BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH2g03.yg.2.1
         (537 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF656184.1|BF656184  FM1_44_A08.b1_A003 Floral-Induced Me...   381   e-104
gb|CW474684.1|CW474684  fsbb001f230k23k0 Sorghum methylation...   274   8e-072
gb|CW474683.1|CW474683  fsbb001f230k23f0 Sorghum methylation...   210   1e-052
gb|CW788811.1|CW788811  SP__Ba0049F16.r SP__Ba Sorghum propi...    92   6e-017
gb|BG464188.1|BG464188  EM1_70_F11.b1_A002 Embryo 1 (EM1) So...    70   2e-010
gb|CD425534.1|CD425534  SA1_12_E03.g1_A002 Salicylic acid-tr...    58   9e-007
gb|CW408903.1|CW408903  fsbb001f102p21f0 Sorghum methylation...    50   2e-004
gb|CW408904.1|CW408904  fsbb001f102p21k0 Sorghum methylation...    50   2e-004
gb|BZ626646.1|BZ626646  ih47e08.b1 WGS-SbicolorF (DH5a methy...    42   0.051
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 413

 Score =  381 bits (192), Expect = e-104
 Identities = 231/248 (93%)
 Strand = Plus / Plus

                                                                       
Query: 290 caagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaa 349
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 13  caagaagattgaaaaggtttactactccgtgttagtcaaggcttctgttacaaaacctaa 72

                                                                       
Query: 350 tgagcctggtcagagccttgatcaggtcatctacaagataaaactaccaggtaatgccat 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tgagcctggtcagagccttgatcaggtcatctacaagataaaactaccaggtaatgccat 132

                                                                       
Query: 410 tttagntgaaggaaagccagaaaaccaganccatgcaataatattcacccganncgantn 469
           ||||| |||||||||||||||||| |||| |||||||||||||||||||||   ||| | 
Sbjct: 133 tttaggtgaaggaaagccagaaaatcagaaccatgcaataatattcacccgcggcgaatg 192

                                                                       
Query: 470 nntncaaactatagatatgaatcaggagcactatatggaggagncnttgaaaatgagnaa 529
             | ||||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct: 193 tctccaaactatagacatgaatcaggagcactatatggaggaggctttgaaaatgagaaa 252

                   
Query: 530 tctgctgc 537
           ||||||||
Sbjct: 253 tctgctgc 260
>gb|CW474684.1|CW474684 fsbb001f230k23k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f230k23, DNA
           sequence
          Length = 678

 Score =  274 bits (138), Expect = 8e-072
 Identities = 168/178 (94%)
 Strand = Plus / Plus

                                                                       
Query: 54  gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
           ||||||||| |||||||||||||||  ||||||||| |||||||||||| ||||| ||||
Sbjct: 253 gatcttatggaaggctacagagcaacagaagtaatgcctgaggactcacaattaatgact 312

                                                                       
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 313 caatgcaaggctatagctgacatgaagtttacatatgttgtctcatgccaacaatatgga 372

                                                                     
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacagagt 231
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 373 attcagaagcgttctaatgagccttgtgcacatgatattttgagactaatgacggagt 430

 Score = 91.7 bits (46), Expect = 6e-017
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 1   actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 150
>gb|CW474683.1|CW474683 fsbb001f230k23f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f230k23, DNA
           sequence
          Length = 613

 Score =  210 bits (106), Expect = 1e-052
 Identities = 118/122 (96%)
 Strand = Plus / Minus

                                                                       
Query: 110 gactcaatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactata 169
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 610 gactcaatgcaaggctatagctgacatgaagtttacatatgttgtctcatgccaacaata 551

                                                                       
Query: 170 tggaattcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacaga 229
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 550 tggaattcagaagcgttctaatgagccttgtgcacatgatattttgagactaatgacgga 491

             
Query: 230 gt 231
           ||
Sbjct: 490 gt 489
>gb|CW788811.1|CW788811 SP__Ba0049F16.r SP__Ba Sorghum propinquum genomic clone
           SP__Ba0049F16 3', DNA sequence
          Length = 588

 Score = 91.7 bits (46), Expect = 6e-017
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                       
Query: 230 gtatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaat 289
           ||||||||||||| |||| ||||||||||||||||||||| | ||||||  |||||||| 
Sbjct: 515 gtatccatcacttcgggttgcctatattgatgaagttgaaacgcccagcccagatagaaa 574

                         
Query: 290 caagaagattgaaa 303
           ||||||||||||||
Sbjct: 575 caagaagattgaaa 588
>gb|BG464188.1|BG464188 EM1_70_F11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 618

 Score = 69.9 bits (35), Expect = 2e-010
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 110 gactcaatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactata 169
           |||||||||||| |||||||| |||||||| || ||||||||||| |||||||| | |||
Sbjct: 553 gactcaatgcaaagctatagctgacatgaaattcacatatgttgtgtcatgccagcaata 612

              
Query: 170 tgg 172
           |||
Sbjct: 613 tgg 615

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 21  cttcaggcttttcttgatatggccaacaatgatgatcttatg 62
           ||||||||||| |||||||||||||   |||| |||||||||
Sbjct: 458 cttcaggctttccttgatatggccagagatgacgatcttatg 499
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
           cDNA clone SA1_12_E03_A002 5', mRNA sequence
          Length = 546

 Score = 58.0 bits (29), Expect = 9e-007
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 366 cttgatcaggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaag 425
           ||||||||||| |||||   ||||||||| |||||   ||| ||||| |  |||||||||
Sbjct: 292 cttgatcaggttatctatcggataaaacttccaggccctgcaattttgggagaaggaaag 351

                                              
Query: 426 ccagaaaaccaganccatgcaataatattcacccg 460
           || |||||||| |  ||||||||||| ||||||||
Sbjct: 352 cccgaaaaccaaaatcatgcaataattttcacccg 386
>gb|CW408903.1|CW408903 fsbb001f102p21f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102p21, DNA
           sequence
          Length = 704

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
           ||||||||||| |||||||| |  ||||||||||| ||||||||
Sbjct: 596 gaaggaaagcccgaaaaccaaaatcatgcaataattttcacccg 639
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102p21, DNA
           sequence
          Length = 785

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
           ||||||||||| |||||||| |  ||||||||||| ||||||||
Sbjct: 710 gaaggaaagcccgaaaaccaaaatcatgcaataattttcacccg 667
>gb|BZ626646.1|BZ626646 ih47e08.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
           genomic clone ih47e08 5', DNA sequence
          Length = 714

 Score = 42.1 bits (21), Expect = 0.051
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
           ||||| |||| |||||||| |||||||||||||
Sbjct: 631 aggctgtagcagacatgaaatttacatatgttg 599
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,385
Number of Sequences: 832831
Number of extensions: 112385
Number of successful extensions: 30549
Number of sequences better than  0.5: 9
Number of HSP's better than  0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30532
Number of HSP's gapped (non-prelim): 16
length of query: 537
length of database: 491,359,669
effective HSP length: 19
effective length of query: 518
effective length of database: 475,535,880
effective search space: 246327585840
effective search space used: 246327585840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)