BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH10g11.yg.2.1
(632 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorgh... 404 e-111
gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2... 196 2e-048
gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Me... 52 6e-005
gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient se... 52 6e-005
gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-tr... 46 0.004
gb|CW246572.1|CW246572 104_707_11221396_116_35083_008 Sorgh... 40 0.24
gb|CW246573.1|CW246573 104_707_11221396_116_37604_008 Sorgh... 40 0.24
gb|CW246574.1|CW246574 104_707_11221396_148_35087_008 Sorgh... 40 0.24
gb|CW408339.1|CW408339 fsbb001f102d02k0 Sorghum methylation... 40 0.24
gb|CW489170.1|CW489170 fsbb001f265p05f0 Sorghum methylation... 40 0.24
>gb|CL170430.1|CL170430 104_371_10813804_116_31791_124 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10813804, DNA
sequence
Length = 746
Score = 404 bits (204), Expect = e-111
Identities = 222/228 (97%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||||||||| || |||||||||||||||||| || ||||||||||||||||
Sbjct: 231 acagttgaaaccagcaaatatatcctcactaatgttgattgtttttgatgctttactgat 172
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 accacctcgtcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 112
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 52
Query: 181 agacatgaaccaagcaagagaagaaactgaacccgtgaagacgtgttc 228
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 51 agacatgaaccaagcaagagaagaaactgaacccgtgaagacatgttc 4
>gb|BG559259.1|BG559259 RHIZ2_52_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 196 bits (99), Expect = 2e-048
Identities = 117/123 (95%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||||||||| || |||||||||||||||||| || | ||||||||||||||
Sbjct: 131 acagttgaaaccagcaaatatatcctcactaatgttgattgttttcgatgctttactgat 72
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 accacctcgtcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 12
Query: 121 gac 123
|||
Sbjct: 11 gac 9
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 413
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 373 tgcatgattctgattttctggctttccttc 402
|||||| |||||||||||||||||||||||
Sbjct: 169 tgcatggttctgattttctggctttccttc 140
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 5', mRNA sequence
Length = 580
Score = 52.0 bits (26), Expect = 6e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 140 agaacacgctgccccagagtgacaaaacttgtctcctg 177
|||||||||||||||| ||| |||||||| ||||||||
Sbjct: 457 agaacacgctgccccaaagtaacaaaactagtctcctg 420
Score = 40.1 bits (20), Expect = 0.24
Identities = 65/80 (81%)
Strand = Plus / Minus
Query: 275 aactcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcata 334
|||||||| |||| |||||||| || | ||||| || |||||||| || || ||||||
Sbjct: 313 aactcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattcata 254
Query: 335 tcaatagtttgaactgcatc 354
|| || || |||||||||||
Sbjct: 253 tcgatcgtctgaactgcatc 234
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 5', mRNA sequence
Length = 546
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatc 336
|||||||| || ||||||||||| || |||||||| |||||| ||||
Sbjct: 455 tttctcattttaagagcttcttccaaatagttgtcctggttcgtatc 409
>gb|CW246572.1|CW246572 104_707_11221396_116_35083_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 ctgattttctggctttcctt 401
||||||||||||||||||||
Sbjct: 416 ctgattttctggctttcctt 397
>gb|CW246573.1|CW246573 104_707_11221396_116_37604_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 382 ctgattttctggctttcctt 401
||||||||||||||||||||
Sbjct: 416 ctgattttctggctttcctt 397
>gb|CW246574.1|CW246574 104_707_11221396_148_35087_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
sequence
Length = 760
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 382 ctgattttctggctttcctt 401
||||||||||||||||||||
Sbjct: 510 ctgattttctggctttcctt 529
>gb|CW408339.1|CW408339 fsbb001f102d02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102d02, DNA
sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 382 ctgattttctggctttcctt 401
||||||||||||||||||||
Sbjct: 531 ctgattttctggctttcctt 550
>gb|CW489170.1|CW489170 fsbb001f265p05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265p05, DNA
sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 382 ctgattttctggctttcctt 401
||||||||||||||||||||
Sbjct: 488 ctgattttctggctttcctt 507
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,850
Number of Sequences: 832831
Number of extensions: 148850
Number of successful extensions: 42097
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42083
Number of HSP's gapped (non-prelim): 14
length of query: 632
length of database: 491,359,669
effective HSP length: 19
effective length of query: 613
effective length of database: 475,535,880
effective search space: 291503494440
effective search space used: 291503494440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)