BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) So... 214 2e-054
gb|BG557553.1|BG557553 EM1_54_H10.b1_A002 Embryo 1 (EM1) So... 109 7e-023
gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum b... 105 1e-021
gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation... 80 7e-014
gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infecte... 42 0.015
gb|CW346505.1|CW346505 fsbb001f006a22k0 Sorghum methylation... 40 0.057
gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2... 40 0.057
gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2... 40 0.057
gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated... 40 0.057
gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stresse... 40 0.057
gb|CN147262.1|CN147262 WOUND1_48_D07.g1_A002 Wounded leaves... 40 0.057
>gb|BG557554.1|BG557554 EM1_54_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 214 bits (108), Expect = 2e-054
Identities = 135/144 (93%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
||||| |||| ||||||||| ||||||||| | |||||||| ||||||||||||||||||
Sbjct: 239 ggatctcccagaaactcaccttgcacagaagagtttcctctgactccaaacaatccatat 298
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 299 ggcaaaacaaagcttgttgttgaggatatttgccgtgatatctaccgttcagatcctgaa 358
Query: 121 tggaagatcattttacttaggtac 144
||||||| ||||||||||||||||
Sbjct: 359 tggaagagcattttacttaggtac 382
>gb|BG557553.1|BG557553 EM1_54_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 310
Score = 109 bits (55), Expect = 7e-023
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 12 aaactcaccctgcacagaaaaatttcctcttactccaaacaatccatatggcaaaacaaa 71
||||||||| ||| ||||| | ||| || | |||||||||||||||||||||||||||||
Sbjct: 220 aaactcaccttgcgcagaagagtttgctatgactccaaacaatccatatggcaaaacaaa 279
Query: 72 gctcgttgttgaggatatttgccgggatatc 102
||| |||||||||||||||||||| ||||||
Sbjct: 280 gcttgttgttgaggatatttgccgtgatatc 310
>gb|CF489211.1|CF489211 POL1_55_A05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_A05_A002 5', mRNA sequence
Length = 639
Score = 105 bits (53), Expect = 1e-021
Identities = 119/141 (84%)
Strand = Plus / Plus
Query: 4 tcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatatggc 63
||||| || |||||||||||||| ||| | |||||||| |||||| | || |||||||||
Sbjct: 458 tcacctaagaactcaccctgcactgaagattttcctctcactccacataacccatatggc 517
Query: 64 aaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatgg 123
| ||| || || | | |||||| || ||||| |||||||||| ||||||||||||||||
Sbjct: 518 agaaccaaacttatggctgaggagatctgccgtgatatctaccattcagatcctgaatgg 577
Query: 124 aagatcattttacttaggtac 144
|| |||||||| |||||||||
Sbjct: 578 aatatcattttgcttaggtac 598
>gb|CW463888.1|CW463888 fsbb001f212n03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212n03, DNA
sequence
Length = 710
Score = 79.8 bits (40), Expect = 7e-014
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 81 tgaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttag 140
|||||| || ||||| |||||||||| |||||||||||||||||| |||||||| |||||
Sbjct: 237 tgaggagatctgccgtgatatctaccattcagatcctgaatggaatatcattttgcttag 178
Query: 141 gtac 144
||||
Sbjct: 177 gtac 174
Score = 50.1 bits (25), Expect = 6e-005
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 4 tcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatatggc 63
||||| || |||||||||||||| ||| | |||||||| |||||| | || |||||||||
Sbjct: 391 tcacctaagaactcaccctgcactgaagattttcctctcactccacataacccatatggc 332
Query: 64 a 64
|
Sbjct: 331 a 331
>gb|BM325263.1|BM325263 PIC1_42_D10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.015
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcattttacttaggtac 144
|||||||||| ||||| ||||||||||| | |||||||||
Sbjct: 508 accgttcagaccctgattggaagatcatactgcttaggtac 548
>gb|CW346505.1|CW346505 fsbb001f006a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f006a22, DNA
sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.057
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcat 131
|||||||||| ||||| |||||||||||
Sbjct: 266 accgttcagaccctgattggaagatcat 293
>gb|BG560333.1|BG560333 RHIZ2_73_B06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.057
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcat 131
|||||||||| ||||| |||||||||||
Sbjct: 499 accgttcagaccctgattggaagatcat 526
>gb|BG560363.1|BG560363 RHIZ2_73_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.057
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcat 131
|||||||||| ||||| |||||||||||
Sbjct: 499 accgttcagaccctgattggaagatcat 526
>gb|CD432207.1|CD432207 ETH1_26_G11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_26_G11_A002 5', mRNA sequence
Length = 788
Score = 40.1 bits (20), Expect = 0.057
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcat 131
|||||||||| ||||| |||||||||||
Sbjct: 707 accgttcagaccctgattggaagatcat 734
>gb|CF759649.1|CF759649 DSAF1_48_A01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_48_A01_A011 5', mRNA sequence
Length = 283
Score = 40.1 bits (20), Expect = 0.057
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcat 131
|||||||||| ||||| |||||||||||
Sbjct: 42 accgttcagaccctgattggaagatcat 69
>gb|CN147262.1|CN147262 WOUND1_48_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_D07_A002 5', mRNA sequence
Length = 820
Score = 40.1 bits (20), Expect = 0.057
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 104 accgttcagatcctgaatggaagatcat 131
|||||||||| ||||| |||||||||||
Sbjct: 696 accgttcagaccctgattggaagatcat 723
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,515
Number of Sequences: 832831
Number of extensions: 40515
Number of successful extensions: 10488
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10475
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 491,359,669
effective HSP length: 18
effective length of query: 146
effective length of database: 476,368,711
effective search space: 69549831806
effective search space used: 69549831806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)