96 (86%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaa-tctga 485
|||||| ||||||| | ||||| |||||||||||||||||||| |||| | | || ||
Sbjct: 394 attgatgaatatgacttgtatggtcaagtggcataccccaagcatcatagcccactcgga 453
Query: 486 agttcctgatatttatcgtttagctgcgagaacaaa 521
||||||||| ||||||||||||||||| ||||||||
Sbjct: 454 agttcctgacatttatcgtttagctgcaagaacaaa 489
>gb|BE598152.1|BE598152 PI1_66_C12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 517
Score = 67.9 bits (34), Expect = 1e-009
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 619 gggcctgtnnacatacatcgggttcttgataatggaattc 658
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 8 gggcctgtggacatacatcgggttcttgataatggaattc 47
>gb|AW671713.1|AW671713 LG1_351_F01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311
||||||||||| |||||||| || |||||||| |||||
Sbjct: 148 ccgaagaagaacatcactaccctcgtcaaagcgtttgg 185
>gb|BE596273.1|BE596273 PI1_51_F11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 44.1 bits (22), Expect = 0.017
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttgg 311
||||||||||| |||||||| || |||||||| |||||
Sbjct: 307 ccgaagaagaacatcactaccctcgtcaaagcgtttgg 344
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,945
Number of Sequences: 832831
Number of extensions: 157945
Number of successful extensions: 42397
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42378
Number of HSP's gapped (non-prelim): 17
length of query: 683
length of database: 491,359,669
effective HSP length: 19
effective length of query: 664
effective length of database: 475,535,880
effective search space: 315755824320
effective search space used: 315755824320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)