BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG16f05.yg.2.1
(585 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG101757.1|BG101757 EM1_5_H11.b1_A002 Embryo 1 (EM1) Sor... 759 0.0
gb|BG465749.1|BG465749 RHIZ2_48_B08.b1_A003 Rhizome2 (RHIZ2... 741 0.0
gb|BE594523.1|BE594523 PI1_34_C11.b1_A002 Pathogen induced ... 729 0.0
gb|CD429489.1|CD429489 ETH1_4_B03.g1_A002 Ethylene-treated ... 718 0.0
gb|CW316498.1|CW316498 104_808_11472925_116_35851_063 Sorgh... 214 7e-054
gb|CW277481.1|CW277481 104_751_11406051_116_35409_006 Sorgh... 170 9e-041
gb|CW277482.1|CW277482 104_751_11406051_148_35413_006 Sorgh... 170 9e-041
gb|CW316499.1|CW316499 104_808_11472925_148_35855_063 Sorgh... 170 9e-041
gb|CW325678.1|CW325678 104_820_11477816_116_35926_020 Sorgh... 46 0.004
>gb|BG101757.1|BG101757 EM1_5_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 516
Score = 759 bits (383), Expect = 0.0
Identities = 450/474 (94%)
Strand = Plus / Minus
Query: 25 tggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaaag 84
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct: 512 tggaacgtccaaatttccctgagcacacaacttggttcttttagaactagatgcggacag 453
Query: 85 ggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactctatc 144
||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 452 agaatgagcaacagagacagaaccaccagctacctcgatctcccatggagatactctatc 393
Query: 145 ttggccattacattcagcaccgtcctcccatcttaccagcaggcttctccacttcgagcc 204
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttggccgttacattcagcaccatcctcccatcttaccagcaggcttctccacttcgagcc 333
Query: 205 aggccatttcatgggatctatttcactaatgcgaacaaccactccagatcgcctttcact 264
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 332 aggccatttcatgggatctatttcactaatgcgaacaaccattccagatcgcctttcact 273
Query: 265 aacatcttcattatggcactgaaagttgatccttgctccaatacagactggatgattgag 324
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 272 aacatcttcattatggcactgaaagttgatccttgctccaacacagactggatgattgag 213
Query: 325 gctcttcaggaacttagcgtatggaataatatattctgaagcagtagctcttggattgta 384
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gctcttcaggaacttatggtatggaataatatattctgaagcagtagctcttggattgta 153
Query: 385 agaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccgtcaaagaatgccg 444
||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct: 152 agaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagccgacaatgtatgccg 93
Query: 445 ctttgtgctgtcactattgaaatcttcaaaaagggnnncatttttnngctgaat 498
|||||| ||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct: 92 ctttgtactgtcactactgaaatcttcaaaaagggcctcatttttaagctgaat 39
>gb|BG465749.1|BG465749 RHIZ2_48_B08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 741 bits (374), Expect = 0.0
Identities = 453/481 (94%)
Strand = Plus / Minus
Query: 18 acattgctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatg 77
|||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 acattgttggaacatccaaatttccctgagcacacaacttggttcttttagaactagatg 460
Query: 78 cagaaagggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagata 137
| || || ||||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 459 cggacagagaatgagcaacagaaacagaaccaccagctatctcgatctcccatggagata 400
Query: 138 ctctatcttggccattacattcagcaccgtcctcccatcttaccagcaggcttctccact 197
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctctatcttggctgttacattcggcaccgtcctcccatcttaccagcaggcttctccact 340
Query: 198 tcgagccaggccatttcatgggatctatttcactaatgcgaacaaccactccagatcgcc 257
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 339 tcgagccaggccatttcatgggttctatttcactaatgcgaacaaccattccagatcgcc 280
Query: 258 tttcactaacatcttcattatggcactgaaagttgatccttgctccaatacagactggat 317
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 279 tttcactaacatcttcattatggcattgaaagttgatccttgctccaatacagactggat 220
Query: 318 gattgaggctcttcaggaacttagcgtatggaataatatattctgaagcagtagctcttg 377
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 219 gattgaggctcttcaggaacttatggtatggaataatatattctgaagcagtagctcttg 160
Query: 378 gattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccgtcaaag 437
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 159 gattgtaagaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagccgacaatg 100
Query: 438 aatgccgctttgtgctgtcactattgaaatcttcaaaaagggnnncatttttnngctgaa 497
|||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct: 99 tatgccgctttgtactgtcactactgaaatcttcaaaaagggcctcatttttaagctgaa 40
Query: 498 t 498
|
Sbjct: 39 t 39
>gb|BE594523.1|BE594523 PI1_34_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 729 bits (368), Expect = 0.0
Identities = 422/440 (95%)
Strand = Plus / Minus
Query: 11 ccattccacattgctggaacgtccaaatttccctgaggacacaacttggttcttttagaa 70
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 ccattccacattgttggaacgtccaaatttccctgagcacacaacttggttcttttagaa 390
Query: 71 ctagatgcagaaagggaatgagaaacagagacagaaccaccagctatctcgatttcccat 130
|||||||| || || ||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct: 389 ctagatgcggacagagaatgagcaacagagacagaaccaccagctacctcgatctcccat 330
Query: 131 ggagatactctatcttggccattacattcagcaccgtcctcccatcttaccagcaggctt 190
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 329 ggagatactctatcttggccgttacattcagcaccatcctcccatcttaccagcaggctt 270
Query: 191 ctccacttcgagccaggccatttcatgggatctatttcactaatgcgaacaaccactcca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 269 ctccacttcgagccaggccatttcatgggatctatttcactaatgcgaacaaccattcca 210
Query: 251 gatcgcctttcactaacatcttcattatggcactgaaagttgatccttgctccaatacag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 209 gatcgcctttcactaacatcttcattatggcactgaaagttgatccttgctccaacacag 150
Query: 311 actggatgattgaggctcttcaggaacttagcgtatggaataatatattctgaagcagta 370
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 149 actggatgattgaggctcttcaggaacttatggtatggaataatatattctgaagcagta 90
Query: 371 gctcttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagcc 430
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 89 gctcttggattgtaagaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagcc 30
Query: 431 gtcaaagaatgccgctttgt 450
| ||| | ||||||||||||
Sbjct: 29 gacaatgtatgccgctttgt 10
>gb|CD429489.1|CD429489 ETH1_4_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_4_B03_A002 5', mRNA sequence
Length = 506
Score = 718 bits (362), Expect = 0.0
Identities = 422/442 (95%)
Strand = Plus / Minus
Query: 18 acattgctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatg 77
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 acattgttggaacgtccaaatttccctgagcacacaacttggttcttttagaactagatg 383
Query: 78 cagaaagggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagata 137
| || || ||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 382 cggacagagaatgagcaacagagacagaaccaccagctacctcgatctcccatggagata 323
Query: 138 ctctatcttggccattacattcagcaccgtcctcccatcttaccagcaggcttctccact 197
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 ctctatcttggccgttacattcagcaccatcctcccatcttaccagcaggcttctccact 263
Query: 198 tcgagccaggccatttcatgggatctatttcactaatgcgaacaaccactccagatcgcc 257
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 262 tcgagccaggccatttcatgggatctatttcactaatgcgaacaaccattccagatcgcc 203
Query: 258 tttcactaacatcttcattatggcactgaaagttgatccttgctccaatacagactggat 317
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 202 tttcactaacatcttcattatggcactgaaagttgatccttgctcctacacagactggat 143
Query: 318 gattgaggctcttcaggaacttagcgtatggaataatatattctgaagcagtagctcttg 377
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 142 gattgaggctcttcaggaacttatggtatggaataatatattctgaagcagtagctcttg 83
Query: 378 gattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccgtcaaag 437
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 82 gattgtaagaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagccgacaatg 23
Query: 438 aatgccgctttgtgctgtcact 459
|||||||||||| ||||||||
Sbjct: 22 tatgccgctttgtactgtcact 1
>gb|CW316498.1|CW316498 104_808_11472925_116_35851_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472925, DNA
sequence
Length = 649
Score = 214 bits (108), Expect = 7e-054
Identities = 117/120 (97%)
Strand = Plus / Plus
Query: 256 cctttcactaacatcttcattatggcactgaaagttgatccttgctccaatacagactgg 315
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 512 cctttcactaacatcttcattatggcactgaaagttgatccttgctccaacacagactgg 571
Query: 316 atgattgaggctcttcaggaacttagcgtatggaataatatattctgaagcagtagctct 375
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 572 atgattgaggctcttcaggaacttatggtatggaataatatattctgaagcagtagctct 631
Score = 153 bits (77), Expect = 2e-035
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaatgcg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaatgcg 417
Query: 238 aacaaccactccagatcgcct 258
|||||||| ||||||||||||
Sbjct: 418 aacaaccattccagatcgcct 438
>gb|CW277481.1|CW277481 104_751_11406051_116_35409_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406051, DNA
sequence
Length = 743
Score = 170 bits (86), Expect = 9e-041
Identities = 114/125 (91%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccgtc 433
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 304 cttggattgtaagaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagccgac 363
Query: 434 aaagaatgccgctttgtgctgtcactattgaaatcttcaaaaagggnnncatttttnngc 493
|| | |||||||||||| ||||||||| |||||||||||||||||| ||||||| ||
Sbjct: 364 aatgtatgccgctttgtactgtcactactgaaatcttcaaaaagggcctcatttttaagc 423
Query: 494 tgaat 498
|||||
Sbjct: 424 tgaat 428
>gb|CW277482.1|CW277482 104_751_11406051_148_35413_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406051, DNA
sequence
Length = 678
Score = 170 bits (86), Expect = 9e-041
Identities = 114/125 (91%)
Strand = Plus / Minus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccgtc 433
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 605 cttggattgtaagaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagccgac 546
Query: 434 aaagaatgccgctttgtgctgtcactattgaaatcttcaaaaagggnnncatttttnngc 493
|| | |||||||||||| ||||||||| |||||||||||||||||| ||||||| ||
Sbjct: 545 aatgtatgccgctttgtactgtcactactgaaatcttcaaaaagggcctcatttttaagc 486
Query: 494 tgaat 498
|||||
Sbjct: 485 tgaat 481
>gb|CW316499.1|CW316499 104_808_11472925_148_35855_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472925, DNA
sequence
Length = 754
Score = 170 bits (86), Expect = 9e-041
Identities = 114/125 (91%)
Strand = Plus / Minus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccgtc 433
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 203 cttggattgtaagaaatgtgaaaaacacttctgtgcttcaaggaatcagctacagccgac 144
Query: 434 aaagaatgccgctttgtgctgtcactattgaaatcttcaaaaagggnnncatttttnngc 493
|| | |||||||||||| ||||||||| |||||||||||||||||| ||||||| ||
Sbjct: 143 aatgtatgccgctttgtactgtcactactgaaatcttcaaaaagggcctcatttttaagc 84
Query: 494 tgaat 498
|||||
Sbjct: 83 tgaat 79
Score = 135 bits (68), Expect = 5e-030
Identities = 93/100 (93%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 276 tatggcactgaaagttgatccttgctccaatacagactggatgattgaggctcttcagga 335
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 753 tatggcactgaaagttgatcct-gctccaacacagactggatgatgagggctcttcagga 695
Query: 336 acttagcgtatggaataatatattctgaagcagtagctct 375
||||| |||||||||||||||||||||||||||||||||
Sbjct: 694 acttatggtatggaataatatattctgaagcagtagctct 655
>gb|CW325678.1|CW325678 104_820_11477816_116_35926_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477816, DNA
sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 117 tctcgatttcccatggagatactctat 143
||||||| |||||||||||||||||||
Sbjct: 225 tctcgatgtcccatggagatactctat 199
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,657
Number of Sequences: 832831
Number of extensions: 113657
Number of successful extensions: 29876
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29862
Number of HSP's gapped (non-prelim): 13
length of query: 585
length of database: 491,359,669
effective HSP length: 19
effective length of query: 566
effective length of database: 475,535,880
effective search space: 269153308080
effective search space used: 269153308080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)