BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063O07F020916.3.1
(657 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD231657.1|CD231657 SS1_22_F07.g1_A012 Salt-stressed see... 761 0.0
gb|BE918038.1|BE918038 OV1_1_B06.b1_A002 Ovary 1 (OV1) Sorg... 729 0.0
gb|BE918622.1|BE918622 OV1_4_B08.b1_A002 Ovary 1 (OV1) Sorg... 729 0.0
gb|CN149563.1|CN149563 WOUND1_63_C01.g1_A002 Wounded leaves... 726 0.0
gb|AW563502.1|AW563502 LG1_239_C12.b1_A002 Light Grown 1 (L... 722 0.0
gb|CF432866.1|CF432866 NIT1_19_F02.g1_A002 Nitrogen-deficie... 720 0.0
gb|BF586966.1|BF586966 FM1_31_F08.b1_A003 Floral-Induced Me... 698 0.0
gb|CD230671.1|CD230671 SS1_47_B10.g1_A012 Salt-stressed see... 650 0.0
gb|CD211537.1|CD211537 HS1_60_B08.g1_A012 Heat-shocked seed... 646 0.0
gb|CD213380.1|CD213380 HS1_40_G11.g1_A012 Heat-shocked seed... 642 0.0
gb|CN152109.1|CN152109 WOUND1_79_G05.g1_A002 Wounded leaves... 543 e-153
gb|BM323498.1|BM323498 PIC1_20_A06.b1_A002 Pathogen-infecte... 529 e-148
gb|BM323676.1|BM323676 PIC1_22_A06.b1_A002 Pathogen-infecte... 529 e-148
gb|CD213969.1|CD213969 HS1_69_D05.g1_A012 Heat-shocked seed... 484 e-135
gb|AW924003.1|AW924003 WS1_32_E04.b1_A002 Water-stressed 1 ... 478 e-133
gb|BG054414.1|BG054414 OV2_4_B06.b1_A002 Ovary 2 (OV2) Sorg... 379 e-103
gb|CD226276.1|CD226276 CCC1_44_B01.g1_A007 Callus culture/c... 246 2e-063
gb|BE356710.1|BE356710 DG1_12_E11.b1_A002 Dark Grown 1 (DG1... 113 2e-023
gb|CW118579.1|CW118579 104_495_11108286_148_34631_029 Sorgh... 94 2e-017
gb|CW126270.1|CW126270 104_506_11112805_148_34726_049 Sorgh... 94 2e-017
gb|CW186193.1|CW186193 104_604_11166438_148_36707_029 Sorgh... 94 2e-017
gb|CW188587.1|CW188587 104_608_11173120_148_36731_056 Sorgh... 94 2e-017
gb|CW186192.1|CW186192 104_604_11166438_116_36708_029 Sorgh... 62 7e-008
gb|BI643699.1|BI643699 EM1_19_H12.b1_A002 Embryo 1 (EM1) So... 58 1e-006
gb|BG355555.1|BG355555 EM1_17_H01.b1_A002 Embryo 1 (EM1) So... 42 0.063
>gb|CD231657.1|CD231657 SS1_22_F07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F07_A012 5', mRNA sequence
Length = 646
Score = 761 bits (384), Expect = 0.0
Identities = 469/496 (94%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 144 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 203
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| |||||||||||||||| |||| |||| ||| ||||||
Sbjct: 204 cttcccggctggagaatcctccatctgtttcggtaactatttggaacaatttacgtggag 263
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 323
Query: 320 ggaggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatct 379
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ggaggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatct 383
Query: 380 gcaagtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatg 439
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 gcaagtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatg 443
Query: 440 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 503
Query: 500 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 563
Query: 560 ggagcagttctggaggaggaatcagggattattttacataaccctatggtgaaacttttc 619
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 564 ggagcagttctggaggaggaatctgggattattttacataaacctatggtgaatcttttc 623
Query: 620 agagaacaggtgattg 635
||||| ||||||||||
Sbjct: 624 agagagcaggtgattg 639
Score = 63.9 bits (32), Expect = 2e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 68 ctccctacgcatcctctccccctcgggcgctttccccacccaatccgaccgccggg 123
|||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 43 ctccctacgcctcctcgccctctcgc-cgctttccccacccaatccgaccgccggg 97
>gb|BE918038.1|BE918038 OV1_1_B06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 629
Score = 729 bits (368), Expect = 0.0
Identities = 454/480 (94%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 179 ggcgaatcagcggggatcgggact-cccggctgaagaatcctctatctgtttcggtaact 237
|||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct: 8 ggcgaatcggcggggatcgggacttcccggctggagaatcctccatctgtttcggtaact 67
Query: 238 gtttgcaacagtttgtgtggagattgcataccatcaccttccctgaagtgaaaaatatat 297
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 atttggaacaatttacgtggagattgcataccatcaccttccctgaagtgaaaaatatat 127
Query: 298 gggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaaaacgcgc 357
||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct: 128 gggctgatcgtggcatttcatgggaggttttgaagatgatgaaccaccctcaaaacgcgc 187
Query: 358 aagaacatcctcagtagaatctgcaagtttaccagactgtttctcgttttcgaaattttc 417
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 188 aagagcatcctcagtagaatctgcaagtttaccagattatttctcgttttcgaaatccgt 247
Query: 418 caatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggt 307
Query: 478 tggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgta 367
Query: 538 tagtcttggatatgaaaaaagtggagcagttctggaggaggaatcagggattattttaca 597
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 tagtcttggatatgaaaaaagtggagcagttctggaggaggaatctgggattattttaca 427
Query: 598 taaccctatggtgaaacttttcagagaacaggtgattggatggaaattgggataatgcgg 657
||| ||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 428 taaacctatggtgaatcttttcagagagcaggtgatt-gatgggaattgggataatgcgg 486
>gb|BE918622.1|BE918622 OV1_4_B08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 602
Score = 729 bits (368), Expect = 0.0
Identities = 454/480 (94%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 179 ggcgaatcagcggggatcgggact-cccggctgaagaatcctctatctgtttcggtaact 237
|||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct: 8 ggcgaatcggcggggatcgggacttcccggctggagaatcctccatctgtttcggtaact 67
Query: 238 gtttgcaacagtttgtgtggagattgcataccatcaccttccctgaagtgaaaaatatat 297
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 atttggaacaatttacgtggagattgcataccatcaccttccctgaagtgaaaaatatat 127
Query: 298 gggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaaaacgcgc 357
||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct: 128 gggctgatcgtggcatttcatgggaggttttgaagatgatgaaccaccctcaaaacgcgc 187
Query: 358 aagaacatcctcagtagaatctgcaagtttaccagactgtttctcgttttcgaaattttc 417
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 188 aagagcatcctcagtagaatctgcaagtttaccagattatttctcgttttcgaaatccgt 247
Query: 418 caatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 caatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggt 307
Query: 478 tggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgta 367
Query: 538 tagtcttggatatgaaaaaagtggagcagttctggaggaggaatcagggattattttaca 597
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 tagtcttggatatgaaaaaagtggagcagttctggaggaggaatctgggattattttaca 427
Query: 598 taaccctatggtgaaacttttcagagaacaggtgattggatggaaattgggataatgcgg 657
||| ||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 428 taaacctatggtgaatcttttcagagagcaggtgatt-gatgggaattgggataatgcgg 486
>gb|CN149563.1|CN149563 WOUND1_63_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_C01_A002 5', mRNA sequence
Length = 569
Score = 726 bits (366), Expect = 0.0
Identities = 482/518 (93%), Gaps = 2/518 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 43 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 102
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| |||||||||||||||| |||| |||| ||| ||||||
Sbjct: 103 cttcccggctggagaatcctccatctgtttcggtaactatttggaacaatttacgtggag 162
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 163 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 222
Query: 320 ggaggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatct 379
| ||||| ||||||||| || ||||| |||| |||||||||| |||||||||||||||||
Sbjct: 223 gcaggttttgaagatgatgaaccaccatcaagacgcgcaagagcatcctcagtagaatct 282
Query: 380 gcaagtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatg 439
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 gcaagtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatg 342
Query: 440 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 402
Query: 500 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 559
|| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 403 aacgaggaatttgttaggataatcaccagaactctgtatattcttggatatgaaaaaagt 462
Query: 560 ggagcagttctggaggaggaatcagggattattttacataaccctatggtgaaacttttc 619
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 463 ggagcagttctggaggaggaatctgggattattttacataaacctatggtgaatcttttc 522
Query: 620 agagaacaggtgattggatggaaattgggataatgcgg 657
||||| || |||||| ||||| ||||||||||||||||
Sbjct: 523 agagagcacgtgatt-gatgggaattgggataatgcgg 559
>gb|AW563502.1|AW563502 LG1_239_C12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 596
Score = 722 bits (364), Expect = 0.0
Identities = 453/480 (94%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 179 ggcgaatcagcggggatcgggact-cccggctgaagaatcctctatctgtttcggtaact 237
|||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct: 1 ggcgaatcggcggggatcgggacttcccggctggagaatcctccatctgtttcggtaact 60
Query: 238 gtttgcaacagtttgtgtggagattgcataccatcaccttccctgaagtgaaaaatatat 297
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttggaacaatttacgtggagattgcataccatcaccttccctgaagtgaaaaatatat 120
Query: 298 gggctgatcttggcatttcatgggaggttctgaagatgacgagccaccctcaaaacgcgc 357
||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct: 121 gggctgatcgtggcatttcatgggaggttttgaagatgatgaaccaccctcaaaacgcgc 180
Query: 358 aagaacatcctcagtagaatctgcaagtttaccagactgtttctcgttttcgaaattttc 417
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 181 aagagcatcctcagtagaatctgcaagtttaccagattatttctcgttttcgaaatccgt 240
Query: 418 caatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caatcctttgggaagtacaatggctagacctttgccttcccaagggaaagaagttatggt 300
Query: 478 tggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggttccaagggtgttattaagaaggaggaatttgttaggataatcaccaaaactctgta 360
Query: 538 tagtcttggatatgaaaaaagtggagcagttctggaggaggaatcagggattattttaca 597
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 361 tagtcttggatatgaaaaaagtggagcagttctggaggaggaatctgggattattttaca 420
Query: 598 taaccctatggtgaaacttttcagagaacaggtgattggatggaaattgggataatgcgg 657
||| ||||||||||| ||||||||||| || |||||| ||||| ||||||||||||||||
Sbjct: 421 taaacctatggtgaatcttttcagagagcacgtgatt-gatgggaattgggataatgcgg 479
>gb|CF432866.1|CF432866 NIT1_19_F02.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_19_F02_A002 5', mRNA sequence
Length = 636
Score = 720 bits (363), Expect = 0.0
Identities = 442/467 (94%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 170 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 229
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| |||||||||||||||| |||| |||| ||| ||||||
Sbjct: 230 cttcccggctggagaatcctccatctgtttcggtaactatttggaacaatttacgtggag 289
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 290 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 349
Query: 320 ggaggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatct 379
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 350 ggaggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatct 409
Query: 380 gcaagtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatg 439
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 410 gcaagtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatg 469
Query: 440 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 529
Query: 500 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 589
Query: 560 ggagcagttctggaggaggaatcagggattattttacataaccctat 606
||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 590 ggagcagttctggaggaggaatctgggattattttacataaacctat 636
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 95 cgctttccccacccaatccgaccgccggg 123
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 35 tcccccaagccaaacaccacca 56
||||||||||||||||||||||
Sbjct: 30 tcccccaagccaaacaccacca 51
>gb|BF586966.1|BF586966 FM1_31_F08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 575
Score = 698 bits (352), Expect = 0.0
Identities = 425/448 (94%), Gaps = 1/448 (0%)
Strand = Plus / Plus
Query: 210 gaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggagattgcatacc 269
||||||||||| |||||||||||||||| |||| |||| ||| ||||||||||||||||
Sbjct: 9 gaagaatcctccatctgtttcggtaactatttggaacaatttacgtggagattgcatacc 68
Query: 270 atcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctg 329
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 69 atcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatgggaggttttg 128
Query: 330 aagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgcaagtttac 389
||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 129 aagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgcaagtttac 188
Query: 390 cagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggctagacctt 449
|||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 189 cagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggctagacctt 248
Query: 450 tgccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaat 308
Query: 510 ttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagcagttc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagcagttc 368
Query: 570 tggaggaggaatcagggattattttacataaccctatggtgaaacttttcagagaacagg 629
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 369 tggaggaggaatctgggattattttacataaacctatggtgaatcttttcagagagcagg 428
Query: 630 tgattggatggaaattgggataatgcgg 657
||||| ||||| ||||||||||||||||
Sbjct: 429 tgatt-gatgggaattgggataatgcgg 455
>gb|CD230671.1|CD230671 SS1_47_B10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_47_B10_A012 5', mRNA sequence
Length = 555
Score = 650 bits (328), Expect = 0.0
Identities = 401/424 (94%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 132 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 191
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| |||||||||||||||| |||| |||| ||| ||||||
Sbjct: 192 cttcccggctggagaatcctccatctgtttcggtaactatttggaacaatttacgtggag 251
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 252 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 311
Query: 320 ggaggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatct 379
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 312 ggaggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatct 371
Query: 380 gcaagtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatg 439
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 372 gcaagtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatg 431
Query: 440 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctagacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaag 491
Query: 500 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaggaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagt 551
Query: 560 ggag 563
||||
Sbjct: 552 ggag 555
Score = 63.9 bits (32), Expect = 2e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 68 ctccctacgcatcctctccccctcgggcgctttccccacccaatccgaccgccggg 123
|||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 31 ctccctacgcctcctcgccctctcgc-cgctttccccacccaatccgaccgccggg 85
>gb|CD211537.1|CD211537 HS1_60_B08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_60_B08_A012 5', mRNA sequence
Length = 736
Score = 646 bits (326), Expect = 0.0
Identities = 386/406 (95%)
Strand = Plus / Plus
Query: 212 agaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggagattgcataccat 271
||||||||| |||||||||||||||| |||| |||| ||| ||||||||||||||||||
Sbjct: 331 agaatcctccatctgtttcggtaactatttggaacaatttacgtggagattgcataccat 390
Query: 272 caccttccctgaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaa 331
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 391 caccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatgggaggttttgaa 450
Query: 332 gatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgcaagtttacca 391
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 451 gatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgcaagtttacca 510
Query: 392 gactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggctagacctttg 451
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 511 gattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggctagacctttg 570
Query: 452 ccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaattt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaattt 630
Query: 512 gttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagcagttctg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagcagttctg 690
Query: 572 gaggaggaatcagggattattttacataaccctatggtgaaacttt 617
||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 691 gaggaggaatctgggattattttacataaacctatggtgaatcttt 736
Score = 93.7 bits (47), Expect = 2e-017
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 148 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 207
Query: 201 c-tcccggctg 210
| |||||||||
Sbjct: 208 cttcccggctg 218
Score = 63.9 bits (32), Expect = 2e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 68 ctccctacgcatcctctccccctcgggcgctttccccacccaatccgaccgccggg 123
|||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 47 ctccctacgcctcctcgccctctcgc-cgctttccccacccaatccgaccgccggg 101
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 37 ccccaagccaaacaccacca 56
||||||||||||||||||||
Sbjct: 2 ccccaagccaaacaccacca 21
>gb|CD213380.1|CD213380 HS1_40_G11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_40_G11_A012 5', mRNA sequence
Length = 430
Score = 642 bits (324), Expect = 0.0
Identities = 387/408 (94%)
Strand = Plus / Plus
Query: 212 agaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggagattgcataccat 271
||||| ||| |||||||||||||||| |||| |||| ||| ||||||||||||||||||
Sbjct: 23 agaattctccatctgtttcggtaactatttggaacaatttacgtggagattgcataccat 82
Query: 272 caccttccctgaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaa 331
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 83 caccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatgggaggttttgaa 142
Query: 332 gatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgcaagtttacca 391
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 143 gatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgcaagtttacca 202
Query: 392 gactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggctagacctttg 451
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 203 gattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggctagacctttg 262
Query: 452 ccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaattt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaattt 322
Query: 512 gttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagcagttctg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtggagcagttctg 382
Query: 572 gaggaggaatcagggattattttacataaccctatggtgaaacttttc 619
||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 383 gaggaggaatctgggattattttacataaacctatggtgaatcttttc 430
>gb|CN152109.1|CN152109 WOUND1_79_G05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_79_G05_A002 5', mRNA sequence
Length = 581
Score = 543 bits (274), Expect = e-153
Identities = 331/350 (94%)
Strand = Plus / Plus
Query: 212 agaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggagattgcataccat 271
||||||||| |||||||||||||||| |||| |||| ||| ||||||||||||||||||
Sbjct: 232 agaatcctccatctgtttcggtaactatttggaacaatttacgtggagattgcataccat 291
Query: 272 caccttccctgaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaa 331
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||
Sbjct: 292 caccttccctgaagtgaaaagtatatgggctgatcgtggcatttcatgggaggttttgaa 351
Query: 332 gatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgcaagtttacca 391
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 352 gatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgcaagtttacca 411
Query: 392 gactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggctagacctttg 451
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 412 gattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggctagacctttg 471
Query: 452 ccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaattt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccttcccaagggaaagaagttatggttggttccaagggtgttattaagaaggaggaattt 531
Query: 512 gttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtgg 561
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 532 gttaggataatcaccaacactctgtatagtcttggatatgaaaaaagtgg 581
Score = 91.7 bits (46), Expect = 8e-017
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 123 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 182
Query: 201 ct 202
||
Sbjct: 183 ct 184
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 48 cgctttccccacccaatccgaccgccggg 76
>gb|BM323498.1|BM323498 PIC1_20_A06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 599
Score = 529 bits (267), Expect = e-148
Identities = 319/335 (95%), Gaps = 1/335 (0%)
Strand = Plus / Plus
Query: 323 ggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgca 382
|||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgca 67
Query: 383 agtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggct 442
||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 68 agtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggct 127
Query: 443 agacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaagaag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaagaag 187
Query: 503 gaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtgga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtgga 247
Query: 563 gcagttctggaggaggaatcagggattattttacataaccctatggtgaaacttttcaga 622
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 248 gcagttctggaggaggaatctgggattattttacataaacctatggtgaatcttttcaga 307
Query: 623 gaacaggtgattggatggaaattgggataatgcgg 657
|| ||||||||| ||||| ||||||||||||||||
Sbjct: 308 gagcaggtgatt-gatgggaattgggataatgcgg 341
>gb|BM323676.1|BM323676 PIC1_22_A06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 529 bits (267), Expect = e-148
Identities = 319/335 (95%), Gaps = 1/335 (0%)
Strand = Plus / Plus
Query: 323 ggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgca 382
|||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgca 67
Query: 383 agtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggct 442
||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 68 agtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggct 127
Query: 443 agacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaagaag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agacctttgccttcccaagggaaagaagttatggttggttccaagggtgttattaagaag 187
Query: 503 gaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtgga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaggaatttgttaggataatcaccaaaactctgtatagtcttggatatgaaaaaagtgga 247
Query: 563 gcagttctggaggaggaatcagggattattttacataaccctatggtgaaacttttcaga 622
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 248 gcagttctggaggaggaatctgggattattttacataaacctatggtgaatcttttcaga 307
Query: 623 gaacaggtgattggatggaaattgggataatgcgg 657
|| ||||||||| ||||| ||||||||||||||||
Sbjct: 308 gagcaggtgatt-gatgggaattgggataatgcgg 341
>gb|CD213969.1|CD213969 HS1_69_D05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_69_D05_A012 5', mRNA sequence
Length = 572
Score = 484 bits (244), Expect = e-135
Identities = 317/340 (93%), Gaps = 1/340 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 233 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 292
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| |||||||||||||||| |||| |||| ||| ||||||
Sbjct: 293 cttcccggctggagaatcctccatctgtttcggtaactatttggaacaatttacgtggag 352
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 353 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 412
Query: 320 ggaggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatct 379
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 413 ggaggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatct 472
Query: 380 gcaagtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatg 439
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 473 gcaagtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatg 532
Query: 440 gctagacctttgccttcccaagggaaagaagttatggttg 479
||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gctagacctttgccttcccaagggaaagaagttatggttg 572
Score = 63.9 bits (32), Expect = 2e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 68 ctccctacgcatcctctccccctcgggcgctttccccacccaatccgaccgccggg 123
|||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 132 ctccctacgcctcctcgccctctcgc-cgctttccccacccaatccgaccgccggg 186
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%), Gaps = 5/50 (10%)
Strand = Plus / Plus
Query: 12 tttctattcagtcggttcccctc-----tcccccaagccaaacaccacca 56
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 57 tttctattcagtcggttcccctctcctctcccccaagccaaacaccacca 106
>gb|AW924003.1|AW924003 WS1_32_E04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 446
Score = 478 bits (241), Expect = e-133
Identities = 314/337 (93%), Gaps = 1/337 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 110 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 169
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| |||||||||||||||| |||| |||| ||| ||||||
Sbjct: 170 cttcccggctggagaatcctccatctgtttcggtaactatttggaacaatttacgtggag 229
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 230 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 289
Query: 320 ggaggttctgaagatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatct 379
||||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct: 290 ggaggttttgaagatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatct 349
Query: 380 gcaagtttaccagactgtttctcgttttcgaaattttccaatcctttgggaagtacaatg 439
|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 350 gcaagtttaccagattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatg 409
Query: 440 gctagacctttgccttcccaagggaaagaagttatgg 476
|||||||||||||||||||||||||||||||||||||
Sbjct: 410 gctagacctttgccttcccaagggaaagaagttatgg 446
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 35 cgctttccccacccaatccgaccgccggg 63
>gb|BG054414.1|BG054414 OV2_4_B06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 404
Score = 379 bits (191), Expect = e-103
Identities = 242/259 (93%)
Strand = Plus / Plus
Query: 212 agaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggagattgcataccat 271
||||||||| |||||||||||||||| |||| |||| ||| ||||||||||||||||||
Sbjct: 146 agaatcctccatctgtttcggtaactatttggaacaatttacgtggagattgcataccat 205
Query: 272 caccttccctgaagtgaaaaatatatgggctgatcttggcatttcatgggaggttctgaa 331
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 206 caccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatgggaggttttgaa 265
Query: 332 gatgacgagccaccctcaaaacgcgcaagaacatcctcagtagaatctgcaagtttacca 391
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 266 gatgatgaaccaccctcaaaacgcgcaagagcatcctcagtagaatctgcaagtttacca 325
Query: 392 gactgtttctcgttttcgaaattttccaatcctttgggaagtacaatggctagacctttg 451
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 326 gattatttctcgttttcgaaatccgtcaatcctttgggaagtacaatggctagacctttg 385
Query: 452 ccttcccaagggaaagaag 470
|||||||||||||||||||
Sbjct: 386 ccttcccaagggaaagaag 404
Score = 42.1 bits (21), Expect = 0.063
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 179 ggcgaatcagcggggatcgggac-tcccggctg 210
|||||||| |||||||||||||| |||||||||
Sbjct: 1 ggcgaatcggcggggatcgggacttcccggctg 33
>gb|CD226276.1|CD226276 CCC1_44_B01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_B01_A007 5', mRNA sequence
Length = 331
Score = 246 bits (124), Expect = 2e-063
Identities = 188/208 (90%), Gaps = 1/208 (0%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct: 124 gattcgtcgcggattcggggctcctccgggggtttctcggtgaatcggcggggatcggga 183
Query: 201 ct-cccggctgaagaatcctctatctgtttcggtaactgtttgcaacagtttgtgtggag 259
|| |||||||| ||||||||| ||||||||||||||| |||| | | ||| ||||||
Sbjct: 184 cttcccggctggagaatcctccgtctgtttcggtaactatttggagcgatttacgtggag 243
Query: 260 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcttggcatttcatg 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 244 attgcataccatcaccttccctgaagtgaaaaatatatgggctgatcgtggcatttcatg 303
Query: 320 ggaggttctgaagatgacgagccaccct 347
||||||| ||||||||| || |||||||
Sbjct: 304 ggaggttttgaagatgatgaaccaccct 331
Score = 63.9 bits (32), Expect = 2e-008
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 68 ctccctacgcatcctctccccctcgggcgctttccccacccaatccgaccgccggg 123
|||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 23 ctccctacgcctcctcgccctctcgc-cgctttccccacccaatccgaccgccggg 77
>gb|BE356710.1|BE356710 DG1_12_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 234
Score = 113 bits (57), Expect = 2e-023
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 146 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 205
Query: 201 c-tcccggctgaagaatcctctatctgtt 228
| ||||||||| ||||||||| |||||||
Sbjct: 206 cttcccggctggagaatcctccatctgtt 234
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 cccacccaatccgaccgccggg 123
||||||||||||||||||||||
Sbjct: 78 cccacccaatccgaccgccggg 99
>gb|CW118579.1|CW118579 104_495_11108286_148_34631_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108286, DNA
sequence
Length = 558
Score = 93.7 bits (47), Expect = 2e-017
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 236 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 295
Query: 201 c-tcccggctg 210
| |||||||||
Sbjct: 296 cttcccggctg 306
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 161 cgctttccccacccaatccgaccgccggg 189
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/51 (88%), Gaps = 6/51 (11%)
Strand = Plus / Plus
Query: 12 tttctattcagtcggttcccctc------tcccccaagccaaacaccacca 56
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 67 tttctattcagtcggttcccctctcctcttcccccaagccaaacaccacca 117
>gb|CW126270.1|CW126270 104_506_11112805_148_34726_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112805, DNA
sequence
Length = 587
Score = 93.7 bits (47), Expect = 2e-017
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 323 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 382
Query: 201 c-tcccggctg 210
| |||||||||
Sbjct: 383 cttcccggctg 393
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 248 cgctttccccacccaatccgaccgccggg 276
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/51 (88%), Gaps = 6/51 (11%)
Strand = Plus / Plus
Query: 12 tttctattcagtcggttcccctc------tcccccaagccaaacaccacca 56
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 154 tttctattcagtcggttcccctctcctcttcccccaagccaaacaccacca 204
>gb|CW186193.1|CW186193 104_604_11166438_148_36707_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166438, DNA
sequence
Length = 618
Score = 93.7 bits (47), Expect = 2e-017
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 91 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 150
Query: 201 c-tcccggctg 210
| |||||||||
Sbjct: 151 cttcccggctg 161
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 16 cgctttccccacccaatccgaccgccggg 44
>gb|CW188587.1|CW188587 104_608_11173120_148_36731_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173120, DNA
sequence
Length = 596
Score = 93.7 bits (47), Expect = 2e-017
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 141 gattcggcgcggattcggggctcctctcggggtttctcggcgaatcagcggggatcggga 200
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 414 gattcgccgcggattcggggctcctccgggggtttctcggcgaatcggcggggatcggga 473
Query: 201 c-tcccggctg 210
| |||||||||
Sbjct: 474 cttcccggctg 484
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 339 cgctttccccacccaatccgaccgccggg 367
Score = 56.0 bits (28), Expect = 4e-006
Identities = 45/51 (88%), Gaps = 6/51 (11%)
Strand = Plus / Plus
Query: 12 tttctattcagtcggttcccctc------tcccccaagccaaacaccacca 56
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 245 tttctattcagtcggttcccctctcctcttcccccaagccaaacaccacca 295
>gb|CW186192.1|CW186192 104_604_11166438_116_36708_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166438, DNA
sequence
Length = 619
Score = 61.9 bits (31), Expect = 7e-008
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 169 ggggtttctcggcgaatcagcggggatcgggac-tcccggctg 210
|||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 618 ggggtttctcggcgaatcggcggggatcgggacttcccggctg 576
>gb|BI643699.1|BI643699 EM1_19_H12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 138
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 cgctttccccacccaatccgaccgccggg 123
|||||||||||||||||||||||||||||
Sbjct: 51 cgctttccccacccaatccgaccgccggg 79
>gb|BG355555.1|BG355555 EM1_17_H01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 402
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 274 ccttccctgaagtgaaaaata 294
|||||||||||||||||||||
Sbjct: 337 ccttccctgaagtgaaaaata 357
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 169,545
Number of Sequences: 832831
Number of extensions: 169545
Number of successful extensions: 46584
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46482
Number of HSP's gapped (non-prelim): 67
length of query: 657
length of database: 491,359,669
effective HSP length: 19
effective length of query: 638
effective length of database: 475,535,880
effective search space: 303391891440
effective search space used: 303391891440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)