BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.4
(664 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorgh... 256 2e-066
gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorgh... 256 2e-066
gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation... 256 2e-066
gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorgh... 236 2e-060
gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorgh... 184 7e-045
gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorgh... 170 1e-040
gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorgh... 163 3e-038
gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methy... 149 4e-034
gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methy... 125 6e-027
gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methy... 125 6e-027
gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation... 125 6e-027
gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorgh... 111 8e-023
gb|BZ342244.1|BZ342244 ic81d07.b1 WGS-SbicolorF (JM107 adap... 109 3e-022
gb|CW257776.1|CW257776 104_723_11227518_148_35157_025 Sorgh... 82 7e-014
gb|CL178987.1|CL178987 104_387_10894976_148_31905_272 Sorgh... 80 3e-013
gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation... 80 3e-013
gb|CW483981.1|CW483981 fsbb001f245o03k0 Sorghum methylation... 62 7e-008
gb|CW085868.1|CW085868 104_429_10946635_116_32519_074 Sorgh... 48 0.001
gb|CW447849.1|CW447849 fsbb001f181c14k0 Sorghum methylation... 48 0.001
gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum m... 46 0.004
gb|CW188580.1|CW188580 104_608_11173117_116_36729_055 Sorgh... 46 0.004
gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation... 44 0.016
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 44 0.016
gb|CW024829.1|CW024829 104_226_10487799_114_30497 Sorghum m... 42 0.064
gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorgh... 42 0.064
gb|CF486524.1|CF486524 POL1_38_E10.b1_A002 Pollen Sorghum b... 42 0.064
gb|CN145512.1|CN145512 WOUND1_33_H10.b1_A002 Wounded leaves... 42 0.064
gb|CN146158.1|CN146158 WOUND1_38_C11.b1_A002 Wounded leaves... 42 0.064
gb|CX609668.1|CX609668 ANR1_14_B09.b1_A002 Anaerobic roots ... 42 0.064
>gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 626
Score = 256 bits (129), Expect = 2e-066
Identities = 162/173 (93%)
Strand = Plus / Minus
Query: 1 acggatgtcaggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagc 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 432 acggatgtcaggcaggccatcgccaagctcaatctcagccttgatggccaaatgcttagc 373
Query: 61 gttgttgggatcaaataggtcagtcaggcaccattcatccagtgcaaaatactgcccagg 120
|||||| ||||||||| |||| |||| ||||||||||| ||||||||||||||||||||
Sbjct: 372 gttgttcggatcaaatcggtcggtcaaacaccattcatctagtgcaaaatactgcccagg 313
Query: 121 tttcagcacacggtagacctcactatagacaccttgctgcgataaccagggat 173
|||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 312 tttcagcacacggtagacctcactgtagacgccttgccgcgataaccagggat 260
Score = 125 bits (63), Expect = 6e-027
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 157 ggtgcatgacatgtagcctctattgcataggccgcatcaaaggtgttatcagctattggc 98
Query: 314 atattcatgaagtccccct 332
|| ||||||||||||||||
Sbjct: 97 atgttcatgaagtccccct 79
>gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 724
Score = 256 bits (129), Expect = 2e-066
Identities = 162/173 (93%)
Strand = Plus / Minus
Query: 1 acggatgtcaggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagc 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 658 acggatgtcaggcaggccatcgccaagctcaatctcagccttgatggccaaatgcttagc 599
Query: 61 gttgttgggatcaaataggtcagtcaggcaccattcatccagtgcaaaatactgcccagg 120
|||||| ||||||||| |||| |||| ||||||||||| ||||||||||||||||||||
Sbjct: 598 gttgttcggatcaaatcggtcggtcaaacaccattcatctagtgcaaaatactgcccagg 539
Query: 121 tttcagcacacggtagacctcactatagacaccttgctgcgataaccagggat 173
|||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 538 tttcagcacacggtagacctcactgtagacgccttgccgcgataaccagggat 486
Score = 125 bits (63), Expect = 6e-027
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 ggtgcatgacatgtagcctctattgcataggccgcatcaaaggtgttatcagctattggc 324
Query: 314 atattcatgaagtccccct 332
|| ||||||||||||||||
Sbjct: 323 atgttcatgaagtccccct 305
Score = 119 bits (60), Expect = 3e-025
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 213 ccttcaagaagcagcattgctcactcaaacctgctgaaaaaattagctcctgcaacaaaa 154
Query: 390 aattaaatggtgcatatccatatgctatacagtttt 425
||||||||| |||||| |||||||||||| ||||||
Sbjct: 153 aattaaatgttgcata-ccatatgctataaagtttt 119
>gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 779
Score = 256 bits (129), Expect = 2e-066
Identities = 162/173 (93%)
Strand = Plus / Plus
Query: 1 acggatgtcaggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagc 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 57 acggatgtcaggcaggccatcgccaagctcaatctcagccttgatggccaaatgcttagc 116
Query: 61 gttgttgggatcaaataggtcagtcaggcaccattcatccagtgcaaaatactgcccagg 120
|||||| ||||||||| |||| |||| ||||||||||| ||||||||||||||||||||
Sbjct: 117 gttgttcggatcaaatcggtcggtcaaacaccattcatctagtgcaaaatactgcccagg 176
Query: 121 tttcagcacacggtagacctcactatagacaccttgctgcgataaccagggat 173
|||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 177 tttcagcacacggtagacctcactgtagacgccttgccgcgataaccagggat 229
Score = 125 bits (63), Expect = 6e-027
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 332 ggtgcatgacatgtagcctctattgcataggccgcatcaaaggtgttatcagctattggc 391
Query: 314 atattcatgaagtccccct 332
|| ||||||||||||||||
Sbjct: 392 atgttcatgaagtccccct 410
Score = 119 bits (60), Expect = 3e-025
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 502 ccttcaagaagcagcattgctcactcaaacctgctgaaaaaattagctcctgcaacaaaa 561
Query: 390 aattaaatggtgcatatccatatgctatacagtttt 425
||||||||| |||||| |||||||||||| ||||||
Sbjct: 562 aattaaatgttgcata-ccatatgctataaagtttt 596
Score = 42.1 bits (21), Expect = 0.064
Identities = 38/45 (84%)
Strand = Plus / Plus
Query: 453 aaaccttgccccttgagacatggtagtcattnnngntcaatccag 497
|||||||||||||||||| |||||||| || | |||||||||
Sbjct: 631 aaaccttgccccttgagatctggtagtcgttggagttcaatccag 675
>gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 599
Score = 236 bits (119), Expect = 2e-060
Identities = 152/163 (93%)
Strand = Plus / Plus
Query: 1 acggatgtcaggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagc 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 437 acggatgtcaggcaggccatcgccaagctcaatctcagccttgatggccaaatgcttagc 496
Query: 61 gttgttgggatcaaataggtcagtcaggcaccattcatccagtgcaaaatactgcccagg 120
|||||| ||||||||| |||| |||| ||||||||||| ||||||||||||||||||||
Sbjct: 497 gttgttcggatcaaatcggtcggtcaaacaccattcatctagtgcaaaatactgcccagg 556
Query: 121 tttcagcacacggtagacctcactatagacaccttgctgcgat 163
|||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 557 tttcagcacacggtagacctcactgtagacgccttgccgcgat 599
>gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 708
Score = 184 bits (93), Expect = 7e-045
Identities = 135/149 (90%)
Strand = Plus / Plus
Query: 11 ggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagcgttgttggga 70
|||||||||||||| |||||||||||||||||| ||| || ||||||||||||||| |||
Sbjct: 500 ggcaggccatcgccgagctcaatctcagccttgatggccagatgcttagcgttgtttgga 559
Query: 71 tcaaataggtcagtcaggcaccattcatccagtgcaaaatactgcccaggtttcagcaca 130
|||||| |||| |||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 560 tcaaatcggtcggtcaagcaccattcattaagtgcaaaatactgtccaggtttcagcaca 619
Query: 131 cggtagacctcactatagacaccttgctg 159
||||||| |||||| ||||| ||||||||
Sbjct: 620 cggtagatctcactgtagacgccttgctg 648
>gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 674
Score = 170 bits (86), Expect = 1e-040
Identities = 122/134 (91%)
Strand = Plus / Plus
Query: 11 ggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagcgttgttggga 70
|||||||||||||| |||||||||||||||||| ||| || ||||||||||||||| |||
Sbjct: 541 ggcaggccatcgccgagctcaatctcagccttgatggccagatgcttagcgttgtttgga 600
Query: 71 tcaaataggtcagtcaggcaccattcatccagtgcaaaatactgcccaggtttcagcaca 130
|||||| |||| |||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 601 tcaaatcggtcggtcaagcaccattcattaagtgcaaaatactgtccaggtttcagcaca 660
Query: 131 cggtagacctcact 144
||||||| ||||||
Sbjct: 661 cggtagatctcact 674
>gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 673
Score = 163 bits (82), Expect = 3e-038
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 26 agctcaatctcagccttggtggtcaaatgcttagcgttgttgggatcaaataggtcagtc 85
|||||||||||||||||| ||| || ||||||||||||||| ||||||||| |||| |||
Sbjct: 670 agctcaatctcagccttgatggccagatgcttagcgttgtttggatcaaatcggtcggtc 611
Query: 86 aggcaccattcatccagtgcaaaatactgcccaggtttcagcacacggtagacctcacta 145
| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 610 aagcaccattcattaagtgcaaaatactgtccaggtttcagcacacggtagatctcactg 551
Query: 146 tagacaccttgctg 159
||||| ||||||||
Sbjct: 550 tagacgccttgctg 537
Score = 111 bits (56), Expect = 8e-023
Identities = 145/173 (83%), Gaps = 5/173 (2%)
Strand = Plus / Minus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| || |||||||||||||||| || || ||||||| | |||||||||||||||
Sbjct: 234 ccttcaagaaggagcattgctcactcaagccagccgaaaagacgagctcctgcaaccaaa 175
Query: 390 aattaaatggtgcatatccata-tgctatacagtttt-tgtgttccaaaaag---aagnc 444
||||||||| |||||||||||| ||||||| |||||| | | |||||||||| ||
Sbjct: 174 aattaaatgttgcatatccatattgctataaagttttctttattccaaaaaggaaaatcg 115
Query: 445 taaaatgcaaaccttgccccttgagacatggtagtcattnnngntcaatccag 497
|||||| ||||||| |||||||||| ||||||||||| | |||||||||
Sbjct: 114 taaaatagaaacctttccccttgagatctggtagtcattgtagttcaatccag 62
Score = 101 bits (51), Expect = 8e-020
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 238 gagacatactgcctccggtgcataacatgtagcctgtattgcataggccgcatcaaaggt 297
|||||||||||| || ||||| | ||| ||||| | ||||||| ||||||||||||||||
Sbjct: 431 gagacatactgcatctggtgcgtgacacgtagcatctattgcaaaggccgcatcaaaggt 372
Query: 298 attatcagctattggcatattcatgaagtccccct 332
||||||||||| ||||| ||||||||||||||||
Sbjct: 371 gttatcagctatcggcatgttcatgaagtccccct 337
>gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 576
Score = 149 bits (75), Expect = 4e-034
Identities = 109/119 (91%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 1 acggatgtc-aggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttag 59
||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 458 acggatgtccaggcaggccatcgccaagctcaatctcagccttgatggccaaatgcttag 517
Query: 60 cgttgttgggatcaaataggtcagtcaggcaccattcatccagtgcaaaatactgccca 118
||||||| ||||||||| || | |||| ||||||||||| ||||||||||||||||||
Sbjct: 518 cgttgttcggatcaaatcgggcggtcaaacaccattcatctagtgcaaaatactgccca 576
>gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 707
Score = 125 bits (63), Expect = 6e-027
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 532 ggtgcatgacatgtagcctctattgcataggccgcatcaaaggtgttatcagctattggc 473
Query: 314 atattcatgaagtccccct 332
|| ||||||||||||||||
Sbjct: 472 atgttcatgaagtccccct 454
Score = 121 bits (61), Expect = 9e-026
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 101 agtgcaaaatactgcccaggtttcagcacacggtagacctcactatagacaccttgctgc 160
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct: 707 agtgcaaaatactgcccaggtttcagcacacggtagacctcactgtagacgccttgccgc 648
Query: 161 gataaccagggat 173
|||||||||||||
Sbjct: 647 gataaccagggat 635
Score = 119 bits (60), Expect = 3e-025
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 362 ccttcaagaagcagcattgctcactcaaacctgctgaaaaaattagctcctgcaacaaaa 303
Query: 390 aattaaatggtgcatatccatatgctatacagtttt 425
||||||||| |||||| |||||||||||| ||||||
Sbjct: 302 aattaaatgttgcata-ccatatgctataaagtttt 268
>gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 674
Score = 125 bits (63), Expect = 6e-027
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 516 ggtgcatgacatgtagcctctattgcataggccgcatcaaaggtgttatcagctattggc 457
Query: 314 atattcatgaagtccccct 332
|| ||||||||||||||||
Sbjct: 456 atgttcatgaagtccccct 438
Score = 119 bits (60), Expect = 3e-025
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 346 ccttcaagaagcagcattgctcactcaaacctgctgaaaaaattagctcctgcaacaaaa 287
Query: 390 aattaaatggtgcatatccatatgctatacagtttt 425
||||||||| |||||| |||||||||||| ||||||
Sbjct: 286 aattaaatgttgcata-ccatatgctataaagtttt 252
Score = 87.7 bits (44), Expect = 1e-015
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 118 aggtttcagcacacggtagacctcactatagacaccttgctgcgataaccagggat 173
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 674 aggtttcagcacacggtagacctcactgtagacgccttgccgcgataaccagggat 619
>gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 713
Score = 125 bits (63), Expect = 6e-027
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 650 ggtgcatgacatgtagcctctattgcataggccgcatcaaaggtgttatcagctattggc 591
Query: 314 atattcatgaagtccccct 332
|| ||||||||||||||||
Sbjct: 590 atgttcatgaagtccccct 572
Score = 119 bits (60), Expect = 3e-025
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 480 ccttcaagaagcagcattgctcactcaaacctgctgaaaaaattagctcctgcaacaaaa 421
Query: 390 aattaaatggtgcatatccatatgctatacagtttt 425
||||||||| |||||| |||||||||||| ||||||
Sbjct: 420 aattaaatgttgcata-ccatatgctataaagtttt 386
>gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 682
Score = 111 bits (56), Expect = 8e-023
Identities = 145/173 (83%), Gaps = 5/173 (2%)
Strand = Plus / Plus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| || |||||||||||||||| || || ||||||| | |||||||||||||||
Sbjct: 144 ccttcaagaaggagcattgctcactcaagccagccgaaaagacgagctcctgcaaccaaa 203
Query: 390 aattaaatggtgcatatccata-tgctatacagtttt-tgtgttccaaaaag---aagnc 444
||||||||| |||||||||||| ||||||| |||||| | | |||||||||| ||
Sbjct: 204 aattaaatgttgcatatccatattgctataaagttttctttattccaaaaaggaaaatcg 263
Query: 445 taaaatgcaaaccttgccccttgagacatggtagtcattnnngntcaatccag 497
|||||| ||||||| |||||||||| ||||||||||| | |||||||||
Sbjct: 264 taaaatagaaacctttccccttgagatctggtagtcattgtagttcaatccag 316
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 292 aaaggtattatcagctattggcatattcatgaagtccccct 332
|||||| ||||||||||| ||||| ||||||||||||||||
Sbjct: 1 aaaggtgttatcagctatcggcatgttcatgaagtccccct 41
>gb|BZ342244.1|BZ342244 ic81d07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81d07 5', DNA sequence
Length = 678
Score = 109 bits (55), Expect = 3e-022
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 11 ggcaggccatcgccaagctcaatctcagccttggtggtcaaatgcttagcgttgttggga 70
|||||||||||||| |||||||||||||||||| ||| || ||||||||||||||| |||
Sbjct: 97 ggcaggccatcgccgagctcaatctcagccttgatggccagatgcttagcgttgtttgga 38
Query: 71 tcaaataggtcagtcaggcaccattca 97
|||||| |||| |||| ||||||||||
Sbjct: 37 tcaaatcggtcggtcaagcaccattca 11
>gb|CW257776.1|CW257776 104_723_11227518_148_35157_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 777
Score = 81.8 bits (41), Expect = 7e-014
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 1 acggatgtcaggcaggccatcgccaagctcaatctcagcct 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acggatgtcaggcaggccatcgccaagctcaatctcagcct 777
>gb|CL178987.1|CL178987 104_387_10894976_148_31905_272 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894976, DNA
sequence
Length = 473
Score = 79.8 bits (40), Expect = 3e-013
Identities = 142/175 (81%), Gaps = 7/175 (4%)
Strand = Plus / Plus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| || ||||||||||| |||| || || ||||| | | |||||||||| ||||
Sbjct: 111 ccttcaagaaggagcattgctcattcaagccagccgaaaaaacgagctcctgcaatcaaa 170
Query: 390 aattaaatggtgcatatccata-----tgctataca-gtttttgtgttccaaaaa-gaag 442
||||||||| |||||||||||| ||||||| | |||||| | ||||||||| |||
Sbjct: 171 aattaaatgttgcatatccatatatattgctataaaggtttttttattccaaaaaggaaa 230
Query: 443 nctaaaatgcaaaccttgccccttgagacatggtagtcattnnngntcaatccag 497
|||||| |||||||||||||||||| |||||||| || | |||||||||
Sbjct: 231 ggtaaaataaaaaccttgccccttgagatctggtagtcgttgtagttcaatccag 285
>gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156e04, DNA
sequence
Length = 758
Score = 79.8 bits (40), Expect = 3e-013
Identities = 142/175 (81%), Gaps = 7/175 (4%)
Strand = Plus / Plus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| || ||||||||||| |||| || || ||||| | | |||||||||| ||||
Sbjct: 62 ccttcaagaaggagcattgctcattcaagccagccgaaaaaacgagctcctgcaatcaaa 121
Query: 390 aattaaatggtgcatatccata-----tgctataca-gtttttgtgttccaaaaa-gaag 442
||||||||| |||||||||||| ||||||| | |||||| | ||||||||| |||
Sbjct: 122 aattaaatgttgcatatccatatatattgctataaaggtttttttattccaaaaaggaaa 181
Query: 443 nctaaaatgcaaaccttgccccttgagacatggtagtcattnnngntcaatccag 497
|||||| |||||||||||||||||| |||||||| || | |||||||||
Sbjct: 182 ggtaaaataaaaaccttgccccttgagatctggtagtcgttgtagttcaatccag 236
>gb|CW483981.1|CW483981 fsbb001f245o03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245o03, DNA
sequence
Length = 428
Score = 61.9 bits (31), Expect = 7e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 330 ccttcaaggagcagcattgctcactcaaacctgctgaaaagatgtgctcctgcaaccaaa 389
|||||||| || || |||||||| |||| || || ||||| | | ||||||| || ||||
Sbjct: 65 ccttcaagaaggaggattgctcattcaagccagccgaaaaaacgagctcctggaatcaaa 124
Query: 390 aattaaatggtgcatatccatat 412
|||||||||||| ||||||||||
Sbjct: 125 aattaaatggtggatatccatat 147
Score = 42.1 bits (21), Expect = 0.064
Identities = 38/45 (84%)
Strand = Plus / Plus
Query: 453 aaaccttgccccttgagacatggtagtcattnnngntcaatccag 497
|||||||||||||||||| |||||||| || | |||||||||
Sbjct: 195 aaaccttgccccttgagatctggtagtcgttggagttcaatccag 239
>gb|CW085868.1|CW085868 104_429_10946635_116_32519_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946635, DNA
sequence
Length = 546
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 414 ctatacagtttttgtgttccaaaa 437
||||||||||||||||||||||||
Sbjct: 143 ctatacagtttttgtgttccaaaa 166
>gb|CW447849.1|CW447849 fsbb001f181c14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181c14, DNA
sequence
Length = 582
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 414 ctatacagtttttgtgttccaaaa 437
||||||||||||||||||||||||
Sbjct: 340 ctatacagtttttgtgttccaaaa 317
>gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488128, DNA
sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.004
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 387 aaaaattaaatggtgcatatccatatgctatacagtttt 425
|||||||||||| |||||| |||||||||||| ||||||
Sbjct: 5 aaaaattaaatgttgcata-ccatatgctataaagtttt 42
>gb|CW188580.1|CW188580 104_608_11173117_116_36729_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 239
Score = 46.1 bits (23), Expect = 0.004
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Minus
Query: 342 agcattgctcactcaaacctgctgaaaagatgtgctcctgcaac-ca-aaaattaaatgg 399
|||||||||||||||| || || |||||| | ||||| ||||| || |||||||||||
Sbjct: 213 agcattgctcactcaagccagccgaaaagtcgagctccggcaacgcagaaaattaaatgt 154
Query: 400 tgcatatccatat-gctatacagtttt 425
|||| |||||||| |||||| ||||||
Sbjct: 153 tgcagatccatatcgctataaagtttt 127
>gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.016
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| |||||| |||| |||||||| | |||||||| || |||||| | | ||||
Sbjct: 349 ggtgcatgacatgttgcctcaattgcataaacagcatcaaaagtgttatcatcaaatggc 408
Query: 314 atattcatgaagtc 327
|| |||||||||||
Sbjct: 409 atcttcatgaagtc 422
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 44.1 bits (22), Expect = 0.016
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 254 ggtgcataacatgtagcctgtattgcataggccgcatcaaaggtattatcagctattggc 313
||||||| |||||| |||| |||||||| | |||||||| || |||||| | | ||||
Sbjct: 707 ggtgcatgacatgttgcctcaattgcataaacagcatcaaaagtgttatcatcaaatggc 648
Query: 314 atattcatgaagtc 327
|| |||||||||||
Sbjct: 647 atcttcatgaagtc 634
>gb|CW024829.1|CW024829 104_226_10487799_114_30497 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10487799, DNA
sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 11 ggcaggccatcgccaagctcaatctcagccttg 43
|||||||||| |||||||||||| ||| |||||
Sbjct: 102 ggcaggccattgccaagctcaatttcatccttg 70
>gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11224427, DNA sequence
Length = 663
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 ggcaggccatcgccaagctcaatctcagccttg 43
|||||||||| |||||||||||| ||| |||||
Sbjct: 9 ggcaggccattgccaagctcaatttcatccttg 41
>gb|CF486524.1|CF486524 POL1_38_E10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 3', mRNA sequence
Length = 746
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 11 ggcaggccatcgccaagctcaatctcagccttg 43
|||||||||| |||||||||||| ||| |||||
Sbjct: 35 ggcaggccattgccaagctcaatttcatccttg 3
>gb|CN145512.1|CN145512 WOUND1_33_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_33_H10_A002 3', mRNA sequence
Length = 858
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 11 ggcaggccatcgccaagctcaatctcagccttg 43
|||||||||| |||||||||||| ||| |||||
Sbjct: 140 ggcaggccattgccaagctcaatttcatccttg 108
>gb|CN146158.1|CN146158 WOUND1_38_C11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_38_C11_A002 3', mRNA sequence
Length = 755
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 11 ggcaggccatcgccaagctcaatctcagccttg 43
|||||||||| |||||||||||| ||| |||||
Sbjct: 41 ggcaggccattgccaagctcaatttcatccttg 9
>gb|CX609668.1|CX609668 ANR1_14_B09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B09_A002 3', mRNA sequence
Length = 864
Score = 42.1 bits (21), Expect = 0.064
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 11 ggcaggccatcgccaagctcaatctcagccttg 43
|||||||||| |||||||||||| ||| |||||
Sbjct: 144 ggcaggccattgccaagctcaatttcatccttg 112
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,769
Number of Sequences: 832831
Number of extensions: 113769
Number of successful extensions: 29920
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29844
Number of HSP's gapped (non-prelim): 70
length of query: 664
length of database: 491,359,669
effective HSP length: 19
effective length of query: 645
effective length of database: 475,535,880
effective search space: 306720642600
effective search space used: 306720642600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)