BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCG13d12.yg.2.1
         (755 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF656184.1|BF656184  FM1_44_A08.b1_A003 Floral-Induced Me...   654   0.0  
gb|CW513921.1|CW513921  115_5_10512125_1_30022 Sorghum unfil...    90   3e-016
gb|CD425534.1|CD425534  SA1_12_E03.g1_A002 Salicylic acid-tr...    80   3e-013
gb|CW408904.1|CW408904  fsbb001f102p21k0 Sorghum methylation...    60   3e-007
gb|CW788811.1|CW788811  SP__Ba0049F16.r SP__Ba Sorghum propi...    56   5e-006
gb|CW133264.1|CW133264  104_517_11116666_148_34813_047 Sorgh...    54   2e-005
gb|CW318957.1|CW318957  104_811_11474232_148_35883_090 Sorgh...    54   2e-005
gb|BZ626646.1|BZ626646  ih47e08.b1 WGS-SbicolorF (DH5a methy...    50   3e-004
gb|CW408903.1|CW408903  fsbb001f102p21f0 Sorghum methylation...    48   0.001
gb|BG054341.1|BG054341  OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorg...    42   0.073
gb|CF675626.1|CF675626  THAU2 Subtractive cDNA library from ...    42   0.073
gb|CW246572.1|CW246572  104_707_11221396_116_35083_008 Sorgh...    40   0.29 
gb|CW246573.1|CW246573  104_707_11221396_116_37604_008 Sorgh...    40   0.29 
gb|CW246574.1|CW246574  104_707_11221396_148_35087_008 Sorgh...    40   0.29 
gb|CW408339.1|CW408339  fsbb001f102d02k0 Sorghum methylation...    40   0.29 
gb|CW474683.1|CW474683  fsbb001f230k23f0 Sorghum methylation...    40   0.29 
gb|CW474684.1|CW474684  fsbb001f230k23k0 Sorghum methylation...    40   0.29 
gb|CW487844.1|CW487844  fsbb001f253o11f0 Sorghum methylation...    40   0.29 
gb|CW489170.1|CW489170  fsbb001f265p05f0 Sorghum methylation...    40   0.29 
gb|CF074169.1|CF074169  FE1_21_G07.g1_A002 Iron-deficient se...    40   0.29 
gb|CF675675.1|CF675675  RUBISCO Subtractive cDNA library fro...    40   0.29 
gb|DR831561.1|DR831561  MT14 Sorghum bicolor greenbug-respon...    40   0.29 
gb|DV162795.1|DV162795  P1-M15 Sorghum bicolor greenbug-resp...    40   0.29 
gb|DV162819.1|DV162819  P5-B11 Sorghum bicolor greenbug-resp...    40   0.29 
gb|DV162820.1|DV162820  P3-G6 Sorghum bicolor greenbug-respo...    40   0.29 
gb|DV162819.2|DV162819  P5-B11 Sorghum bicolor greenbug-resp...    40   0.29 
>gb|BF656184.1|BF656184 FM1_44_A08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 413

 Score =  654 bits (330), Expect = 0.0
 Identities = 383/400 (95%), Gaps = 3/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 184 gattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaacc 243
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 413 gattggcaagcactcgttgtccaattgtcacaaaactagtttcctgatttgacatgaacc 354

                                                                       
Query: 244 atgcaagggatgacacactgcccgtaaatatgtgttctctgactccaagcatcgatggat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 353 atgcaagggatgacacactgcccgtaaatatgtgttctctgactccaagtattgatggat 294

                                                                       
Query: 304 atctcactccat---gtttcttctcaaactcttgcagcagatttctcattttcaaagcct 360
           ||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 atctcactccatcatgtttcttctgaaactcttgcagcagatttctcattttcaaagcct 234

                                                                       
Query: 361 cctccatatagtgctcctgattcatatctatagtttggaggcattcgcctctggtgaata 420
           ||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||
Sbjct: 233 cctccatatagtgctcctgattcatgtctatagtttggagacattcgccgcgggtgaata 174

                                                                       
Query: 421 ttattgcatggttctgattttctggctttccttcacctaaaatggcattacctggtagct 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 173 ttattgcatggttctgattttctggctttccttcacctaaaatggcattacctggtagtt 114

                                                                       
Query: 481 ttatcttgtagatgacctgatcaaggctctgaccaggctcatcaggttttgtaacagaag 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 113 ttatcttgtagatgacctgatcaaggctctgaccaggctcattaggttttgtaacagaag 54

                                                   
Query: 541 ccttcaccaacactgagtagtaaaccttttcaatcttctt 580
           |||| || ||||| ||||||||||||||||||||||||||
Sbjct: 53  ccttgactaacacggagtagtaaaccttttcaatcttctt 14
>gb|CW513921.1|CW513921 115_5_10512125_1_30022 Sorghum unfiltered library (LibID: 115)
           Sorghum bicolor genomic clone 10512125, DNA sequence
          Length = 639

 Score = 89.7 bits (45), Expect = 3e-016
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 24  tggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 58
>gb|CD425534.1|CD425534 SA1_12_E03.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
           cDNA clone SA1_12_E03_A002 5', mRNA sequence
          Length = 546

 Score = 79.8 bits (40), Expect = 3e-013
 Identities = 196/248 (79%)
 Strand = Plus / Minus

                                                                       
Query: 258 acactgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccatgt 317
           |||||||| ||||| ||||| ||||| |||||||| || ||||||   | ||||||||| 
Sbjct: 539 acactgccagtaaaaatgtgctctctaactccaagtatagatggacgccgcactccatgc 480

                                                                       
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
           | | |    |||||||| ||||||||||||||||| | ||| || |||| |||||  |||
Sbjct: 479 tccgtaaggaactcttggagcagatttctcattttaagagcttcttccaaatagttgtcc 420

                                                                       
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
           || ||| ||||||| || || | || ||| || | |||||| ||||||||||| || || 
Sbjct: 419 tggttcgtatctatggtctgcaagccttcaccacgggtgaaaattattgcatgattttgg 360

                                                                       
Query: 438 ttttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatgacc 497
           ||||| ||||||||||| || ||||| |||   ||||| || ||||||   ||||| |||
Sbjct: 359 ttttcgggctttccttctcccaaaattgcagggcctggaagttttatccgatagataacc 300

                   
Query: 498 tgatcaag 505
           ||||||||
Sbjct: 299 tgatcaag 292
>gb|CW408904.1|CW408904 fsbb001f102p21k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102p21, DNA
           sequence
          Length = 785

 Score = 60.0 bits (30), Expect = 3e-007
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 225 tcctgatttgacatgaaccatgcaagggatgacacact 262
           ||||||||||||||||||||||||||||| || |||||
Sbjct: 320 tcctgatttgacatgaaccatgcaagggaagatacact 357

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                       
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
           |||| ||||||||||| || || | || ||| || | |||||| ||||||||||| || |
Sbjct: 632 cctggttcatatctatggtctgcaagccttcaccacgggtgaaaattattgcatgatttt 691

                                       
Query: 436 gattttctggctttccttcacctaaaat 463
           | ||||| ||||||||||| || |||||
Sbjct: 692 ggttttcgggctttccttctcccaaaat 719

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 327 aactcttgcagcagatttctcatttt 352
           |||||||| |||||||||||||||||
Sbjct: 499 aactcttggagcagatttctcatttt 524
>gb|CW788811.1|CW788811 SP__Ba0049F16.r SP__Ba Sorghum propinquum genomic clone
           SP__Ba0049F16 3', DNA sequence
          Length = 588

 Score = 56.0 bits (28), Expect = 5e-006
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 568 tttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatcaatataggc 622
           |||||||||||||   ||||||| | || ||||  ||||||||||||||||||||
Sbjct: 588 tttcaatcttcttgtttctatctgggctgggcgtttcaacttcatcaatataggc 534
>gb|CW133264.1|CW133264 104_517_11116666_148_34813_047 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11116666, DNA
           sequence
          Length = 644

 Score = 54.0 bits (27), Expect = 2e-005
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
           |||||||| ||||| ||| | |||||||||||||||||||| |||||
Sbjct: 99  aaactcttccagcaaattccgcattttcaaagcctcctccaaatagt 53
>gb|CW318957.1|CW318957 104_811_11474232_148_35883_090 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11474232, DNA
           sequence
          Length = 750

 Score = 54.0 bits (27), Expect = 2e-005
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
           |||||||| ||||| ||| | |||||||||||||||||||| |||||
Sbjct: 551 aaactcttccagcaaattccgcattttcaaagcctcctccaaatagt 505

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
           ||||||||||||| |||||||||||   ||| || |  || || || ||||||||||| |
Sbjct: 429 cctgattcatatcgatagtttggagtgcttcaccccgtgtaaaaatgattgcatggtttt 370

                                    
Query: 436 gattttctggctttccttcacctaa 460
           ||||||| || || |||||||||||
Sbjct: 369 gattttccggtttgccttcacctaa 345
>gb|BZ626646.1|BZ626646 ih47e08.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
           genomic clone ih47e08 5', DNA sequence
          Length = 714

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                       
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
           ||||||||||||| |||||||||||   ||| || |  || || || ||||||||||| |
Sbjct: 6   cctgattcatatcgatagtttggagtgcttcaccccgtgtaaaaatgattgcatggtttt 65

                                    
Query: 436 gattttctggctttccttcacctaa 460
           ||||||| || || |||||||||||
Sbjct: 66  gattttccggtttgccttcacctaa 90
>gb|CW408903.1|CW408903 fsbb001f102p21f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102p21, DNA
           sequence
          Length = 704

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                       
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
           |||| ||||||||||| || || | || ||| || | |||||| ||||||||||| || |
Sbjct: 674 cctggttcatatctatggtctgcaagccttcaccacgggtgaaaattattgcatgatttt 615

                                       
Query: 436 gattttctggctttccttcacctaaaat 463
           | ||||| ||||||||||| || |||||
Sbjct: 614 ggttttcgggctttccttctcccaaaat 587
>gb|BG054341.1|BG054341 OV2_3_A09.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
          Length = 528

 Score = 42.1 bits (21), Expect = 0.073
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 57  ttgaatcctgcaaatatgtcctcactgagattg 89
           |||||||||||| |||| |||||||||| ||||
Sbjct: 355 ttgaatcctgcatatatatcctcactgatattg 323
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
           aphids Sorghum bicolor cDNA clone THAU2 similar to
           Thaumatin-like protein, mRNA sequence
          Length = 747

 Score = 42.1 bits (21), Expect = 0.073
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtact 21
           |||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtact 191

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtac 223
>gb|CW246572.1|CW246572 104_707_11221396_116_35083_008 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
           sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 434 ctgattttctggctttcctt 453
           ||||||||||||||||||||
Sbjct: 416 ctgattttctggctttcctt 397
>gb|CW246573.1|CW246573 104_707_11221396_116_37604_008 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
           sequence
          Length = 628

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 434 ctgattttctggctttcctt 453
           ||||||||||||||||||||
Sbjct: 416 ctgattttctggctttcctt 397
>gb|CW246574.1|CW246574 104_707_11221396_148_35087_008 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11221396, DNA
           sequence
          Length = 760

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 ctgattttctggctttcctt 453
           ||||||||||||||||||||
Sbjct: 510 ctgattttctggctttcctt 529
>gb|CW408339.1|CW408339 fsbb001f102d02k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f102d02, DNA
           sequence
          Length = 706

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 ctgattttctggctttcctt 453
           ||||||||||||||||||||
Sbjct: 531 ctgattttctggctttcctt 550
>gb|CW474683.1|CW474683 fsbb001f230k23f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f230k23, DNA
           sequence
          Length = 613

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 651 agtctcaaaatatcatgtgc 670
           ||||||||||||||||||||
Sbjct: 500 agtctcaaaatatcatgtgc 519
>gb|CW474684.1|CW474684 fsbb001f230k23k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f230k23, DNA
           sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 651 agtctcaaaatatcatgtgc 670
           ||||||||||||||||||||
Sbjct: 419 agtctcaaaatatcatgtgc 400
>gb|CW487844.1|CW487844 fsbb001f253o11f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f253o11, DNA
           sequence
          Length = 530

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 attcatatctatagtttgga 399
           ||||||||||||||||||||
Sbjct: 119 attcatatctatagtttgga 138
>gb|CW489170.1|CW489170 fsbb001f265p05f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f265p05, DNA
           sequence
          Length = 790

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 434 ctgattttctggctttcctt 453
           ||||||||||||||||||||
Sbjct: 488 ctgattttctggctttcctt 507
>gb|CF074169.1|CF074169 FE1_21_G07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
           clone FE1_21_G07_A002 5', mRNA sequence
          Length = 580

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 341 atttctcattttcaaagcctcctccatatagtgctcctgattcatatc 388
           ||||||||||||||  || |||||||  ||||  ||||||||||||||
Sbjct: 299 atttctcattttcattgcttcctccaagtagttatcctgattcatatc 252
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
           aphids Sorghum bicolor cDNA clone RUBISCO similar to
           Ribulose 1,5-biphosphate carboxylase, mRNA sequence
          Length = 638

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 112

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 2  gcggccgcccgggcaggtac 21
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 282

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 234

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 65
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
           bicolor cDNA 5', mRNA sequence
          Length = 223

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtac 100
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 172

 Score = 40.1 bits (20), Expect = 0.29
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtac 2
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,016
Number of Sequences: 832831
Number of extensions: 151016
Number of successful extensions: 38655
Number of sequences better than  0.5: 26
Number of HSP's better than  0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38613
Number of HSP's gapped (non-prelim): 41
length of query: 755
length of database: 491,359,669
effective HSP length: 20
effective length of query: 735
effective length of database: 474,703,049
effective search space: 348906741015
effective search space used: 348906741015
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)