BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL35a05.yg.2.1
(567 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW116836.1|CW116836 104_492_11107335_116_34608_054 Sorgh... 206 2e-051
gb|CN126659.1|CN126659 RHOH1_18_A05.g1_A002 Acid- and alkal... 186 1e-045
gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propi... 44 0.014
>gb|CW116836.1|CW116836 104_492_11107335_116_34608_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107335, DNA
sequence
Length = 573
Score = 206 bits (104), Expect = 2e-051
Identities = 148/166 (89%)
Strand = Plus / Plus
Query: 272 ggtatcctccccgaaaactattacaggatcatcaatgtaggaagtgttcaacaaagtagt 331
|||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 1 ggtatcctccccgaaagctgttacaggatcatcaatgtaagaagtgttcaacaaagtggt 60
Query: 332 gaatttagatagtgccacaacaagatcattcagaacatcatcaagatgatagnnnnnngc 391
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 61 gaatttagatagtgccacaacaagatcattgagaacatcatcaagatgatagaatgcagc 120
Query: 392 cagtttcgccaccgatagnnnaccatcaatgcatcctgtaagnacc 437
|||||| |||||||| || |||||||||||||||||||| |||
Sbjct: 121 cagttttgccaccgacaggaagccatcaatgcatcctgtaagaacc 166
>gb|CN126659.1|CN126659 RHOH1_18_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_A05_A002 5', mRNA sequence
Length = 131
Score = 186 bits (94), Expect = 1e-045
Identities = 122/130 (93%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 189 attatgttcctccatccactgcgtatgtgatcaccataagcagttgctatagtgaaaaca 248
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 131 attatgttcctccatccgctgcgtatatgatcaccataagcagttgctatagtgaaaaca 72
Query: 249 gcttctgttgccatcctagctttggtatcctccccgaaaactattacaggatcatcaatg 308
|||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||
Sbjct: 71 gcttctgttgccattctagccttggtatcctccccgaaagct-gtacaggatcatcaatg 13
Query: 309 taggaagtgt 318
|| |||||||
Sbjct: 12 taagaagtgt 3
>gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0020B10 5', DNA sequence
Length = 850
Score = 44.1 bits (22), Expect = 0.014
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 348 acaacaagatcattcagaacatcatcaagatgat 381
||||||||||| | ||||||||| ||||||||||
Sbjct: 787 acaacaagatcgtccagaacatcttcaagatgat 820
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,439
Number of Sequences: 832831
Number of extensions: 99439
Number of successful extensions: 26340
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26335
Number of HSP's gapped (non-prelim): 3
length of query: 567
length of database: 491,359,669
effective HSP length: 19
effective length of query: 548
effective length of database: 475,535,880
effective search space: 260593662240
effective search space used: 260593662240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)