BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassino... 827 0.0
gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stres... 188 5e-046
gb|CL700550.1|CL700550 SP__Ba0062J20.r SP__Ba Sorghum propi... 180 1e-043
gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle... 172 3e-041
gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorgh... 165 7e-039
gb|CW434095.1|CW434095 fsbb001f149j24k0 Sorghum methylation... 141 1e-031
gb|BZ345205.1|BZ345205 hr47b09.b1 WGS-SbicolorF (JM107 adap... 137 1e-030
gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2... 88 1e-015
gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2... 80 3e-013
gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sor... 76 5e-012
gb|CW315228.1|CW315228 104_806_11472253_116_35823_059 Sorgh... 62 7e-008
gb|CW219722.1|CW219722 104_654_11196948_116_37152_048 Sorgh... 60 3e-007
gb|CW409693.1|CW409693 fsbb001f104b19k0 Sorghum methylation... 60 3e-007
gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING... 60 3e-007
gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation... 52 7e-005
gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1... 50 3e-004
gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) So... 50 3e-004
gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle... 50 3e-004
gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infecte... 50 3e-004
gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed see... 50 3e-004
gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-tre... 50 3e-004
gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-tre... 50 3e-004
gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation... 48 0.001
gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed see... 48 0.001
gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) So... 44 0.017
gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propi... 40 0.26
gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficien... 40 0.26
>gb|CX622776.1|CX622776 GABR1_65_H12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 5', mRNA sequence
Length = 769
Score = 827 bits (417), Expect = 0.0
Identities = 594/654 (90%), Gaps = 11/654 (1%)
Strand = Plus / Plus
Query: 33 aatgggcgtgcagagagccagtggcgtgtccttgctccatgcactgcttgttgtg----- 87
|||||||||||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 1 aatgggcgtgcagagagccaatggcgcttccttgctccgtgcactagttgttgtgtgcgc 60
Query: 88 ----ttctgggcattgtcttctcgtcgtgcggaggggcagaacccatctggccacctgag 143
| |||||||||||||||||| ||||||||||||||||| || ||| || |||||
Sbjct: 61 cctgtgctgggcattgtcttctcggtgtgcggaggggcagaactcaaatggtcagctgag 120
Query: 144 cgtggatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatcttttt 203
||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 tgtgaatgcctcgccacagaatgctaggaagatccctgataagatgtttggtatcttttt 180
Query: 204 cgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 240
Query: 264 atttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattgggga 323
||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 241 attcgaggccggtgggcctaatacaccttccaatattgatccatggctgatcattgggga 300
Query: 324 tgaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgc 383
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 301 tgaatcaagtatcattgttggaactgatcggacatcatgctttgaacgtaacccggttgc 360
Query: 384 acttcggatggaagttctttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgt 443
||||||||||||||||||||||| |||| |||||||||| || || ||||||||
Sbjct: 361 acttcggatggaagttctttgtgcttctaagaaaactaatgcctgcccgtcaggaggtgt 420
Query: 444 tggggtctataatcctggctactggggcatgaacattgaaaaggggaaggtttataaggt 503
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 421 tggggtctataatcctggttactggggcatgaacattgaaaaaggaaaggtttataaggt 480
Query: 504 gagcctgcatgttaggtcatcagatgcactgtccttgactgcttcccttgacaagctccg 563
|||||||||| ||||||||||||| || |||||||||||| || |||||||||||||||
Sbjct: 481 gagcctgcatattaggtcatcagacacagtgtccttgactg-tttccttgacaagctccg 539
Query: 564 atgggctacaaaaagctcgctgctcataccatcacaggtagcaagaaaacctttgcaaaa 623
|||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 540 atggtctacaaaaa-cttgctgctcacaccatcacaggtagcaagaaaacctttgcaaaa 598
Query: 624 tggacaaaggtagaatttcatttgagatccaaccaaaataacagcaactcaagg 677
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 599 tggacaaagatagaatttcatttgagatccaaccaaaataacaccaactcaagg 652
>gb|CN133998.1|CN133998 OX1_19_D01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 5', mRNA sequence
Length = 689
Score = 188 bits (95), Expect = 5e-046
Identities = 189/219 (86%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 187 atgtttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagag 246
|||||||||||||| || ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct: 444 atgtttggcatcttctttgaggaaatcaaccatgctggagctggtggattgtgggcggag 503
Query: 247 cttgtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatccg 306
||||| ||||||||||| ||||| |||||||| ||||||| ||||| || ||||| ||
Sbjct: 504 cttgttagcaacagaggttttgaagctggtggttctaatactccttcaaacattgaccca 563
Query: 307 tggctgatca-ttggggatgaatcaagtatcattgttggaactgatcggacatcatgttt 365
||| |||||| ||||||||||||| | ||| ||||| | ||| |||||| |||| |||||
Sbjct: 564 tggttgatcanttggggatgaatccaatattattgtggcaacagatcggtcatcctgttt 623
Query: 366 tgaacgtaacccagttgcacttcggatggaagttctttg 404
|| |||||||| ||||||||||||||||||| |||||
Sbjct: 624 tgctagtaacccaattgcacttcggatggaagtactttg 662
>gb|CL700550.1|CL700550 SP__Ba0062J20.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0062J20 3', DNA sequence
Length = 578
Score = 180 bits (91), Expect = 1e-043
Identities = 168/195 (86%), Gaps = 9/195 (4%)
Strand = Plus / Plus
Query: 23 tagctcacacaatgggcgtgcagagagccagtggcgtgtccttgctccatgcactgcttg 82
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 199 tagctcacacaatgggcgtgcagagagccaatggcgcttccttgctccatgcactagttg 258
Query: 83 ttgtg---------ttctgggcattgtcttctcgtcgtgcggaggggcagaacccatctg 133
||||| | |||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 259 ttgtgtgcgccctgtgctgggcattgtcttctcggtgtgcggaggggcagaactcaaatg 318
Query: 134 gccacctgagcgtggatgcctcgccgcagaacgctaggaagatccctgataagatgtttg 193
| || ||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 319 gtcagctgagtgtgaatgcctcgccacagaatgctaggaagatccctgataagatgtttg 378
Query: 194 gcatctttttcgagg 208
| |||||||||||||
Sbjct: 379 gtatctttttcgagg 393
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctg 229
||||||||||||||||||||||||
Sbjct: 555 aggagatcaaccatgctggagctg 578
>gb|BI351404.1|BI351404 IP1_71_B10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 172 bits (87), Expect = 3e-041
Identities = 212/256 (82%)
Strand = Plus / Plus
Query: 229 ggtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaataca 288
||||| |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||
Sbjct: 8 ggtggattgtgggcggagcttgttagcaacagaggttttgaagctggtggttctaatact 67
Query: 289 ccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgttggaact 348
||||| || ||||| || ||| ||||||||||||||||||| | ||| ||||| | |||
Sbjct: 68 ccttcaaacattgacccatggttgatcattggggatgaatccaatattattgtggcaaca 127
Query: 349 gatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttctttgtggt 408
|||||| |||| ||||||| |||||||| ||||||||||||||||||| ||||| ||
Sbjct: 128 gatcggtcatcctgttttgctagtaacccaattgcacttcggatggaagtactttgcgga 187
Query: 409 tctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctggctactgg 468
|| ||||||| || ||||| ||||| ||||| |||| |||||||| ||||||
Sbjct: 188 gctagtggagctaatgcttgcccatcaggaggagttggaatctacaatcctggttactgg 247
Query: 469 ggcatgaacattgaaa 484
||||||||||||||||
Sbjct: 248 ggcatgaacattgaaa 263
>gb|CW315229.1|CW315229 104_806_11472253_148_35827_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 602
Score = 165 bits (83), Expect = 7e-039
Identities = 166/195 (85%), Gaps = 9/195 (4%)
Strand = Plus / Minus
Query: 23 tagctcacacaatgggcgtgcagagagccagtggcgtgtccttgctccatgcactgcttg 82
||||| |||||||||||||||||||||||| ||||| |||||||||| |||||| |||
Sbjct: 600 tagcttacacaatgggcgtgcagagagccaatggcgcttccttgctccgtgcactagttg 541
Query: 83 ttgtg---------ttctgggcattgtcttctcgtcgtgcggaggggcagaacccatctg 133
||||| | |||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 540 ttgtgtgcgccctgtgctgggcattgtcttctcggtgtgcggaggggcagaactcaaatg 481
Query: 134 gccacctgagcgtggatgcctcgccgcagaacgctaggaagatccctgataagatgtttg 193
| || ||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 480 gtcagctgagtgtgaatgcctcgccacagaatgctaggaagatccctgataagatgtttg 421
Query: 194 gcatctttttcgagg 208
| |||||||||||||
Sbjct: 420 gtatctttttcgagg 406
Score = 123 bits (62), Expect = 2e-026
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 261 aggatttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattgg 320
|||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 78 aggattcgaggccggtgggcctaatacaccttccaatattgatccatggctgatcattgg 19
Query: 321 ggatgaatcaagtatcat 338
||||||||||||||||||
Sbjct: 18 ggatgaatcaagtatcat 1
Score = 115 bits (58), Expect = 5e-024
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 187
>gb|CW434095.1|CW434095 fsbb001f149j24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149j24, DNA
sequence
Length = 594
Score = 141 bits (71), Expect = 1e-031
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 599 aggtagcaagaaaacctttgcaaaatggacaaaggtagaatttcatttgagatccaacca 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 195 aggtagcaagaaaacctttgcaaaatggacaaagatagaatttcatttgagatccaacca 136
Query: 659 aaataacagcaactcaagg 677
|||||||| ||||||||||
Sbjct: 135 aaataacaccaactcaagg 117
Score = 137 bits (69), Expect = 1e-030
Identities = 113/125 (90%), Gaps = 2/125 (1%)
Strand = Plus / Minus
Query: 474 gaacattgaaaaggggaaggtttataaggtgagcctgcatgttaggtcatcagatgcact 533
|||||||||||| || |||||||||||||||||||||||| ||||||||||||| || |
Sbjct: 404 gaacattgaaaaaggaaaggtttataaggtgagcctgcatattaggtcatcagacacagt 345
Query: 534 gtccttgactgcttcccttgacaagctccgatgggctacaaaaagctcgctgctcatacc 593
||||||||||| || ||||||||||||||||||| ||||||||| || |||||||| |||
Sbjct: 344 gtccttgactg-tttccttgacaagctccgatggtctacaaaaa-cttgctgctcacacc 287
Query: 594 atcac 598
|||||
Sbjct: 286 atcac 282
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 436 ggaggtgttggggtctataatcctggctactggggcatg 474
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 585 ggaggtgttggggtctataatcctggttactggggcatg 547
>gb|BZ345205.1|BZ345205 hr47b09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr47b09 5', DNA sequence
Length = 385
Score = 137 bits (69), Expect = 1e-030
Identities = 113/125 (90%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 474 gaacattgaaaaggggaaggtttataaggtgagcctgcatgttaggtcatcagatgcact 533
|||||||||||| || |||||||||||||||||||||||| ||||||||||||| || |
Sbjct: 211 gaacattgaaaaaggaaaggtttataaggtgagcctgcatattaggtcatcagacacagt 270
Query: 534 gtccttgactgcttcccttgacaagctccgatgggctacaaaaagctcgctgctcatacc 593
||||||||||| || ||||||||||||||||||| ||||||||| || |||||||| |||
Sbjct: 271 gtccttgactg-tttccttgacaagctccgatggtctacaaaaa-cttgctgctcacacc 328
Query: 594 atcac 598
|||||
Sbjct: 329 atcac 333
Score = 79.8 bits (40), Expect = 3e-013
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 419 ctaatgcctgtccatcgggaggtgttggggtctataatcctggctactggggcatg 474
|||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 12 ctaatgcctgcccgtcaggaggtgttggggtctataatcctggttactggggcatg 67
>gb|BG560033.1|BG560033 RHIZ2_68_F03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 489
Score = 87.7 bits (44), Expect = 1e-015
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||| ||| ||||||||||||||| | ||||| ||||| || |||
Sbjct: 214 gatgcctcgccgcagcttgctcggaagatccctgatacactatttgggatcttctttgag 273
Query: 208 gagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagaggattt 267
|||||||||||||| ||||||||||| | ||||| || ||||| || |||||||| |||
Sbjct: 274 gagatcaaccatgcaggagctggtggcatatgggctgaacttgttagtaacagaggtttt 333
Query: 268 gaggctgg 275
|| |||||
Sbjct: 334 gaagctgg 341
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 346 actgatcggacatcatgttt 365
||||||||||||||||||||
Sbjct: 412 actgatcggacatcatgttt 431
>gb|BG488202.1|BG488202 RHIZ2_60_G05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 554
Score = 79.8 bits (40), Expect = 3e-013
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||| ||| ||||||||||||||| | ||||| ||||| || |||
Sbjct: 435 gatgcctcgccgcagcttgctcggaagatccctgatacactatttgggatcttctttgag 494
Query: 208 gagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||| ||||||||||| | ||||| || ||||| || ||||||||
Sbjct: 495 gagatcaaccatgcaggagctggtggcatatgggctgaacttgttagtaacagagg 550
>gb|BG273563.1|BG273563 OV2_27_C04.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 304
Score = 75.8 bits (38), Expect = 5e-012
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||| ||| ||||||||||||||| | ||||| ||||| || |||
Sbjct: 201 gatgcctcgccgcagcttgctcggaagatccctgatacactatttgggatcttctttgag 260
Query: 208 gagatcaaccatgctggagctggtgg 233
|||||||||||||| |||||||||||
Sbjct: 261 gagatcaaccatgcaggagctggtgg 286
>gb|CW315228.1|CW315228 104_806_11472253_116_35823_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472253, DNA
sequence
Length = 660
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 23 tagctcacacaatgggcgtgcagagagccagtggcgtgtccttgctc 69
||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 614 tagcttacacaatgggcgtgcagagagccaatggcgcttccttgctc 660
>gb|CW219722.1|CW219722 104_654_11196948_116_37152_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196948, DNA
sequence
Length = 642
Score = 60.0 bits (30), Expect = 3e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||| ||||||||||| | |||| |||||||| |||||||||||
Sbjct: 347 aggagatcaaccatgcgggagctggtggaatctgggaggagcttgttagcaacagagg 290
>gb|CW409693.1|CW409693 fsbb001f104b19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104b19, DNA
sequence
Length = 741
Score = 60.0 bits (30), Expect = 3e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||| ||||||||||| | |||| |||||||| |||||||||||
Sbjct: 476 aggagatcaaccatgcgggagctggtggaatctgggaggagcttgttagcaacagagg 419
>gb|AC169378.1| Sorghum bicolor clone SB_BBc0007L02, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 138609
Score = 60.0 bits (30), Expect = 3e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||| ||||||||||| | |||| |||||||| |||||||||||
Sbjct: 14714 aggagatcaaccatgcgggagctggtggaatctgggaggagcttgttagcaacagagg 14657
>gb|CW469202.1|CW469202 fsbb001f221m21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 709
Score = 52.0 bits (26), Expect = 7e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||| ||||||||||| | ||||| || ||||| || ||||||||
Sbjct: 530 aggagatcaaccatgcaggagctggtggcatatgggctgaacttgttagtaacagagg 473
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 346 actgatcggacatcatgttt 365
||||||||||||||||||||
Sbjct: 197 actgatcggacatcatgttt 178
>gb|BE358332.1|BE358332 DG1_29_C02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 233 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 292
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 293 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 352
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 353 catcaaacattgacccgtggtccatcattggagatga 389
>gb|BG556638.1|BG556638 EM1_37_G04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 233 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 292
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 293 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 352
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 353 catcaaacattgacccgtggtccatcattggagatga 389
>gb|BI098360.1|BI098360 IP1_31_E11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 259 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 318
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 319 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 378
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 379 catcaaacattgacccgtggtccatcattggagatga 415
>gb|BM323368.1|BM323368 PIC1_18_E04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 205 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 264
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 265 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 324
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 325 catcaaacattgacccgtggtccatcattggagatga 361
>gb|CD232496.1|CD232496 SS1_45_A09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_A09_A012 5', mRNA sequence
Length = 531
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 224 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 283
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 284 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 343
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 344 catcaaacattgacccgtggtccatcattggagatga 380
>gb|CD424271.1|CD424271 SA1_4_H05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 5', mRNA sequence
Length = 661
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 360 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 419
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 420 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 479
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 480 catcaaacattgacccgtggtccatcattggagatga 516
>gb|CD424983.1|CD424983 SA1_9_H04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 5', mRNA sequence
Length = 704
Score = 50.1 bits (25), Expect = 3e-004
Identities = 124/157 (78%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 237 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 296
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 297 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 356
Query: 290 cttcgaatattgatccgtggctgatcattggggatga 326
| || || ||||| |||||| |||||||| |||||
Sbjct: 357 catcaaacattgacccgtggtccatcattggagatga 393
>gb|CW469203.1|CW469203 fsbb001f221m21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f221m21, DNA
sequence
Length = 752
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgg 233
|||||||||||||||| |||||||||||
Sbjct: 664 aggagatcaaccatgcaggagctggtgg 691
Score = 42.1 bits (21), Expect = 0.065
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgata 184
||||||||||||||| ||| |||||||||||||||
Sbjct: 471 gatgcctcgccgcagcttgctcggaagatccctgata 507
>gb|CD231662.1|CD231662 SS1_22_F04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F04_A012 5', mRNA sequence
Length = 720
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 505 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 564
Query: 230 gtgggttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacac 289
|||| | |||||||||||||| | |||||||| || || ||||| || ||| |||| |
Sbjct: 565 gtggcatatgggcagagcttgtcaataacagaggtttcgaagctggaggccctcatactc 624
Query: 290 cttcgaatattgatccgtgg 309
| || || ||||| ||||||
Sbjct: 625 catcaaacattgacccgtgg 644
>gb|BG322938.1|BG322938 EM1_15_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 44.1 bits (22), Expect = 0.017
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 170 ggaagatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctg 229
||||||||||||| | | ||||| || ||||| |||||||| |||||||| || || |
Sbjct: 419 ggaagatccctgaaacattatttgggatattttttgaggagattaaccatgcaggggccg 478
Query: 230 gtgggttgtgggcagagcttgt 251
|||| | ||||||||||||||
Sbjct: 479 gtggcatatgggcagagcttgt 500
>gb|CW792157.1|CW792157 SP__Ba0089F13.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0089F13 5', DNA sequence
Length = 196
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 346 actgatcggacatcatgttt 365
||||||||||||||||||||
Sbjct: 146 actgatcggacatcatgttt 165
>gb|CF431332.1|CF431332 NIT1_5_E04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_E04_A002 5', mRNA sequence
Length = 266
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 346 actgatcggacatcatgttt 365
||||||||||||||||||||
Sbjct: 187 actgatcggacatcatgttt 206
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 161,123
Number of Sequences: 832831
Number of extensions: 161123
Number of successful extensions: 43095
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43013
Number of HSP's gapped (non-prelim): 76
length of query: 677
length of database: 491,359,669
effective HSP length: 19
effective length of query: 658
effective length of database: 475,535,880
effective search space: 312902609040
effective search space used: 312902609040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)