BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH30c02.yg.2.1
(722 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW116836.1|CW116836 104_492_11107335_116_34608_054 Sorgh... 442 e-122
gb|CN126659.1|CN126659 RHOH1_18_A05.g1_A002 Acid- and alkal... 192 3e-047
gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propi... 40 0.28
>gb|CW116836.1|CW116836 104_492_11107335_116_34608_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107335, DNA
sequence
Length = 573
Score = 442 bits (223), Expect = e-122
Identities = 299/327 (91%)
Strand = Plus / Plus
Query: 272 ggtatcctccccaaacgctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggt 331
|||||||||||| || |||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 1 ggtatcctccccgaaagctgttacaggatcatcaatgtaagaagtgttcaacaaagtggt 60
Query: 332 gaatttagatagtgccacaacaagatcattcagaacatcaccaagatgatagaatgcagc 391
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 61 gaatttagatagtgccacaacaagatcattgagaacatcatcaagatgatagaatgcagc 120
Query: 392 cagtttcgccactgacagaaagccgtcaatgcatcctgtaagaacctcttcatgctcaac 451
|||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttttgccaccgacaggaagccatcaatgcatcctgtaagaacctcttcatgctcaac 180
Query: 452 gttatcaaaaaccacagaaacagcagcaactgttggtccggccataacagaaaacatgtc 511
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 attgtcaaaaaccacagaaacagcagcaactgttggtccggccataacggaaaacatgtc 240
Query: 512 atgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctttgaccnnna 571
||||||||| || ||||| ||| ||||||||| |||||||||| |||||||||| |
Sbjct: 241 atgatcaaggaaagggtaggagtcacaagcaatgtacattgatgttctctttgacctcca 300
Query: 572 cannagatnaacccaacgactgaaaga 598
|| |||| ||||||||||||||||||
Sbjct: 301 cattagatcaacccaacgactgaaaga 327
>gb|CN126659.1|CN126659 RHOH1_18_A05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_A05_A002 5', mRNA sequence
Length = 131
Score = 192 bits (97), Expect = 3e-047
Identities = 122/129 (94%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 189 attatgttcctccatccgctgcgtatgtgatcaccataaacagttgctatagtgaaaaca 248
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 131 attatgttcctccatccgctgcgtatatgatcaccataagcagttgctatagtgaaaaca 72
Query: 249 gcttctgttgccattctagccttggtatcctccccaaacgctgttacaggatcgtcaatg 308
||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||
Sbjct: 71 gcttctgttgccattctagccttggtatcctccccgaaagctg-tacaggatcatcaatg 13
Query: 309 taggaagtg 317
|| ||||||
Sbjct: 12 taagaagtg 4
>gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0020B10 5', DNA sequence
Length = 850
Score = 40.1 bits (20), Expect = 0.28
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 326 agtggtgaatttagatagtgccacaacaagatcattcagaacatcaccaagatgat 381
|||||||||||| |||| | ||||||||||| | ||||||||| |||||||||
Sbjct: 765 agtggtgaatttgcatagagaaacaacaagatcgtccagaacatcttcaagatgat 820
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,991
Number of Sequences: 832831
Number of extensions: 136991
Number of successful extensions: 36635
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36632
Number of HSP's gapped (non-prelim): 3
length of query: 722
length of database: 491,359,669
effective HSP length: 20
effective length of query: 702
effective length of database: 474,703,049
effective search space: 333241540398
effective search space used: 333241540398
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)