BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves... 747 0.0
gb|AW286991.2|AW286991 LG1_264_A11.b1_A002 Light Grown 1 (L... 555 e-156
gb|BG053797.1|BG053797 RHIZ2_9_H06.b1_A003 Rhizome2 (RHIZ2)... 547 e-154
gb|BF705218.1|BF705218 RHIZ2_2_B07.b1_A003 Rhizome2 (RHIZ2)... 434 e-120
gb|CW056516.1|CW056516 104_298_10517725_114_30156 Sorghum m... 297 6e-079
gb|CW381596.1|CW381596 fsbb001f063b09k0 Sorghum methylation... 297 6e-079
gb|CW228638.1|CW228638 104_668_11206487_148_37248_086 Sorgh... 289 2e-076
gb|CW028177.1|CW028177 104_255_10498940_114_30394 Sorghum m... 196 2e-048
gb|CW028178.1|CW028178 104_255_10498940_116_30393 Sorghum m... 196 2e-048
gb|CW381595.1|CW381595 fsbb001f063b09f0 Sorghum methylation... 196 2e-048
gb|CW232579.1|CW232579 104_685_11212893_116_37365_091 Sorgh... 192 3e-047
gb|CW061319.1|CW061319 104_305_10520338_115_30153 Sorghum m... 180 1e-043
gb|CW317912.1|CW317912 104_809_11473667_116_35861_034 Sorgh... 80 3e-013
gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum m... 72 7e-011
gb|CW064941.1|CW064941 104_311_10522854_115_30121 Sorghum m... 72 7e-011
gb|BZ366630.1|BZ366630 ic98d02.b1 WGS-SbicolorF (JM107 adap... 54 2e-005
gb|BZ366631.1|BZ366631 ic98d02.g1 WGS-SbicolorF (JM107 adap... 54 2e-005
gb|CL159132.1|CL159132 104_348_10804041_114_31379_249 Sorgh... 54 2e-005
gb|CL191088.1|CL191088 104_409_10906547_114_32490_036 Sorgh... 54 2e-005
gb|CW183114.1|CW183114 104_598_11164439_116_36663_082 Sorgh... 54 2e-005
gb|CW183115.1|CW183115 104_598_11164439_148_36664_082 Sorgh... 54 2e-005
gb|CW446710.1|CW446710 fsbb001f179h23f0 Sorghum methylation... 54 2e-005
gb|CW462573.1|CW462573 fsbb001f210m15k0 Sorghum methylation... 54 2e-005
gb|CW494208.1|CW494208 fsbb001f285g01k0 Sorghum methylation... 54 2e-005
gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sor... 54 2e-005
gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated... 54 2e-005
gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots ... 54 2e-005
gb|AW923084.1|AW923084 DG1_50_B12.b1_A002 Dark Grown 1 (DG1... 52 6e-005
gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1... 52 6e-005
gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1... 52 6e-005
gb|CW184632.1|CW184632 104_602_11165636_148_36691_080 Sorgh... 44 0.015
gb|CW417111.1|CW417111 fsbb001f117p10k0 Sorghum methylation... 44 0.015
gb|BZ334239.1|BZ334239 hx77h02.b1 WGS-SbicolorF (JM107 adap... 40 0.24
gb|CL162251.1|CL162251 104_354_10806279_116_31831_183 Sorgh... 40 0.24
gb|CL176949.1|CL176949 104_383_10893490_148_31772_322 Sorgh... 40 0.24
gb|CL190735.1|CL190735 104_409_10906286_114_32489_061 Sorgh... 40 0.24
gb|CW021488.1|CW021488 104_160_10431291_1_30004 Sorghum met... 40 0.24
gb|CW040932.1|CW040932 104_274_10506346_114_30470 Sorghum m... 40 0.24
gb|CW094791.1|CW094791 104_459_11000912_116_34276_024 Sorgh... 40 0.24
gb|CW142829.1|CW142829 104_534_11137078_116_34949_089 Sorgh... 40 0.24
gb|CW152249.1|CW152249 104_553_11144388_116_36325_042 Sorgh... 40 0.24
gb|CW152250.1|CW152250 104_553_11144388_148_36330_042 Sorgh... 40 0.24
gb|CW166447.1|CW166447 104_575_11153059_148_36762_076 Sorgh... 40 0.24
gb|CW206643.1|CW206643 104_635_11187700_116_36960_008 Sorgh... 40 0.24
gb|CW206644.1|CW206644 104_635_11187700_148_36964_008 Sorgh... 40 0.24
gb|CW213818.1|CW213818 104_645_11191765_148_37039_055 Sorgh... 40 0.24
gb|CW214153.1|CW214153 104_646_11193865_148_37054_015 Sorgh... 40 0.24
gb|CW237636.1|CW237636 104_694_11216288_148_37490_030 Sorgh... 40 0.24
gb|CW256179.1|CW256179 104_721_11226647_116_35138_094 Sorgh... 40 0.24
gb|CW271710.1|CW271710 104_744_11403142_116_36224_095 Sorgh... 40 0.24
gb|CW291100.1|CW291100 104_770_11413371_148_35760_006 Sorgh... 40 0.24
gb|CW336337.1|CW336337 104_835_11483535_116_36094_054 Sorgh... 40 0.24
gb|CW336338.1|CW336338 104_835_11483535_148_36098_054 Sorgh... 40 0.24
gb|CW343291.1|CW343291 104_845_11487342_116_36188_023 Sorgh... 40 0.24
gb|CW395255.1|CW395255 fsbb001f083d11f0 Sorghum methylation... 40 0.24
gb|CW406867.1|CW406867 fsbb001f100b11f0 Sorghum methylation... 40 0.24
gb|CW414742.1|CW414742 fsbb001f114i18k0 Sorghum methylation... 40 0.24
gb|CW461405.1|CW461405 fsbb001f209a22k0 Sorghum methylation... 40 0.24
gb|CW472652.1|CW472652 fsbb001f227l02k0 Sorghum methylation... 40 0.24
gb|CW497755.1|CW497755 fsbb001f290k17k0 Sorghum methylation... 40 0.24
gb|AW676968.1|AW676968 DG1_3_E06.b1_A002 Dark Grown 1 (DG1)... 40 0.24
gb|BG240100.1|BG240100 OV1_17_H08.b1_A002 Ovary 1 (OV1) Sor... 40 0.24
gb|BI351527.1|BI351527 IP1_72_A01.b1_A002 Immature pannicle... 40 0.24
gb|BM318478.1|BM318478 PI1_14_A10.b9_A002 Pathogen induced ... 40 0.24
gb|CF772670.1|CF772670 DSBF1_37_H12.g1_A010 Drought-stresse... 40 0.24
>gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 5', mRNA sequence
Length = 738
Score = 747 bits (377), Expect = 0.0
Identities = 456/481 (94%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 118 cgatggctcctgagaagctgaagctgttcatcggagtgctggccctgcagttcctcctgg 177
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 178 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgctca 237
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcgtgtacaggaacgtcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 297
Query: 311 agaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgt 370
|||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 298 agaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctgt 357
Query: 371 gtgggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacct 430
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 358 gtgggataacagcaaaccagggcttctacctcctgggtctgtatcacctgtcaccaacct 417
Query: 431 acgcctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctca 490
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 418 acgcctctgcgatacagaacaccgtccctgcaatcaccttcgtcatggccgctgtcctca 477
Query: 491 ggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtgg 550
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 478 ggcttgagcaggtggacctgagcaggaggcatggggtggccaaggtggtgggcacggtgg 537
Query: 551 tgagcatcggaggggccaccgtcataaccctgtacaagggccctgccgctgctccatcac 610
|||||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 538 tgagcatcggtggggcgaccgtgataaccctgtacaaggg-cctgccgctgttccatcac 596
Query: 611 a 611
|
Sbjct: 597 a 597
>gb|AW286991.2|AW286991 LG1_264_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 458
Score = 555 bits (280), Expect = e-156
Identities = 333/351 (94%)
Strand = Plus / Plus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 108 cgatggctcctgagaagctgaagctgttcatcggagtgctggccctgcagttcctcctgg 167
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 168 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgttca 227
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tcgtgtacaggaacgtcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 287
Query: 311 agaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgt 370
|||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 288 agaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctgt 347
Query: 371 gtgggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacct 430
|||||||||| || ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 348 gtgggataacagcaaaccagggcttctacctcctgngtctgtatcacctgtcaccaacct 407
Query: 431 acgcctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccg 481
|||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 408 acgcctctgcgatacagaacaccgtccctgcaatcaccttcgtcatggccg 458
>gb|BG053797.1|BG053797 RHIZ2_9_H06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 547 bits (276), Expect = e-154
Identities = 330/348 (94%)
Strand = Plus / Plus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 109 cgatggctcctgagaagctgaagctgttcatcggagtgctggccctgcagttcctcctgg 168
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 169 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgttca 228
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 229 tcgtgtacaggaacgtcatctccctcgccttgcttgctccgttcgcctacttcctcgaga 288
Query: 311 agaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgt 370
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 289 agaaagacaggccaccactcaccttctctttgctggtggagttttttctgctagcgctgt 348
Query: 371 gtgggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacct 430
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 gtgggataactgcaaaccagggcttctacctcctgggtctgtatcacctgtcaccaacct 408
Query: 431 acgcctctgcgatacagaacaccgtccccgcgatcaccttcgtcatgg 478
|||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 409 acgcctctgcgatacagaacaccggtcctgcaatcaccttcgtcatgg 456
>gb|BF705218.1|BF705218 RHIZ2_2_B07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 379
Score = 434 bits (219), Expect = e-120
Identities = 258/271 (95%)
Strand = Plus / Plus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 109 cgatggctcctgagaagctgaagctgttcatcggagtgctggccctgcagttcctcctgg 168
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 169 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgttca 228
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 229 tcgtgtacaggaacgtcatctccctcgccttgcttgctccgttcgcctacttcctcgaga 288
Query: 311 agaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgt 370
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 289 agaaagacaggccaccactcaccttctctttgctggtggagttttttctgctagcgctgt 348
Query: 371 gtgggataactgcgaaccagggcttctacct 401
||||||||||||| |||||||||||||||||
Sbjct: 349 gtgggataactgcaaaccagggcttctacct 379
>gb|CW056516.1|CW056516 104_298_10517725_114_30156 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517725, DNA
sequence
Length = 493
Score = 297 bits (150), Expect = 6e-079
Identities = 174/182 (95%)
Strand = Plus / Minus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 278 cgatggctcctgagaagctgaagctgttcatcggagtgctggccctgcagttcctcctgg 219
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 218 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgttca 159
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tcgtgtacaggaacgtcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 99
Query: 311 ag 312
||
Sbjct: 98 ag 97
>gb|CW381596.1|CW381596 fsbb001f063b09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063b09, DNA
sequence
Length = 702
Score = 297 bits (150), Expect = 6e-079
Identities = 174/182 (95%)
Strand = Plus / Plus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 316 cgatggctcctgagaagctgaagctgttcatcggagtgctggccctgcagttcctcctgg 375
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 376 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgttca 435
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcgtgtacaggaacgtcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 495
Query: 311 ag 312
||
Sbjct: 496 ag 497
Score = 95.6 bits (48), Expect = 5e-018
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 622 gaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctgtg 681
Query: 372 tggg 375
||||
Sbjct: 682 tggg 685
>gb|CW228638.1|CW228638 104_668_11206487_148_37248_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206487, DNA
sequence
Length = 570
Score = 289 bits (146), Expect = 2e-076
Identities = 173/182 (95%)
Strand = Plus / Minus
Query: 131 cgatggctcctgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctgg 190
|||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||
Sbjct: 546 cgatggctcctgagaagctgaagctgttcatcggagtgctggccgtgcagttcctcctgg 487
Query: 191 cagggttccacatcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 486 cagggttccacattgtctccagggcggcgctcaacatgggcgtcagcaagatcgtgttca 427
Query: 251 tggtgtacaggaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 310
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcgtgtacaggaacgtcatctccctcgccttgctcgctccgttcgcctacttcctcgaga 367
Query: 311 ag 312
||
Sbjct: 366 ag 365
Score = 95.6 bits (48), Expect = 5e-018
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 240 gaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctgtg 181
Query: 372 tggg 375
||||
Sbjct: 180 tggg 177
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaa 427
||||||| || |||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 69 ggataacagcaaaccagggcttctacctcttgggtctgtatcacctgtcaccaa 16
>gb|CW028177.1|CW028177 104_255_10498940_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498940, DNA
sequence
Length = 539
Score = 196 bits (99), Expect = 2e-048
Identities = 114/119 (95%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 ggataacagcaaaccagggcttctacctcctgggtctgtatcacctgtcaccaacctacg 322
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 323 cctctgcgatacagaacaccgtccctgcaatcaccttcgtcatggccgctgtcctcagg 381
Score = 99.6 bits (50), Expect = 3e-019
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacg 546
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 482 caggcttgagcaggtggacctgagcaggaggcatggggtggccaaggtggtgggcacg 539
Score = 99.6 bits (50), Expect = 3e-019
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 310 aagaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctg 369
||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 90 aagaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctg 149
Query: 370 tgtggg 375
||||||
Sbjct: 150 tgtggg 155
>gb|CW028178.1|CW028178 104_255_10498940_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498940, DNA
sequence
Length = 539
Score = 196 bits (99), Expect = 2e-048
Identities = 114/119 (95%)
Strand = Plus / Minus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 275 ggataacagcaaaccagggcttctacctcctgggtctgtatcacctgtcaccaacctacg 216
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 215 cctctgcgatacagaacaccgtccctgcaatcaccttcgtcatggccgctgtcctcagg 157
Score = 95.6 bits (48), Expect = 5e-018
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 446 gaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctgtg 387
Query: 372 tggg 375
||||
Sbjct: 386 tggg 383
Score = 95.6 bits (48), Expect = 5e-018
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggca 544
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 56 caggcttgagcaggtggacctgagcaggaggcatggggtggccaaggtggtgggca 1
>gb|CW381595.1|CW381595 fsbb001f063b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063b09, DNA
sequence
Length = 672
Score = 196 bits (99), Expect = 2e-048
Identities = 114/119 (95%)
Strand = Plus / Minus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 486 ggataacagcaaaccagggcttctacctcctgggtctgtatcacctgtcaccaacctacg 427
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 426 cctctgcgatacagaacaccgtccctgcaatcaccttcgtcatggccgctgtcctcagg 368
Score = 180 bits (91), Expect = 1e-043
Identities = 116/123 (94%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 caggcttgagcaggtggacctgagcaggaggcatggggtggccaaggtggtgggcacggt 208
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggccctgccgctgctccatc 608
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||
Sbjct: 207 ggtgagcatcggtggggcgaccgtgataaccctgtacaaggg-cctgccgctgttccatc 149
Query: 609 aca 611
|||
Sbjct: 148 aca 146
Score = 95.6 bits (48), Expect = 5e-018
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 657 gaaagacagaccaccactcaccttctctttgctggtggagttttttctgctagcgctgtg 598
Query: 372 tggg 375
||||
Sbjct: 597 tggg 594
>gb|CW232579.1|CW232579 104_685_11212893_116_37365_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212893, DNA
sequence
Length = 685
Score = 192 bits (97), Expect = 3e-047
Identities = 112/117 (95%)
Strand = Plus / Plus
Query: 376 ataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcc 435
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ataacagcaaaccagggcttctacctcctgggtctgtatcacctgtcaccaacctacgcc 60
Query: 436 tctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 61 tctgcgatacagaacaccgtccctgcaatcaccttcgtcatggccgctgtcctcagg 117
Score = 180 bits (91), Expect = 1e-043
Identities = 116/123 (94%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 218 caggcttgagcaggtggacctgagcaggaggcatggggtggccaaggtggtgggcacggt 277
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggccctgccgctgctccatc 608
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||
Sbjct: 278 ggtgagcatcggtggggcgaccgtgataaccctgtacaaggg-cctgccgctgttccatc 336
Query: 609 aca 611
|||
Sbjct: 337 aca 339
>gb|CW061319.1|CW061319 104_305_10520338_115_30153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520338, DNA
sequence
Length = 484
Score = 180 bits (91), Expect = 1e-043
Identities = 116/123 (94%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6 caggcttgagcaggtggacctgagcaggaggcatggggtggccaaggtggtgggcacggt 65
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggccctgccgctgctccatc 608
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||
Sbjct: 66 ggtgagcatcggtggggcgaccgtgataaccctgtacaaggg-cctgccgctgttccatc 124
Query: 609 aca 611
|||
Sbjct: 125 aca 127
>gb|CW317912.1|CW317912 104_809_11473667_116_35861_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473667, DNA
sequence
Length = 676
Score = 79.8 bits (40), Expect = 3e-013
Identities = 91/108 (84%)
Strand = Plus / Plus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||| ||||| || |||| ||| || ||| | ||||||||| | ||
Sbjct: 543 ggcgctcaacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctcatcgcgct 602
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggcc 323
| | | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 603 ctgcctcctcgccccgttcgcctacttcctcgagaagaaagacaggcc 650
>gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505533, DNA
sequence
Length = 698
Score = 71.9 bits (36), Expect = 7e-011
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||| ||||| || |||| ||| || ||| | ||||||||| | ||
Sbjct: 338 ggcgctcaacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctcatcgcgct 279
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggcc 323
| | | ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 278 ctgcctcctcgccccgttcgcctacttcctcgagaagaaggacaggcc 231
Score = 60.0 bits (30), Expect = 3e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 350 agttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcctggg 407
|||||||||| || |||||||| ||||| || || ||||||||||||||||| |||||
Sbjct: 204 agttcttcctcctcgcgctgtgcgggatcaccgccaaccagggcttctacctgctggg 147
>gb|CW064941.1|CW064941 104_311_10522854_115_30121 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522854, DNA
sequence
Length = 623
Score = 71.9 bits (36), Expect = 7e-011
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||| ||||| || |||| ||| || ||| | ||||||||| | ||
Sbjct: 122 ggcgctcaacatgggcgtcagcaagctcgtcttccccgtctaccgcaacctcatcgcgct 63
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggcc 323
| | | ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 62 ctgcctcctcgccccgttcgcctacttcctcgagaagaaggacaggcc 15
>gb|BZ366630.1|BZ366630 ic98d02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic98d02 5', DNA sequence
Length = 441
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 328 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 282
>gb|BZ366631.1|BZ366631 ic98d02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic98d02 5', DNA sequence
Length = 488
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 153 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 199
>gb|CL159132.1|CL159132 104_348_10804041_114_31379_249 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804041, DNA
sequence
Length = 561
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 454 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 408
>gb|CL191088.1|CL191088 104_409_10906547_114_32490_036 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906547, DNA
sequence
Length = 730
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 207 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 161
>gb|CW183114.1|CW183114 104_598_11164439_116_36663_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164439, DNA
sequence
Length = 782
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 487 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 441
>gb|CW183115.1|CW183115 104_598_11164439_148_36664_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164439, DNA
sequence
Length = 707
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 500 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 546
>gb|CW446710.1|CW446710 fsbb001f179h23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179h23, DNA
sequence
Length = 704
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 401 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 355
>gb|CW462573.1|CW462573 fsbb001f210m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f210m15, DNA
sequence
Length = 703
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 344 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 298
>gb|CW494208.1|CW494208 fsbb001f285g01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285g01, DNA
sequence
Length = 698
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 247 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 293
>gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 499
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 162 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 208
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 295 gcctacttcctcgagaagaaagacaggcc 323
||||||||||||||||||||||| |||||
Sbjct: 261 gcctacttcctcgagaagaaagataggcc 289
>gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_47_F04_A002 5', mRNA sequence
Length = 592
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 178 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 224
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 295 gcctacttcctcgagaagaaagacaggcc 323
||||||||||||||||||||||| |||||
Sbjct: 277 gcctacttcctcgagaagaaagataggcc 305
>gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_E06_A002 5', mRNA sequence
Length = 794
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 196 ttccacatcgtctccagggcggcgctcaacatgggcatcagcgagat 242
|||||| |||| ||||||||||||||| |||||||| ||||| ||||
Sbjct: 172 ttccacgtcgtgtccagggcggcgctcgacatgggcgtcagcaagat 218
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 295 gcctacttcctcgagaagaaagacaggcc 323
||||||||||||||||||||||| |||||
Sbjct: 271 gcctacttcctcgagaagaaagataggcc 299
>gb|AW923084.1|AW923084 DG1_50_B12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 52.0 bits (26), Expect = 6e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||||||||| || |||| ||| || ||| | ||| ||||| | ||
Sbjct: 279 ggcgctcaacatgggcatcagcaagctcgtcttccccgtctaccgcaacatcatcgcgct 338
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggccgc 325
| | | |||| || ||||||||||| ||||||||||| ||||||||||
Sbjct: 339 ctgcctcctcgtccccttcgcctactttctcgagaagaaggacaggccgc 388
>gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 52.0 bits (26), Expect = 6e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||||||||| || |||| ||| || ||| | ||| ||||| | ||
Sbjct: 233 ggcgctcaacatgggcatcagcaagctcgtcttccccgtctaccgcaacatcatcgcgct 292
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggccgc 325
| | | |||| || ||||||||||| ||||||||||| ||||||||||
Sbjct: 293 ctgcctcctcgtccccttcgcctactttctcgagaagaaggacaggccgc 342
>gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 52.0 bits (26), Expect = 6e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||||||||| || |||| ||| || ||| | ||| ||||| | ||
Sbjct: 130 ggcgctcaacatgggcatcagcaagctcgtcttccccgtctaccgcaacatcatcgcgct 189
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggccgc 325
| | | |||| || ||||||||||| ||||||||||| ||||||||||
Sbjct: 190 ctgcctcctcgtccccttcgcctactttctcgagaagaaggacaggccgc 239
>gb|CW184632.1|CW184632 104_602_11165636_148_36691_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165636, DNA
sequence
Length = 725
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 216 ggcgctcaacatgggcatcagc 237
||||||||||||||||||||||
Sbjct: 257 ggcgctcaacatgggcatcagc 236
>gb|CW417111.1|CW417111 fsbb001f117p10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117p10, DNA
sequence
Length = 820
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 216 ggcgctcaacatgggcatcagc 237
||||||||||||||||||||||
Sbjct: 476 ggcgctcaacatgggcatcagc 497
>gb|BZ334239.1|BZ334239 hx77h02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx77h02 5', DNA sequence
Length = 435
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 gtgagctagctagctagcag 96
||||||||||||||||||||
Sbjct: 217 gtgagctagctagctagcag 198
>gb|CL162251.1|CL162251 104_354_10806279_116_31831_183 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10806279, DNA sequence
Length = 198
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 gagctactagctagctagca 37
||||||||||||||||||||
Sbjct: 62 gagctactagctagctagca 81
>gb|CL176949.1|CL176949 104_383_10893490_148_31772_322 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10893490, DNA sequence
Length = 184
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 gagctactagctagctagca 37
||||||||||||||||||||
Sbjct: 55 gagctactagctagctagca 74
>gb|CL190735.1|CL190735 104_409_10906286_114_32489_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906286, DNA
sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 77 gtgagctagctagctagcagctag 100
||||||||||||||||| ||||||
Sbjct: 467 gtgagctagctagctagtagctag 444
>gb|CW021488.1|CW021488 104_160_10431291_1_30004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431291, DNA
sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 agctagctagctagcagcta 99
||||||||||||||||||||
Sbjct: 355 agctagctagctagcagcta 374
>gb|CW040932.1|CW040932 104_274_10506346_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506346,
DNA sequence
Length = 252
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gtgagctagctagctagcag 96
||||||||||||||||||||
Sbjct: 70 gtgagctagctagctagcag 89
>gb|CW094791.1|CW094791 104_459_11000912_116_34276_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000912, DNA
sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gtgagctagctagctagcag 96
||||||||||||||||||||
Sbjct: 120 gtgagctagctagctagcag 139
>gb|CW142829.1|CW142829 104_534_11137078_116_34949_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137078, DNA
sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 527 tggccaaggtggtgggcacg 546
||||||||||||||||||||
Sbjct: 186 tggccaaggtggtgggcacg 205
>gb|CW152249.1|CW152249 104_553_11144388_116_36325_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144388, DNA
sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 aacgagagctactagctagctagc 36
||||||||||| ||||||||||||
Sbjct: 263 aacgagagctagtagctagctagc 286
>gb|CW152250.1|CW152250 104_553_11144388_148_36330_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144388, DNA
sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 13 aacgagagctactagctagctagc 36
||||||||||| ||||||||||||
Sbjct: 627 aacgagagctagtagctagctagc 604
>gb|CW166447.1|CW166447 104_575_11153059_148_36762_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153059, DNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 460 gcgatcaccttcgtcatggc 479
||||||||||||||||||||
Sbjct: 143 gcgatcaccttcgtcatggc 124
>gb|CW206643.1|CW206643 104_635_11187700_116_36960_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187700, DNA
sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 gtgagctagctagctagcag 96
||||||||||||||||||||
Sbjct: 435 gtgagctagctagctagcag 416
>gb|CW206644.1|CW206644 104_635_11187700_148_36964_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187700, DNA
sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gtgagctagctagctagcag 96
||||||||||||||||||||
Sbjct: 501 gtgagctagctagctagcag 520
>gb|CW213818.1|CW213818 104_645_11191765_148_37039_055 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11191765, DNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctactagctagctagcagca 40
||||||||||||||||||||
Sbjct: 42 ctactagctagctagcagca 61
>gb|CW214153.1|CW214153 104_646_11193865_148_37054_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11193865, DNA
sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 gtgagctagctagctagcagctag 100
||||||||||||||||| ||||||
Sbjct: 137 gtgagctagctagctagtagctag 160
>gb|CW237636.1|CW237636 104_694_11216288_148_37490_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216288, DNA
sequence
Length = 719
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 gtgagctagctagctagcag 96
||||||||||||||||||||
Sbjct: 194 gtgagctagctagctagcag 175
>gb|CW256179.1|CW256179 104_721_11226647_116_35138_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226647, DNA
sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ctactagctagctagcagca 40
||||||||||||||||||||
Sbjct: 294 ctactagctagctagcagca 275
>gb|CW271710.1|CW271710 104_744_11403142_116_36224_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403142, DNA
sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctactagctagctagcagca 40
||||||||||||||||||||
Sbjct: 271 ctactagctagctagcagca 290
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,729
Number of Sequences: 832831
Number of extensions: 245729
Number of successful extensions: 91168
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90942
Number of HSP's gapped (non-prelim): 223
length of query: 625
length of database: 491,359,669
effective HSP length: 19
effective length of query: 606
effective length of database: 475,535,880
effective search space: 288174743280
effective search space used: 288174743280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)