BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG22g05.yg.2.1
(681 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN146780.1|CN146780 WOUND1_43_E01.g1_A002 Wounded leaves... 270 2e-070
gb|CW047457.1|CW047457 104_285_10512741_114_30216 Sorghum m... 266 2e-069
gb|CW047458.1|CW047458 104_285_10512741_115_30217 Sorghum m... 234 9e-060
gb|CW116084.1|CW116084 104_491_11106919_116_34598_022 Sorgh... 226 2e-057
gb|BM323322.1|BM323322 PIC1_18_A04.b1_A002 Pathogen-infecte... 180 1e-043
gb|BG556751.1|BG556751 EM1_38_B03.b1_A002 Embryo 1 (EM1) So... 178 4e-043
gb|CW361944.1|CW361944 fsbb001f030m11k0 Sorghum methylation... 135 6e-030
gb|CW103239.1|CW103239 104_471_11011776_116_34429_084 Sorgh... 84 2e-014
gb|CW257806.1|CW257806 104_723_11227535_148_35156_090 Sorgh... 84 2e-014
gb|CW274174.1|CW274174 104_747_11404288_148_35371_064 Sorgh... 84 2e-014
gb|CW276520.1|CW276520 104_750_11405534_116_35395_059 Sorgh... 84 2e-014
gb|CW317873.1|CW317873 104_809_11473647_148_35863_050 Sorgh... 84 2e-014
gb|CW496248.1|CW496248 fsbb001f288g08k0 Sorghum methylation... 72 7e-011
gb|CW457745.1|CW457745 fsbb001f203l05f0 Sorghum methylation... 66 5e-009
gb|CD207000.1|CD207000 HS1_26_C11.g1_A012 Heat-shocked seed... 48 0.001
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 42 0.066
gb|BZ339819.1|BZ339819 ic35a09.g1 WGS-SbicolorF (JM107 adap... 40 0.26
gb|CL166746.1|CL166746 104_363_10809586_116_31801_034 Sorgh... 40 0.26
gb|CW169065.1|CW169065 104_578_11154478_116_36606_081 Sorgh... 40 0.26
gb|CW202010.1|CW202010 104_628_11184868_116_37087_014 Sorgh... 40 0.26
gb|CW371075.1|CW371075 fsbb001f046f18k0 Sorghum methylation... 40 0.26
gb|CW457746.1|CW457746 fsbb001f203l05k0 Sorghum methylation... 40 0.26
gb|BE595293.1|BE595293 PI1_48_C12.b1_A002 Pathogen induced ... 40 0.26
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.26
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.26
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.26
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.26
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.26
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.26
>gb|CN146780.1|CN146780 WOUND1_43_E01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_43_E01_A002 5', mRNA sequence
Length = 734
Score = 270 bits (136), Expect = 2e-070
Identities = 160/168 (95%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatc 76
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 319 gtactctgggtccaggtaacccactgttcctcgaactatacttgacacatgagacccatc 260
Query: 77 cactgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggag 136
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 cactgcaggtttcgatagcccaaagtctgcaacttttgctctcatgttcttgtctaggag 200
Query: 137 aatgttactgctcttcaggtctctatggatgattgttggggagcatcc 184
|||||| |||||||||| |||||||||||||||||| |||||||||||
Sbjct: 199 aatgttgctgctcttcaagtctctatggatgattgtcggggagcatcc 152
Score = 264 bits (133), Expect = 1e-068
Identities = 148/153 (96%)
Strand = Plus / Minus
Query: 204 cctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatta 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 153 cctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatctttacatta 94
Query: 264 tcagctccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatg 323
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 93 tcagttccacgaaggtgctctttaagtgtcccattatgcatgaactcgtacactagtatg 34
Query: 324 tttttgccatcttgctgactgtaaccaaggaat 356
||||||||| |||||||||||||||||||||||
Sbjct: 33 tttttgccaacttgctgactgtaaccaaggaat 1
>gb|CW047457.1|CW047457 104_285_10512741_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512741, DNA
sequence
Length = 485
Score = 266 bits (134), Expect = 2e-069
Identities = 160/170 (94%)
Strand = Plus / Minus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct: 286 acctcattcaagaattctcggattccctgataggagtcatttgtgagaagtttgactgca 227
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 226 atctctctcccatcagccaactttccatagtatactatgccaaagcctccagagccaatt 167
Query: 516 cttctctcaaatttgccantagcattttcaatttcagatnaagaaaatct 565
||||||||||||||| || |||||| ||||||||||||| ||||||||||
Sbjct: 166 cttctctcaaatttgtcagtagcatcttcaatttcagataaagaaaatct 117
>gb|CW047458.1|CW047458 104_285_10512741_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512741, DNA
sequence
Length = 578
Score = 234 bits (118), Expect = 9e-060
Identities = 127/130 (97%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 68 ccacggaggtgctcttttagtgtcccattatgcatgaactcgtacactagtatgttttta 127
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 187
Query: 390 aatgtcacct 399
||||||||||
Sbjct: 188 aatgtcacct 197
>gb|CW116084.1|CW116084 104_491_11106919_116_34598_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106919, DNA
sequence
Length = 641
Score = 226 bits (114), Expect = 2e-057
Identities = 155/170 (91%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||
Sbjct: 415 acctcattcaagaattctcggattccctgataggagtcatttgtgagaagtttgaccgca 474
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
||||||||||||||||||| |||||||||||| || || ||||||||||| | ||||||
Sbjct: 475 atctctctcccatcagccagctttccatagtacacaataccaaagcctccagagccaatt 534
Query: 516 cttctctcaaatttgccantagcattttcaatttcagatnaagaaaatct 565
||||||||||||||| || |||||| ||||||||||||| ||||||||||
Sbjct: 535 cttctctcaaatttgtcagtagcatcttcaatttcagataaagaaaatct 584
Score = 218 bits (110), Expect = 5e-055
Identities = 125/130 (96%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 26 ccacgaaggtgctctttaagtgtcccattatgcatgaactcgtacactagtatgtttttg 85
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 86 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtatcttggatagc 145
Query: 390 aatgtcacct 399
||||||||||
Sbjct: 146 aatgtcacct 155
>gb|BM323322.1|BM323322 PIC1_18_A04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 527
Score = 180 bits (91), Expect = 1e-043
Identities = 129/143 (90%)
Strand = Plus / Minus
Query: 423 tgatacgagtcattcgtgagaagtttgactgcaatctctctcccatcagccaactttcca 482
||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 527 tgataggagtcatttgtgagaagtttgaccgcaatctctctcccatcagccagctttcca 468
Query: 483 tagtatactatgccaaagcctccngncccaattcttctctcaaatttgccantagcattt 542
||||| || || ||||||||||| | ||||||||||||||||||||| || |||||| |
Sbjct: 467 tagtacacaataccaaagcctccagagccaattcttctctcaaatttgtcagtagcatct 408
Query: 543 tcaatttcagatnaagaaaatct 565
|||||||||||| ||||||||||
Sbjct: 407 tcaatttcagataaagaaaatct 385
>gb|BG556751.1|BG556751 EM1_38_B03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 457
Score = 178 bits (90), Expect = 4e-043
Identities = 128/142 (90%)
Strand = Plus / Minus
Query: 424 gatacgagtcattcgtgagaagtttgactgcaatctctctcccatcagccaactttccat 483
|||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 457 gataggagtcatttgtgagaagtttgaccgcaatctctctcccatcagccagctttccat 398
Query: 484 agtatactatgccaaagcctccngncccaattcttctctcaaatttgccantagcatttt 543
|||| || || ||||||||||| | ||||||||||||||||||||| || |||||| ||
Sbjct: 397 agtacacaataccaaagcctccagagccaattcttctctcaaatttgtcagtagcatctt 338
Query: 544 caatttcagatnaagaaaatct 565
||||||||||| ||||||||||
Sbjct: 337 caatttcagataaagaaaatct 316
>gb|CW361944.1|CW361944 fsbb001f030m11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030m11, DNA
sequence
Length = 605
Score = 135 bits (68), Expect = 6e-030
Identities = 95/104 (91%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 463 tcccatcagccaacttt-ccatagtatactatgccaaagcctccngncccaattcttctc 521
||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 603 tcccatcagccaacttttccatagtatattatgccaaagcctccagagccaattcttctc 544
Query: 522 tcaaatttgccantagcattttcaatttcagatnaagaaaatct 565
||||||||| || |||||| ||||||||||||| ||||||||||
Sbjct: 543 tcaaatttgtcagtagcatcttcaatttcagataaagaaaatct 500
>gb|CW103239.1|CW103239 104_471_11011776_116_34429_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011776, DNA
sequence
Length = 678
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 93 agcccaaagtctgccacttttgctctcatgttcttgtctaggagaatgttactgctcttc 152
||||||||||| | ||| || |||||||| | |||||| || || ||||| || ||||
Sbjct: 165 agcccaaagtcggacaccttggctctcatatgcttgtccagaaggatgttgctcgtcttg 106
Query: 153 aggtctctatggatgattgttggggagcatcccgtgtggagatactctatacctttcgca 212
| |||||| |||||||| | ||| | |||||| |||||||||||||| || |||||||||
Sbjct: 105 atgtctctgtggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgca 46
Query: 213 gaatcttctgcaatctcaagacgctt 238
| ||| || ||||||||||| |||||
Sbjct: 45 gcatcctcggcaatctcaagccgctt 20
>gb|CW257806.1|CW257806 104_723_11227535_148_35156_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227535, DNA
sequence
Length = 614
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 93 agcccaaagtctgccacttttgctctcatgttcttgtctaggagaatgttactgctcttc 152
||||||||||| | ||| || |||||||| | |||||| || || ||||| || ||||
Sbjct: 412 agcccaaagtcggacaccttggctctcatatgcttgtccagaaggatgttgctcgtcttg 471
Query: 153 aggtctctatggatgattgttggggagcatcccgtgtggagatactctatacctttcgca 212
| |||||| |||||||| | ||| | |||||| |||||||||||||| || |||||||||
Sbjct: 472 atgtctctgtggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgca 531
Query: 213 gaatcttctgcaatctcaagacgctt 238
| ||| || ||||||||||| |||||
Sbjct: 532 gcatcctcggcaatctcaagccgctt 557
>gb|CW274174.1|CW274174 104_747_11404288_148_35371_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404288, DNA
sequence
Length = 647
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 93 agcccaaagtctgccacttttgctctcatgttcttgtctaggagaatgttactgctcttc 152
||||||||||| | ||| || |||||||| | |||||| || || ||||| || ||||
Sbjct: 647 agcccaaagtcggacaccttggctctcatatgcttgtccagaaggatgttgctcgtcttg 588
Query: 153 aggtctctatggatgattgttggggagcatcccgtgtggagatactctatacctttcgca 212
| |||||| |||||||| | ||| | |||||| |||||||||||||| || |||||||||
Sbjct: 587 atgtctctgtggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgca 528
Query: 213 gaatcttctgcaatctcaagacgctt 238
| ||| || ||||||||||| |||||
Sbjct: 527 gcatcctcggcaatctcaagccgctt 502
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 279 tgctcttttagtgtcccattatgcatgaactcatacactagtatgttt 326
|||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 386 tgctctttgagcgttccattgtgcatgaactcgtacaccagaatgttt 339
>gb|CW276520.1|CW276520 104_750_11405534_116_35395_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405534, DNA
sequence
Length = 663
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 93 agcccaaagtctgccacttttgctctcatgttcttgtctaggagaatgttactgctcttc 152
||||||||||| | ||| || |||||||| | |||||| || || ||||| || ||||
Sbjct: 450 agcccaaagtcggacaccttggctctcatatgcttgtccagaaggatgttgctcgtcttg 509
Query: 153 aggtctctatggatgattgttggggagcatcccgtgtggagatactctatacctttcgca 212
| |||||| |||||||| | ||| | |||||| |||||||||||||| || |||||||||
Sbjct: 510 atgtctctgtggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgca 569
Query: 213 gaatcttctgcaatctcaagacgctt 238
| ||| || ||||||||||| |||||
Sbjct: 570 gcatcctcggcaatctcaagccgctt 595
>gb|CW317873.1|CW317873 104_809_11473647_148_35863_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473647, DNA
sequence
Length = 702
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 93 agcccaaagtctgccacttttgctctcatgttcttgtctaggagaatgttactgctcttc 152
||||||||||| | ||| || |||||||| | |||||| || || ||||| || ||||
Sbjct: 189 agcccaaagtcggacaccttggctctcatatgcttgtccagaaggatgttgctcgtcttg 130
Query: 153 aggtctctatggatgattgttggggagcatcccgtgtggagatactctatacctttcgca 212
| |||||| |||||||| | ||| | |||||| |||||||||||||| || |||||||||
Sbjct: 129 atgtctctgtggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgca 70
Query: 213 gaatcttctgcaatctcaagacgctt 238
| ||| || ||||||||||| |||||
Sbjct: 69 gcatcctcggcaatctcaagccgctt 44
>gb|CW496248.1|CW496248 fsbb001f288g08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288g08, DNA
sequence
Length = 537
Score = 71.9 bits (36), Expect = 7e-011
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 155 gtctctatggatgattgttggggagcatcccgtgtggagatactctatacctttcgcaga 214
|||||| |||||||| | ||| | |||||| |||||||||||||| || ||||||||||
Sbjct: 45 gtctctgtggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgcagc 104
Query: 215 atcttctgcaatctcaagacgctt 238
||| || ||||||||||| |||||
Sbjct: 105 atcctcggcaatctcaagccgctt 128
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 279 tgctcttttagtgtcccattatgcatgaactcatacactagtatgttt 326
|||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 244 tgctctttgagcgttccattgtgcatgaactcgtacaccagaatgttt 291
>gb|CW457745.1|CW457745 fsbb001f203l05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203l05, DNA
sequence
Length = 663
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 162 tggatgattgttggggagcatcccgtgtggagatactctatacctttcgcagaatcttct 221
|||||||| | ||| | |||||| |||||||||||||| || |||||||||| ||| ||
Sbjct: 3 tggatgatcgatggcgtgcatccagtgtggagatactcgatccctttcgcagcatcctcg 62
Query: 222 gcaatctcaagacgctt 238
||||||||||| |||||
Sbjct: 63 gcaatctcaagccgctt 79
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 279 tgctcttttagtgtcccattatgcatgaactcatacactagtatgttt 326
|||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 195 tgctctttgagcgttccattgtgcatgaactcgtacaccagaatgttt 242
>gb|CD207000.1|CD207000 HS1_26_C11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_26_C11_A012 5', mRNA sequence
Length = 680
Score = 48.1 bits (24), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 535 tagcattttcaatttcagatnaagaaaatct 565
|||||| ||||||||||||| ||||||||||
Sbjct: 676 tagcatcttcaatttcagataaagaaaatct 646
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtact 191
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtac 223
>gb|BZ339819.1|BZ339819 ic35a09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic35a09 5', DNA sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 279 tgctcttttagtgtcccattatgcatgaactcatacactagtatgttt 326
|||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 38 tgctctttgagcgttccattgtgcatgaactcgtacaccagaatgttt 85
>gb|CL166746.1|CL166746 104_363_10809586_116_31801_034 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809586, DNA
sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 300 tgcatgaactcatacactag 319
||||||||||||||||||||
Sbjct: 260 tgcatgaactcatacactag 241
>gb|CW169065.1|CW169065 104_578_11154478_116_36606_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154478, DNA
sequence
Length = 526
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 300 tgcatgaactcatacactag 319
||||||||||||||||||||
Sbjct: 107 tgcatgaactcatacactag 126
>gb|CW202010.1|CW202010 104_628_11184868_116_37087_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184868, DNA
sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 300 tgcatgaactcatacactag 319
||||||||||||||||||||
Sbjct: 147 tgcatgaactcatacactag 128
>gb|CW371075.1|CW371075 fsbb001f046f18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f046f18, DNA
sequence
Length = 761
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 300 tgcatgaactcatacactag 319
||||||||||||||||||||
Sbjct: 565 tgcatgaactcatacactag 546
>gb|CW457746.1|CW457746 fsbb001f203l05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203l05, DNA
sequence
Length = 740
Score = 40.1 bits (20), Expect = 0.26
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 279 tgctcttttagtgtcccattatgcatgaactcatacactagtatgttt 326
|||||||| || || ||||| ||||||||||| ||||| || ||||||
Sbjct: 684 tgctctttgagcgttccattgtgcatgaactcgtacaccagaatgttt 637
>gb|BE595293.1|BE595293 PI1_48_C12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 300 tgcatgaactcatacactag 319
||||||||||||||||||||
Sbjct: 386 tgcatgaactcatacactag 367
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 2 gcggccgcccgggcaggtac 21
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 65
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtac 100
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtac 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,839
Number of Sequences: 832831
Number of extensions: 121839
Number of successful extensions: 31374
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31327
Number of HSP's gapped (non-prelim): 46
length of query: 681
length of database: 491,359,669
effective HSP length: 19
effective length of query: 662
effective length of database: 475,535,880
effective search space: 314804752560
effective search space used: 314804752560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)