BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA17a05.yg.2.1
(548 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkal... 385 e-105
gb|CD222290.1|CD222290 CCC1_21_D09.b1_A007 Callus culture/c... 74 1e-011
gb|CL188319.1|CL188319 104_404_10901510_116_32449_053 Sorgh... 66 4e-009
gb|CW162268.1|CW162268 104_569_11150854_148_36442_087 Sorgh... 66 4e-009
gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum m... 60 2e-007
gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorgh... 60 2e-007
gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorgh... 60 2e-007
gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation... 60 2e-007
gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation... 60 2e-007
gb|AW285397.1|AW285397 LG1_244_H02.g1_A002 Light Grown 1 (L... 60 2e-007
gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle... 60 2e-007
gb|AF466200.2| Sorghum bicolor putative protein kinase gene... 60 2e-007
gb|BZ347771.1|BZ347771 ho34d08.g2 WGS-SbicolorF (JM107 adap... 58 9e-007
gb|CW125304.1|CW125304 104_505_11112259_148_34709_072 Sorgh... 54 1e-005
gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Me... 52 5e-005
gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Me... 52 5e-005
gb|BG050366.1|BG050366 FM1_53_B07.g1_A003 Floral-Induced Me... 52 5e-005
gb|BZ349938.1|BZ349938 hr47e06.g1 WGS-SbicolorF (JM107 adap... 50 2e-004
gb|CW023926.1|CW023926 104_164_10434653_5_30003 Sorghum met... 42 0.053
gb|CW151158.1|CW151158 104_551_11143790_116_36310_049 Sorgh... 42 0.053
gb|CW204837.1|CW204837 104_633_11186760_148_36927_096 Sorgh... 42 0.053
gb|BM327318.1|BM327318 PIC1_12_A06.g1_A002 Pathogen-infecte... 40 0.21
gb|CF757196.1|CF757196 DSAF1_14_H08.g1_A011 Drought-stresse... 40 0.21
gb|CF758925.1|CF758925 DSAF1_38_B12.g1_A011 Drought-stresse... 40 0.21
>gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D05_A002 5', mRNA sequence
Length = 844
Score = 385 bits (194), Expect = e-105
Identities = 263/286 (91%)
Strand = Plus / Minus
Query: 263 cccctgggggcctcatgttatctgtagttacagcagtgcgctctccccgctgacagcttc 322
|||||||| |||||||||||| ||||||||||||| | | | ||| |||||||| |||
Sbjct: 588 cccctgggagcctcatgttatatgtagttacagcaatcccggcgccctgctgacagtttc 529
Query: 323 tcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacg 382
||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 528 tcccagaggcacagcatgtgccagggggactggtagtgcgccgtcaagtagtaatccacg 469
Query: 383 cagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggcgttgtag 442
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct: 468 cagccgaactggcagaacctccagctgtggacgtactgcacgggggcgctcgcgttgaag 409
Query: 443 tcctccacccacatgcccatgctcacgtcctccatcttgaacagccgtagggagtggttt 502
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 408 tcctccacccacatgcccatgctcacatcctccatcttgaacagccgtagggagtgattt 349
Query: 503 gtatgccgggatgctacgtctctcgcaatgccggccgagataacgt 548
|||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct: 348 gtatgccgggatgctatgtctctcgcgatgtcggccgagataacgt 303
>gb|CD222290.1|CD222290 CCC1_21_D09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_D09_A007 3', mRNA sequence
Length = 620
Score = 73.8 bits (37), Expect = 1e-011
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 445 ctccacccacatgcccatgctcacgtcctccatcttgaacagccg 489
|||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 65 ctccacccacatgcccatgctcacatcctccatcttaaacagccg 21
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 347 ggggactggtagtgcgccgtgaagtag 373
|||||||||||||||||||||||||||
Sbjct: 166 ggggactggtagtgcgccgtgaagtag 140
>gb|CL188319.1|CL188319 104_404_10901510_116_32449_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901510, DNA
sequence
Length = 708
Score = 65.9 bits (33), Expect = 4e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 236 ccacccacatccccatgctcacatcctccatcttgaacagc 196
Score = 61.9 bits (31), Expect = 6e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 317 agcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttg 376
||||||||||||||||||| ||||||| || |||||||||||||| |||| ||||
Sbjct: 375 agcttctcccagaggcacaccatctgcgccggcgactggtagtgcgcggtgaggtagcca 316
Query: 377 tccacgcagccgaactggcagaa 399
| ||||||||| ||||||||||
Sbjct: 315 ttgacgcagccggactggcagaa 293
>gb|CW162268.1|CW162268 104_569_11150854_148_36442_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150854, DNA
sequence
Length = 754
Score = 65.9 bits (33), Expect = 4e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 262 ccacccacatccccatgctcacatcctccatcttgaacagc 222
Score = 61.9 bits (31), Expect = 6e-008
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 317 agcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttg 376
||||||||||||||||||| ||||||| || |||||||||||||| |||| ||||
Sbjct: 401 agcttctcccagaggcacaccatctgcgccggcgactggtagtgcgcggtgaggtagcca 342
Query: 377 tccacgcagccgaactggcagaa 399
| ||||||||| ||||||||||
Sbjct: 341 ttgacgcagccggactggcagaa 319
>gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508891, DNA
sequence
Length = 554
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 268 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 327
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 328 ctggcagaagttccagctgtgg 349
>gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002794, DNA
sequence
Length = 660
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 102 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 161
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 162 ctggcagaagttccagctgtgg 183
>gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157034, DNA
sequence
Length = 642
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 386 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 445
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 446 ctggcagaagttccagctgtgg 467
>gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 703
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 697 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 638
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 637 ctggcagaagttccagctgtgg 616
>gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 660
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 271 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 330
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 331 ctggcagaagttccagctgtgg 352
>gb|AW285397.1|AW285397 LG1_244_H02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 98 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 39
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 38 ctggcagaagttccagctgtgg 17
>gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 244 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 185
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 184 ctggcagaagttccagctgtgg 163
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
fertilization-independent endosperm proteins, hypothetical
protein, putative non-LTR retroelement reverse
transcriptase, OCL5 protein, tryptophan synthase
beta-subunit, hypothetical proteins, putative AP
endonuclease, putative RNA polymerase II complex component
SRB7, putative beta-1,3-glucanase, hypothetical protein,
TNP2-like protein, hypothetical protein, putative
phosphate/phosphoenolpyruvate translocator, putative
protein, hypothetical proteins, putative
galactosyltransferase family, hypothetical protein,
putative cytochrome P450 family, putative lipid transfer
protein, putative photoreceptor-interacting protein, and
hypothetical protein genes, complete cds; and hypothetical
protein gene, partial cds
Length = 202197
Score = 60.0 bits (30), Expect = 2e-007
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || ||| |||||||| |||||| || |
Sbjct: 171280 gcacagcatctgcctaggtgactgatagtgggctgtgtagtagttgaacacgcaaccata 171221
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 171220 ctggcagaagttccagctgtgg 171199
>gb|BZ347771.1|BZ347771 ho34d08.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho34d08 5', DNA sequence
Length = 508
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 317 agcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 373
||||||||||||||||||| ||||||| || |||||||||||||| |||| ||||
Sbjct: 94 agcttctcccagaggcacaccatctgcgccggcgactggtagtgcgcggtgaggtag 150
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagc 487
|||||||||| ||| ||||||| ||| ||||||||||||||
Sbjct: 233 ccacccacatccccctgctcacatcccccatcttgaacagc 273
>gb|CW125304.1|CW125304 104_505_11112259_148_34709_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112259, DNA
sequence
Length = 488
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaa 483
|||||||||||||||||||| |||||||| |||||
Sbjct: 481 acccacatgcccatgctcacatcctccattttgaa 447
>gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 633
Score = 52.0 bits (26), Expect = 5e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || || |||||||| |||||| || |
Sbjct: 231 gcacagcatctgcctaggtgactgatagtgggctgtatagtagttgaacacgcaaccata 172
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 171 ctggcagaagttccagctgtgg 150
>gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 618
Score = 52.0 bits (26), Expect = 5e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || || |||||||| |||||| || |
Sbjct: 217 gcacagcatctgcctaggtgactgatagtgggctgtatagtagttgaacacgcaaccata 158
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 157 ctggcagaagttccagctgtgg 136
>gb|BG050366.1|BG050366 FM1_53_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 366
Score = 52.0 bits (26), Expect = 5e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 331 gcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaa 390
||||||||||||||| || ||||| ||||| || || |||||||| |||||| || |
Sbjct: 96 gcacagcatctgcctaggtgactgatagtgggctgtatagtagttgaacacgcaaccata 37
Query: 391 ctggcagaacctccagctgtgg 412
||||||||| |||||||||||
Sbjct: 36 ctggcagaagttccagctgtgg 15
>gb|BZ349938.1|BZ349938 hr47e06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr47e06 5', DNA sequence
Length = 157
Score = 50.1 bits (25), Expect = 2e-004
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 493 ggagtggtttgtatgccgggatgctacgt-ctctcgcaatg 532
|||||| ||||||||||||||||||| || |||||||||||
Sbjct: 73 ggagtgatttgtatgccgggatgctatgtgctctcgcaatg 113
>gb|CW023926.1|CW023926 104_164_10434653_5_30003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10434653,
DNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 acaagcagccaatgtgaattc 21
|||||||||||||||||||||
Sbjct: 94 acaagcagccaatgtgaattc 74
>gb|CW151158.1|CW151158 104_551_11143790_116_36310_049 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11143790, DNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 acaagcagccaatgtgaattc 21
|||||||||||||||||||||
Sbjct: 65 acaagcagccaatgtgaattc 45
>gb|CW204837.1|CW204837 104_633_11186760_148_36927_096 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11186760, DNA sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 acaagcagccaatgtgaattc 21
|||||||||||||||||||||
Sbjct: 62 acaagcagccaatgtgaattc 42
>gb|BM327318.1|BM327318 PIC1_12_A06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.21
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgc 363
|||||||||||| || |||| ||| |||| |||| ||||||||||||
Sbjct: 321 cagcttctcccacagacacatcataagcctaggggtctggtagtgcgc 274
>gb|CF757196.1|CF757196 DSAF1_14_H08.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_14_H08_A011 3', mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.21
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgc 363
|||||||||||| || |||| ||| |||| |||| ||||||||||||
Sbjct: 235 cagcttctcccacagacacatcataagcctaggggtctggtagtgcgc 188
>gb|CF758925.1|CF758925 DSAF1_38_B12.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_B12_A011 3', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.21
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgc 363
|||||||||||| || |||| ||| |||| |||| ||||||||||||
Sbjct: 235 cagcttctcccacagacacatcataagcctaggggtctggtagtgcgc 188
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,106
Number of Sequences: 832831
Number of extensions: 110106
Number of successful extensions: 28341
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28289
Number of HSP's gapped (non-prelim): 51
length of query: 548
length of database: 491,359,669
effective HSP length: 19
effective length of query: 529
effective length of database: 475,535,880
effective search space: 251558480520
effective search space used: 251558480520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)