BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Me... 654 0.0
gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfil... 90 3e-016
gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-tr... 80 3e-013
gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation... 60 3e-007
gb|CW788811.1|CW788811 SP__Ba0049F16.r SP__Ba Sorghum propi... 56 5e-006
gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorgh... 54 2e-005
gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorgh... 54 2e-005
gb|BZ626646.1|BZ626646 ih47e08.b1 WGS-SbicolorF (DH5a methy... 50 3e-004
gb|CW408903.1|CW408903 fsbb001f102p21f0 Sorghum methylation... 48 0.001
gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg... 42 0.073
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 42 0.073
gb|CW246572.1|CW246572 104_707_11221396_116_35083_008 Sorgh... 40 0.29
gb|CW246573.1|CW246573 104_707_11221396_116_37604_008 Sorgh... 40 0.29
gb|CW246574.1|CW246574 104_707_11221396_148_35087_008 Sorgh... 40 0.29
gb|CW408339.1|CW408339 fsbb001f102d02k0 Sorghum methylation... 40 0.29
gb|CW474683.1|CW474683 fsbb001f230k23f0 Sorghum methylation... 40 0.29
gb|CW474684.1|CW474684 fsbb001f230k23k0 Sorghum methylation... 40 0.29
gb|CW487844.1|CW487844 fsbb001f253o11f0 Sorghum methylation... 40 0.29
gb|CW489170.1|CW489170 fsbb001f265p05f0 Sorghum methylation... 40 0.29
gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient se... 40 0.29
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.29
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.29
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.29
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.29
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 40 0.29
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.29
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 413
Score = 654 bits (330), Expect = 0.0
Identities = 383/400 (95%), Gaps = 3/400 (0%)
Strand = Plus / Minus
Query: 184 gattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaacc 243
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 413 gattggcaagcactcgttgtccaattgtcacaaaactagtttcctgatttgacatgaacc 354
Query: 244 atgcaagggatgacacactgcccgtaaatatgtgttctctgactccaagcatcgatggat 303
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 353 atgcaagggatgacacactgcccgtaaatatgtgttctctgactccaagtattgatggat 294
Query: 304 atctcactccat---gtttcttctcaaactcttgcagcagatttctcattttcaaagcct 360
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 atctcactccatcatgtttcttctgaaactcttgcagcagatttctcattttcaaagcct 234
Query: 361 cctccatatagtgctcctgattcatatctatagtttggaggcattcgcctctggtgaata 420
||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||
Sbjct: 233 cctccatatagtgctcctgattcatgtctatagtttggagacattcgccgcgggtgaata 174
Query: 421 ttattgcatggttctgattttctggctttccttcacctaaaatggcattacctggtagct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 173 ttattgcatggttctgattttctggctttccttcacctaaaatggcattacctggtagtt 114
Query: 481 ttatcttgtagatgacctgatcaaggctctgaccaggctcatcaggttttgtaacagaag 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 113 ttatcttgtagatgacctgatcaaggctctgaccaggctcattaggttttgtaacagaag 54
Query: 541 ccttcaccaacactgagtagtaaaccttttcaatcttctt 580
|||| || ||||| ||||||||||||||||||||||||||
Sbjct: 53 ccttgactaacacggagtagtaaaccttttcaatcttctt 14
>gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10512125, DNA sequence
Length = 639
Score = 89.7 bits (45), Expect = 3e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 24 tggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 58
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 5', mRNA sequence
Length = 546
Score = 79.8 bits (40), Expect = 3e-013
Identities = 196/248 (79%)
Strand = Plus / Minus
Query: 258 acactgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccatgt 317
|||||||| ||||| ||||| ||||| |||||||| || |||||| | |||||||||
Sbjct: 539 acactgccagtaaaaatgtgctctctaactccaagtatagatggacgccgcactccatgc 480
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
| | | |||||||| ||||||||||||||||| | ||| || |||| ||||| |||
Sbjct: 479 tccgtaaggaactcttggagcagatttctcattttaagagcttcttccaaatagttgtcc 420
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
|| ||| ||||||| || || | || ||| || | |||||| ||||||||||| || ||
Sbjct: 419 tggttcgtatctatggtctgcaagccttcaccacgggtgaaaattattgcatgattttgg 360
Query: 438 ttttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatgacc 497
||||| ||||||||||| || ||||| ||| ||||| || |||||| ||||| |||
Sbjct: 359 ttttcgggctttccttctcccaaaattgcagggcctggaagttttatccgatagataacc 300
Query: 498 tgatcaag 505
||||||||
Sbjct: 299 tgatcaag 292
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 785
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 225 tcctgatttgacatgaaccatgcaagggatgacacact 262
||||||||||||||||||||||||||||| || |||||
Sbjct: 320 tcctgatttgacatgaaccatgcaagggaagatacact 357
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||||||||| || || | || ||| || | |||||| ||||||||||| || |
Sbjct: 632 cctggttcatatctatggtctgcaagccttcaccacgggtgaaaattattgcatgatttt 691
Query: 436 gattttctggctttccttcacctaaaat 463
| ||||| ||||||||||| || |||||
Sbjct: 692 ggttttcgggctttccttctcccaaaat 719
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 327 aactcttgcagcagatttctcatttt 352
|||||||| |||||||||||||||||
Sbjct: 499 aactcttggagcagatttctcatttt 524
>gb|CW788811.1|CW788811 SP__Ba0049F16.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0049F16 3', DNA sequence
Length = 588
Score = 56.0 bits (28), Expect = 5e-006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 568 tttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatcaatataggc 622
||||||||||||| ||||||| | || |||| ||||||||||||||||||||
Sbjct: 588 tttcaatcttcttgtttctatctgggctgggcgtttcaacttcatcaatataggc 534
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
sequence
Length = 644
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||| ||||| ||| | |||||||||||||||||||| |||||
Sbjct: 99 aaactcttccagcaaattccgcattttcaaagcctcctccaaatagt 53
>gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474232, DNA
sequence
Length = 750
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||| ||||| ||| | |||||||||||||||||||| |||||
Sbjct: 551 aaactcttccagcaaattccgcattttcaaagcctcctccaaatagt 505
Score = 50.1 bits (25), Expect = 3e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||| ||||||||||| ||| || | || || || ||||||||||| |
Sbjct: 429 cctgattcatatcgatagtttggagtgcttcaccccgtgtaaaaatgattgcatggtttt 370
Query: 436 gattttctggctttccttcacctaa 460
||||||| || || |||||||||||
Sbjct: 369 gattttccggtttgccttcacctaa 345
>gb|BZ626646.1|BZ626646 ih47e08.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih47e08 5', DNA sequence
Length = 714
Score = 50.1 bits (25), Expect = 3e-004
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||| ||||||||||| ||| || | || || || ||||||||||| |
Sbjct: 6 cctgattcatatcgatagtttggagtgcttcaccccgtgtaaaaatgattgcatggtttt 65
Query: 436 gattttctggctttccttcacctaa 460
||||||| || || |||||||||||
Sbjct: 66 gattttccggtttgccttcacctaa 90
>gb|CW408903.1|CW408903 fsbb001f102p21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102p21, DNA
sequence
Length = 704
Score = 48.1 bits (24), Expect = 0.001
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||||||||| || || | || ||| || | |||||| ||||||||||| || |
Sbjct: 674 cctggttcatatctatggtctgcaagccttcaccacgggtgaaaattattgcatgatttt 615
Query: 436 gattttctggctttccttcacctaaaat 463
| ||||| ||||||||||| || |||||
Sbjct: 614 ggttttcgggctttccttctcccaaaat 587
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 57 ttgaatcctgcaaatatgtcctcactgagattg 89
|||||||||||| |||| |||||||||| ||||
Sbjct: 355 ttgaatcctgcatatatatcctcactgatattg 323
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtact 191
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtac 223
>gb|CW246572.1|CW246572 104_707_11221396_116_35083_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 434 ctgattttctggctttcctt 453
||||||||||||||||||||
Sbjct: 416 ctgattttctggctttcctt 397
>gb|CW246573.1|CW246573 104_707_11221396_116_37604_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 434 ctgattttctggctttcctt 453
||||||||||||||||||||
Sbjct: 416 ctgattttctggctttcctt 397
>gb|CW246574.1|CW246574 104_707_11221396_148_35087_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
sequence
Length = 760
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ctgattttctggctttcctt 453
||||||||||||||||||||
Sbjct: 510 ctgattttctggctttcctt 529
>gb|CW408339.1|CW408339 fsbb001f102d02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102d02, DNA
sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ctgattttctggctttcctt 453
||||||||||||||||||||
Sbjct: 531 ctgattttctggctttcctt 550
>gb|CW474683.1|CW474683 fsbb001f230k23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f230k23, DNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 651 agtctcaaaatatcatgtgc 670
||||||||||||||||||||
Sbjct: 500 agtctcaaaatatcatgtgc 519
>gb|CW474684.1|CW474684 fsbb001f230k23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f230k23, DNA
sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 651 agtctcaaaatatcatgtgc 670
||||||||||||||||||||
Sbjct: 419 agtctcaaaatatcatgtgc 400
>gb|CW487844.1|CW487844 fsbb001f253o11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253o11, DNA
sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 380 attcatatctatagtttgga 399
||||||||||||||||||||
Sbjct: 119 attcatatctatagtttgga 138
>gb|CW489170.1|CW489170 fsbb001f265p05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265p05, DNA
sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 434 ctgattttctggctttcctt 453
||||||||||||||||||||
Sbjct: 488 ctgattttctggctttcctt 507
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G07_A002 5', mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.29
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 341 atttctcattttcaaagcctcctccatatagtgctcctgattcatatc 388
|||||||||||||| || ||||||| |||| ||||||||||||||
Sbjct: 299 atttctcattttcattgcttcctccaagtagttatcctgattcatatc 252
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 2 gcggccgcccgggcaggtac 21
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 65
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtac 100
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtac 2
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,016
Number of Sequences: 832831
Number of extensions: 151016
Number of successful extensions: 38655
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38613
Number of HSP's gapped (non-prelim): 41
length of query: 755
length of database: 491,359,669
effective HSP length: 20
effective length of query: 735
effective length of database: 474,703,049
effective search space: 348906741015
effective search space used: 348906741015
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)