BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063F13F020916.3.1
(668 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW158191.1|CW158191 104_561_11147923_116_36387_066 Sorgh... 92 8e-017
gb|CW240723.1|CW240723 104_699_11218369_148_37534_005 Sorgh... 92 8e-017
gb|CW090283.1|CW090283 104_436_10949194_114_32605_045 Sorgh... 58 1e-006
gb|CW090284.1|CW090284 104_436_10949194_116_32609_045 Sorgh... 58 1e-006
gb|CW126891.1|CW126891 104_507_11113138_116_34735_035 Sorgh... 58 1e-006
gb|CW282241.1|CW282241 104_758_11408609_116_35465_075 Sorgh... 58 1e-006
gb|CX614862.1|CX614862 GABR1_16_F12.g1_A002 GA- or brassino... 58 1e-006
gb|CD228702.1|CD228702 CCC1_9_B11.b1_A007 Callus culture/ce... 46 0.004
gb|CW267640.1|CW267640 104_738_11400846_148_35300_031 Sorgh... 44 0.016
gb|CW360371.1|CW360371 fsbb001f028g20k0 Sorghum methylation... 44 0.016
gb|CW473889.1|CW473889 fsbb001f229h15f0 Sorghum methylation... 44 0.016
gb|CL172133.1|CL172133 104_374_10889933_116_31775_221 Sorgh... 42 0.064
gb|CW114027.1|CW114027 104_488_11105770_148_34562_037 Sorgh... 42 0.064
gb|CW144288.1|CW144288 104_536_11137862_148_34963_057 Sorgh... 42 0.064
gb|CW170856.1|CW170856 104_581_11155431_148_36522_058 Sorgh... 42 0.064
gb|CW233122.1|CW233122 104_686_11213198_116_37372_061 Sorgh... 42 0.064
gb|CW299904.1|CW299904 104_783_11463364_148_36247_014 Sorgh... 42 0.064
gb|CW360609.1|CW360609 fsbb001f028m12f0 Sorghum methylation... 42 0.064
gb|AW672399.1|AW672399 LG1_359_E09.b1_A002 Light Grown 1 (L... 42 0.064
>gb|CW158191.1|CW158191 104_561_11147923_116_36387_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147923, DNA
sequence
Length = 741
Score = 91.7 bits (46), Expect = 8e-017
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 149 ctcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcaccaag 208
||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 269 ctccctggctgcccggacaagtgcggcaacatcagcatcccctaccccttcggcaccaag 328
Query: 209 gagggatgct 218
||||| ||||
Sbjct: 329 gagggctgct 338
>gb|CW240723.1|CW240723 104_699_11218369_148_37534_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218369, DNA
sequence
Length = 589
Score = 91.7 bits (46), Expect = 8e-017
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 149 ctcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcaccaag 208
||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 491 ctccctggctgcccggacaagtgcggcaacatcagcatcccctacccgttcggcaccaag 432
Query: 209 gagggatgct 218
||||| ||||
Sbjct: 431 gagggctgct 422
>gb|CW090283.1|CW090283 104_436_10949194_114_32605_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949194, DNA
sequence
Length = 806
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 169 gtgcggcaacataagcatcccctaccctttcggcacc 205
|||||||||||||| | ||||||||||||||||||||
Sbjct: 634 gtgcggcaacataaccgtcccctaccctttcggcacc 598
>gb|CW090284.1|CW090284 104_436_10949194_116_32609_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949194, DNA
sequence
Length = 661
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 169 gtgcggcaacataagcatcccctaccctttcggcacc 205
|||||||||||||| | ||||||||||||||||||||
Sbjct: 404 gtgcggcaacataaccgtcccctaccctttcggcacc 440
>gb|CW126891.1|CW126891 104_507_11113138_116_34735_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113138, DNA
sequence
Length = 587
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 169 gtgcggcaacataagcatcccctaccctttcggcacc 205
|||||||||||||| | ||||||||||||||||||||
Sbjct: 511 gtgcggcaacataaccgtcccctaccctttcggcacc 547
>gb|CW282241.1|CW282241 104_758_11408609_116_35465_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408609, DNA
sequence
Length = 558
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 169 gtgcggcaacataagcatcccctaccctttcggcacc 205
|||||||||||||| | ||||||||||||||||||||
Sbjct: 451 gtgcggcaacataaccgtcccctaccctttcggcacc 487
>gb|CX614862.1|CX614862 GABR1_16_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_F12_A002 5', mRNA sequence
Length = 725
Score = 58.0 bits (29), Expect = 1e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 169 gtgcggcaacataagcatcccctaccctttcggcacc 205
|||||||||||||| | ||||||||||||||||||||
Sbjct: 312 gtgcggcaacataaccgtcccctaccctttcggcacc 348
>gb|CD228702.1|CD228702 CCC1_9_B11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_9_B11_A007 3', mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 173 ggcaacataagcatcccctaccctttcggca 203
|||||| | ||||||||||||||||||||||
Sbjct: 73 ggcaacctgagcatcccctaccctttcggca 43
>gb|CW267640.1|CW267640 104_738_11400846_148_35300_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400846, DNA
sequence
Length = 773
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggca 203
||||||||||| |||||||| ||||| |||||||
Sbjct: 159 tgcggcaacatcagcatcccttacccgttcggca 192
>gb|CW360371.1|CW360371 fsbb001f028g20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028g20, DNA
sequence
Length = 693
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggca 203
||||||||||| | |||||||||||| |||||||
Sbjct: 457 tgcggcaacattaccatcccctacccattcggca 490
>gb|CW473889.1|CW473889 fsbb001f229h15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229h15, DNA
sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggca 203
||||||||||| |||||||| ||||| |||||||
Sbjct: 170 tgcggcaacatcagcatcccttacccgttcggca 203
>gb|CL172133.1|CL172133 104_374_10889933_116_31775_221 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889933, DNA
sequence
Length = 329
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggc 202
||||||||||| |||||| ||||||| ||||||
Sbjct: 159 tgcggcaacatcagcatcgcctacccgttcggc 191
>gb|CW114027.1|CW114027 104_488_11105770_148_34562_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105770, DNA
sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggc 202
||||||||||| |||||||| ||||| ||||||
Sbjct: 314 tgcggcaacatcagcatcccgtacccgttcggc 346
>gb|CW144288.1|CW144288 104_536_11137862_148_34963_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137862, DNA
sequence
Length = 605
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||| |||||||| ||||||||||| ||| || | | |||||| ||||| |||||||
Sbjct: 87 cactgccagggtgtcccgacaagtgtggcgacgtgaccatcccttaccccttcggca 31
>gb|CW170856.1|CW170856 104_581_11155431_148_36522_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155431, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggc 202
||||||||||| |||||| ||||||| ||||||
Sbjct: 532 tgcggcaacatcagcatcgcctacccgttcggc 564
>gb|CW233122.1|CW233122 104_686_11213198_116_37372_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213198, DNA
sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 170 tgcggcaacataagcatcccctaccctttcggc 202
||||||||||| |||||| ||||||| ||||||
Sbjct: 362 tgcggcaacatcagcatcgcctacccgttcggc 394
>gb|CW299904.1|CW299904 104_783_11463364_148_36247_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463364, DNA
sequence
Length = 711
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 170 tgcggcaacataagcatcccctaccctttcggc 202
||||||||||| |||||||| ||||| ||||||
Sbjct: 428 tgcggcaacatcagcatcccgtacccgttcggc 396
>gb|CW360609.1|CW360609 fsbb001f028m12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028m12, DNA
sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 170 tgcggcaacataagcatcccctaccctttcggc 202
||||||||||| |||||||| ||||| ||||||
Sbjct: 474 tgcggcaacatcagcatcccgtacccgttcggc 442
>gb|AW672399.1|AW672399 LG1_359_E09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 42.1 bits (21), Expect = 0.064
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||| |||||||| ||||||||||| ||| || | | |||||| ||||| |||||||
Sbjct: 174 cactgccagggtgtcccgacaagtgtggcgacgtgaccatcccttaccccttcggca 230
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,308
Number of Sequences: 832831
Number of extensions: 232308
Number of successful extensions: 77277
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77254
Number of HSP's gapped (non-prelim): 23
length of query: 668
length of database: 491,359,669
effective HSP length: 19
effective length of query: 649
effective length of database: 475,535,880
effective search space: 308622786120
effective search space used: 308622786120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)