BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.2
(581 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW047335.1|CW047335 104_285_10512671_114_30216 Sorghum m... 192 2e-047
gb|CW047336.1|CW047336 104_285_10512671_114_30218 Sorghum m... 192 2e-047
gb|CW144784.1|CW144784 104_537_11138124_148_34969_046 Sorgh... 192 2e-047
gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation... 149 3e-034
gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorgh... 143 2e-032
gb|CW368958.1|CW368958 fsbb001f043c10k0 Sorghum methylation... 123 2e-026
gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum m... 121 8e-026
gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation... 121 8e-026
gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sor... 115 5e-024
gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorgh... 107 1e-021
gb|CL178987.1|CL178987 104_387_10894976_148_31905_272 Sorgh... 107 1e-021
gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorgh... 107 1e-021
gb|CW368957.1|CW368957 fsbb001f043c10f0 Sorghum methylation... 107 1e-021
gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) So... 100 3e-019
gb|CW483981.1|CW483981 fsbb001f245o03k0 Sorghum methylation... 92 7e-017
gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle... 92 7e-017
gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methy... 88 1e-015
gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methy... 88 1e-015
gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum m... 88 1e-015
gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation... 88 1e-015
gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorgh... 62 6e-008
gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorgh... 60 2e-007
gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle... 58 9e-007
gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum b... 58 9e-007
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 58 9e-007
gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassino... 58 9e-007
gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation... 44 0.014
gb|CW085868.1|CW085868 104_429_10946635_116_32519_074 Sorgh... 42 0.056
gb|CW188580.1|CW188580 104_608_11173117_116_36729_055 Sorgh... 42 0.056
gb|CW447849.1|CW447849 fsbb001f181c14k0 Sorghum methylation... 42 0.056
>gb|CW047335.1|CW047335 104_285_10512671_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512671, DNA
sequence
Length = 664
Score = 192 bits (97), Expect = 2e-047
Identities = 173/197 (87%), Gaps = 11/197 (5%)
Strand = Plus / Minus
Query: 109 gacaataacagcatatctgttgtatctcagtagagatgccgagttgttctagatcacagt 168
|||||||||||||| | ||||||||||||| |||||| || || | | ||||||| |||
Sbjct: 543 gacaataacagcat--ccgttgtatctcagttgagatgtcgtgtcgat-tagatcatagt 487
Query: 169 tttggtaattttacagcttcagtcccatactcccatgcttgtatttcagatatccgggtg 228
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 486 tttggtaaatttacagcttcagtccc--------atgcttgtatttcagatatccgggtg 435
Query: 229 aaacttcccgtgaagccattaagcggcaccagcattttatggcactacaattggggctca 288
| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 434 agacttcccgtgaagccattaagcggcatgagcattttattgcactacaattggggctca 375
Query: 289 agaagggtatgaaggtt 305
||||||| |||||||||
Sbjct: 374 agaaggggatgaaggtt 358
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 24
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 48 ttccattttgctggcgggtcagctacatatgcatacc 84
||||||||||||||| |||||||||||||| ||||||
Sbjct: 664 ttccattttgctggcaggtcagctacatatacatacc 628
>gb|CW047336.1|CW047336 104_285_10512671_114_30218 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512671, DNA
sequence
Length = 665
Score = 192 bits (97), Expect = 2e-047
Identities = 173/197 (87%), Gaps = 11/197 (5%)
Strand = Plus / Minus
Query: 109 gacaataacagcatatctgttgtatctcagtagagatgccgagttgttctagatcacagt 168
|||||||||||||| | ||||||||||||| |||||| || || | | ||||||| |||
Sbjct: 543 gacaataacagcat--ccgttgtatctcagttgagatgtcgtgtcgat-tagatcatagt 487
Query: 169 tttggtaattttacagcttcagtcccatactcccatgcttgtatttcagatatccgggtg 228
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 486 tttggtaaatttacagcttcagtccc--------atgcttgtatttcagatatccgggtg 435
Query: 229 aaacttcccgtgaagccattaagcggcaccagcattttatggcactacaattggggctca 288
| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 434 agacttcccgtgaagccattaagcggcatgagcattttattgcactacaattggggctca 375
Query: 289 agaagggtatgaaggtt 305
||||||| |||||||||
Sbjct: 374 agaaggggatgaaggtt 358
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 24
Score = 58.0 bits (29), Expect = 9e-007
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 48 ttccattttgctggcgggtcagctacatatgcatacc 84
||||||||||||||| |||||||||||||| ||||||
Sbjct: 665 ttccattttgctggcaggtcagctacatatacatacc 629
>gb|CW144784.1|CW144784 104_537_11138124_148_34969_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 647
Score = 192 bits (97), Expect = 2e-047
Identities = 173/197 (87%), Gaps = 11/197 (5%)
Strand = Plus / Plus
Query: 109 gacaataacagcatatctgttgtatctcagtagagatgccgagttgttctagatcacagt 168
|||||||||||||| | ||||||||||||| |||||| || || | | ||||||| |||
Sbjct: 97 gacaataacagcat--ccgttgtatctcagttgagatgtcgtgtcgat-tagatcatagt 153
Query: 169 tttggtaattttacagcttcagtcccatactcccatgcttgtatttcagatatccgggtg 228
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 154 tttggtaaatttacagcttcagtccc--------atgcttgtatttcagatatccgggtg 205
Query: 229 aaacttcccgtgaagccattaagcggcaccagcattttatggcactacaattggggctca 288
| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 206 agacttcccgtgaagccattaagcggcatgagcattttattgcactacaattggggctca 265
Query: 289 agaagggtatgaaggtt 305
||||||| |||||||||
Sbjct: 266 agaaggggatgaaggtt 282
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 616
>gb|CW438564.1|CW438564 fsbb001f156e04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156e04, DNA
sequence
Length = 758
Score = 149 bits (75), Expect = 3e-034
Identities = 99/107 (92%)
Strand = Plus / Minus
Query: 199 tcccatgcttgtatttcagatatccgggtgaaacttcccgtgaagccattaagcggcacc 258
||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||
Sbjct: 741 tcccatgcttgtatttcagatatccaggtgagactttccgtgaagccatcaagcggcatg 682
Query: 259 agcattttatggcactacaattggggctcaagaagggtatgaaggtt 305
|||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 681 agcattttattgcactacaattggggctcaagaaggggatgaaggtt 635
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 353
Score = 61.9 bits (31), Expect = 6e-008
Identities = 101/122 (82%), Gaps = 7/122 (5%)
Strand = Plus / Minus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 240 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacct 181
Query: 429 tt-ctttttggaacacanaaa-ctgtatagc-----atatggatatgcaccatttaattt 481
|| |||||||||| | | ||| || |||||| ||||||||||||| ||||||||||
Sbjct: 180 ttcctttttggaataaaaaaacctttatagcaatatatatggatatgcaacatttaattt 121
Query: 482 tt 483
||
Sbjct: 120 tt 119
>gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181361, DNA
sequence
Length = 721
Score = 143 bits (72), Expect = 2e-032
Identities = 81/84 (96%)
Strand = Plus / Minus
Query: 1 actatgatcttgtcactggcttctacgaatatggatggggcgactcattccattttgctg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actatgatcttgtcactgggttctacgaatatggatggggcgactcattccattttgctg 203
Query: 61 gcgggtcagctacatatgcatacc 84
|| |||||||||||||| ||||||
Sbjct: 202 gcaggtcagctacatatacatacc 179
Score = 73.8 bits (37), Expect = 2e-011
Identities = 77/88 (87%), Gaps = 3/88 (3%)
Strand = Plus / Minus
Query: 109 gacaataacagcatatctgttgtatctcagtagagatgccgagttgttctagatcacagt 168
|||||||||||||| | ||||||||||||| |||||| || || | | ||||||| |||
Sbjct: 93 gacaataacagcat--ccgttgtatctcagttgagatgtcgtgtcgat-tagatcatagt 37
Query: 169 tttggtaattttacagcttcagtcccat 196
|||||||| |||||||||||||||||||
Sbjct: 36 tttggtaaatttacagcttcagtcccat 9
>gb|CW368958.1|CW368958 fsbb001f043c10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043c10, DNA
sequence
Length = 649
Score = 123 bits (62), Expect = 2e-026
Identities = 101/110 (91%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 199 tcccatgcttgtatttcagatatccggg-tgaa-acttcccgtgaagccattaagcgg-c 255
|||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |
Sbjct: 603 tcccatgcttgtatttcagatatccggggtgaggacttccggtgaagccattaagcgggc 544
Query: 256 accagcattttatggcactacaattggggctcaagaagggtatgaaggtt 305
| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 543 atgagcattttattgcactacaattggggctcaagaaggggatgaaggtt 494
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 160
Score = 40.1 bits (20), Expect = 0.22
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtt 416
||||||||||||| | ||||||||| ||| |||||||||| ||||||
Sbjct: 47 ataactggattgaactacaatgact-ccagatctcaaggggaaaggtt 1
>gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488078, DNA
sequence
Length = 646
Score = 121 bits (61), Expect = 8e-026
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 1 actatgatcttgtcactggcttctacgaatatggatggggcgactcattccattttgctg 60
|||||||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 455 actatgatcttgccactggcttctacgaatatgtatggggtgactcaatccattttgctg 514
Query: 61 gcgggtcagctacatatgcatacctnnnnnnanttattactacctatcgacaataaca 118
|| |||||||||||||| |||| || | ||||||||| ||||| |||||||||
Sbjct: 515 gcaggtcagctacatatacatatcttactctagttattactatctatcaacaataaca 572
>gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245o03, DNA
sequence
Length = 629
Score = 121 bits (61), Expect = 8e-026
Identities = 103/118 (87%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 1 actatgatcttgtcactggcttctacgaatatgg-atggggcgactcattccattttgct 59
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 510 actatgatcttgccactggcttctacgaatatgggatggggcgactcattccattttgct 569
Query: 60 ggcgggtcagctacatatgcatacctnnnnnnanttattactacctatcgacaataac 117
|| || ||||||||||| ||||||| | ||||||||| |||||||| |||||
Sbjct: 570 gggagggcagctacatatacataccttgctcaagttattactatctatcgactataac 627
>gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 115 bits (58), Expect = 5e-024
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 actatgatcttgtcactggcttctacgaatatggatggggcgactcattccattttgctg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 actatgatcttgccactggcttctacgaatatggatggggcgactcattccattttgctg 555
Query: 61 gc 62
||
Sbjct: 556 gc 557
Score = 79.8 bits (40), Expect = 3e-013
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 215 cagatatccgggtgaaacttcccgtgaagccattaagcggcaccagcattttatggcact 274
||||||||| ||||| |||| |||||||||||| |||||||| |||||| ||| |||||
Sbjct: 557 cagatatccaggtgagactttccgtgaagccatcaagcggcatgagcattntattgcact 616
Query: 275 acaattggggc 285
|||||||||||
Sbjct: 617 acaattggggc 627
>gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894976, DNA
sequence
Length = 772
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 1 actatgatcttgtcactggcttctacgaatatggatggggcgactcattccattttgc 58
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 actatgatcttgccactggcttctacgaatatggatggggcgactcattccattttgc 772
>gb|CL178987.1|CL178987 104_387_10894976_148_31905_272 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894976, DNA
sequence
Length = 473
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 402
Score = 61.9 bits (31), Expect = 6e-008
Identities = 101/122 (82%), Gaps = 7/122 (5%)
Strand = Plus / Minus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 289 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacct 230
Query: 429 tt-ctttttggaacacanaaa-ctgtatagc-----atatggatatgcaccatttaattt 481
|| |||||||||| | | ||| || |||||| ||||||||||||| ||||||||||
Sbjct: 229 ttcctttttggaataaaaaaacctttatagcaatatatatggatatgcaacatttaattt 170
Query: 482 tt 483
||
Sbjct: 169 tt 168
>gb|CW144783.1|CW144783 104_537_11138124_116_34973_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138124, DNA
sequence
Length = 682
Score = 107 bits (54), Expect = 1e-021
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aggttctggatgtgggatgtggaattgggggacctttaatagaaattgccagattcag 433
Score = 61.9 bits (31), Expect = 6e-008
Identities = 100/120 (83%), Gaps = 5/120 (4%)
Strand = Plus / Minus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 320 ataactggattgaactacaatgactaccagatctcaaggggaaaggtttctattttacga 261
Query: 429 tt---ctttttggaacaca-naaactgtatagc-atatggatatgcaccatttaattttt 483
|| |||||||||| | | ||||| |||||| ||||||||||||| ||||||||||||
Sbjct: 260 ttttcctttttggaataaagaaaactttatagcaatatggatatgcaacatttaattttt 201
>gb|CW368957.1|CW368957 fsbb001f043c10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043c10, DNA
sequence
Length = 584
Score = 107 bits (54), Expect = 1e-021
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 actatgatc-ttgtcactggcttctacgaatatggatggggcgactcattccattttgct 59
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 479 actatgatccttgtcactgggttctacgaatatggatggggggactcattccattttgct 538
Query: 60 ggcg-ggtcagctacatatgcatacc 84
|| | |||||||||||||| ||||||
Sbjct: 539 ggggaggtcagctacatatacatacc 564
>gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 139
Score = 99.6 bits (50), Expect = 3e-019
Identities = 60/62 (96%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 actatgatcttgtcactggcttctacgaatatggatggggcgactcattccattttgctg 60
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27 actatgatcttgccactggcttc-acgaatatggatggggcgactcattccattttgctg 85
Query: 61 gc 62
||
Sbjct: 86 gc 87
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 215 cagatatccgggtgaaacttcccgtgaagccattaagcggca 256
||||||||| ||||| |||| |||||||||||| ||||||||
Sbjct: 87 cagatatccaggtgagactttccgtgaagccatcaagcggca 128
>gb|CW483981.1|CW483981 fsbb001f245o03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245o03, DNA
sequence
Length = 428
Score = 91.7 bits (46), Expect = 7e-017
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 301 aggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 414 aggttctcgatgtgggatgtggaattgggggccctttaatagaaattgccagattcag 357
Score = 50.1 bits (25), Expect = 2e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggttt 417
||||||||||||| | ||| |||||||| ||||||||||||||||||
Sbjct: 243 ataactggattgaactccaacgactaccagatctcaaggggcaaggttt 195
Score = 44.1 bits (22), Expect = 0.014
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 458 atatggatatgcaccatttaattttt 483
|||||||||| |||||||||||||||
Sbjct: 147 atatggatatccaccatttaattttt 122
>gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 552
Score = 91.7 bits (46), Expect = 7e-017
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 actatgatcttgtcactggcttctacgaatatggatggggcgactcattccattttgctg 60
|||||||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 480 actatgatcttgccactggcttctacgaatatgtatggggtgactcaatccattttgctg 539
Query: 61 gc 62
||
Sbjct: 540 gc 541
>gb|BZ781676.1|BZ781676 ii30h03.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 707
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 307 tggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19 tggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 70
Score = 60.0 bits (30), Expect = 2e-007
Identities = 100/121 (82%), Gaps = 7/121 (5%)
Strand = Plus / Plus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 186 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacca 245
Query: 429 tt---ctttttggaacaca---naaactgtatagcatatggatatgcaccatttaatttt 482
|| |||||||||| | | ||||| |||||||||||| |||||| |||||||||||
Sbjct: 246 ttttcctttttggaataaaaacaaaactttatagcatatgg-tatgcaacatttaatttt 304
Query: 483 t 483
|
Sbjct: 305 t 305
>gb|BZ781677.1|BZ781677 ii30h03.b7 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 674
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 307 tggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 tggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 54
Score = 60.0 bits (30), Expect = 2e-007
Identities = 100/121 (82%), Gaps = 7/121 (5%)
Strand = Plus / Plus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 170 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacca 229
Query: 429 tt---ctttttggaacaca---naaactgtatagcatatggatatgcaccatttaatttt 482
|| |||||||||| | | ||||| |||||||||||| |||||| |||||||||||
Sbjct: 230 ttttcctttttggaataaaaacaaaactttatagcatatgg-tatgcaacatttaatttt 288
Query: 483 t 483
|
Sbjct: 289 t 289
>gb|CW025326.1|CW025326 104_226_10488128_114_30494 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488128, DNA
sequence
Length = 665
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 307 tggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 tggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 240
Score = 85.7 bits (43), Expect = 4e-015
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 214 tcagatatccgggtgaaacttcccgtgaagccattaagcggcaccagcattttatggcac 273
|||||||||| ||||| |||| |||||| || | |||||||| || |||||||||||||
Sbjct: 657 tcagatatccaggtgatactttccgtgaggcattaaagcggcatcaacattttatggcac 598
Query: 274 tacaattggggctcaagaagggtatgaaggt 304
||||||| |||||||||||||| ||||||||
Sbjct: 597 tacaatt-gggctcaagaagggcatgaaggt 568
Score = 60.0 bits (30), Expect = 2e-007
Identities = 100/121 (82%), Gaps = 7/121 (5%)
Strand = Plus / Minus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 124 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacca 65
Query: 429 tt---ctttttggaacaca---naaactgtatagcatatggatatgcaccatttaatttt 482
|| |||||||||| | | ||||| |||||||||||| |||||| |||||||||||
Sbjct: 64 ttttcctttttggaataaaaacaaaactttatagcatatgg-tatgcaacatttaatttt 6
Query: 483 t 483
|
Sbjct: 5 t 5
>gb|CW479901.1|CW479901 fsbb001f238k14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 713
Score = 87.7 bits (44), Expect = 1e-015
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 307 tggacgtgggatgtggaattgggggacctttaatagaaattgccagattcag 358
|||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 137 tggatgtgggatgtggaattgggggacccttaatagaaattgccagattcag 188
Score = 60.0 bits (30), Expect = 2e-007
Identities = 100/121 (82%), Gaps = 7/121 (5%)
Strand = Plus / Plus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 304 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacca 363
Query: 429 tt---ctttttggaacaca---naaactgtatagcatatggatatgcaccatttaatttt 482
|| |||||||||| | | ||||| |||||||||||| |||||| |||||||||||
Sbjct: 364 ttttcctttttggaataaaaacaaaactttatagcatatgg-tatgcaacatttaatttt 422
Query: 483 t 483
|
Sbjct: 423 t 423
>gb|CW321502.1|CW321502 104_814_11475589_116_35934_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 673
Score = 61.9 bits (31), Expect = 6e-008
Identities = 100/120 (83%), Gaps = 5/120 (4%)
Strand = Plus / Plus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | ||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 58 ataactggattgaactacaatgactaccagatctcaaggggaaaggtttctattttacga 117
Query: 429 tt---ctttttggaacaca-naaactgtatagc-atatggatatgcaccatttaattttt 483
|| |||||||||| | | ||||| |||||| ||||||||||||| ||||||||||||
Sbjct: 118 ttttcctttttggaataaagaaaactttatagcaatatggatatgcaacatttaattttt 177
>gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 724
Score = 60.0 bits (30), Expect = 2e-007
Identities = 100/121 (82%), Gaps = 7/121 (5%)
Strand = Plus / Plus
Query: 369 ataactggattgaccaacaatgactaccatgtctcaaggggcaaggtttgcattttagcc 428
||||||||||||| | |||| |||||||| |||||||||||||||||| |||||| |
Sbjct: 37 ataactggattgaactacaacgactaccagatctcaaggggcaaggtttttattttacca 96
Query: 429 tt---ctttttggaacaca---naaactgtatagcatatggatatgcaccatttaatttt 482
|| |||||||||| | | ||||| |||||||||||| |||||| |||||||||||
Sbjct: 97 ttttcctttttggaataaaaacaaaactttatagcatatgg-tatgcaacatttaatttt 155
Query: 483 t 483
|
Sbjct: 156 t 156
>gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 58.0 bits (29), Expect = 9e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| |||| ||||| || ||||| || ||||| | | ||| ||||| |||||
Sbjct: 346 atgaaggttttggatgtgggctgcggaataggtggaccgctgagagagattgcaagattt 405
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||||||||||| | |||||||||| |||||||| |||||
Sbjct: 406 agctcaacttcagttactggattgaataacaatgaatacca 446
>gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 5', mRNA sequence
Length = 738
Score = 58.0 bits (29), Expect = 9e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| | || ||||| |||||||| || ||||| | | ||||||||| |||||
Sbjct: 625 atgaaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagattt 684
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||||||||||| | || ||||||| |||||||| |||||
Sbjct: 685 agctcaacttcagttaccggattgaataacaatgagtacca 725
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 58.0 bits (29), Expect = 9e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| |||| ||||| || ||||| || ||||| | | ||| ||||| |||||
Sbjct: 466 atgaaggttttggatgtgggctgcggaataggtggaccgctgagagagattgcgagattt 525
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||||||||||| | |||||||||| |||||||| |||||
Sbjct: 526 agctcaacttcagttactggattgaataacaatgaatacca 566
>gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 5', mRNA sequence
Length = 777
Score = 58.0 bits (29), Expect = 9e-007
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 297 atgaaggttctggacgtgggatgtggaattgggggacctttaatagaaattgccagattc 356
||||||||| | || ||||| |||||||| || ||||| | | ||||||||| |||||
Sbjct: 592 atgaaggttttagatgtgggctgtggaataggtggaccactgagagaaattgcaagattt 651
Query: 357 agctcaacttcaataactggattgaccaacaatgactacca 397
|||||||||||| | || ||||||| |||||||| |||||
Sbjct: 652 agctcaacttcagttaccggattgaataacaatgagtacca 692
>gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238k14, DNA
sequence
Length = 779
Score = 44.1 bits (22), Expect = 0.014
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 446 aaactgtatagcatatggatatgcaccatttaattttt 483
||||| |||||||||||| |||||| ||||||||||||
Sbjct: 595 aaactttatagcatatgg-tatgcaacatttaattttt 559
Score = 42.1 bits (21), Expect = 0.056
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 373 ctggattgaccaacaatgactaccatgtctcaaggggcaaggttt 417
||||||||| | ||| |||||||| ||||||||||||||||||
Sbjct: 675 ctggattgaactccaacgactaccagatctcaaggggcaaggttt 631
>gb|CW085868.1|CW085868 104_429_10946635_116_32519_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10946635, DNA
sequence
Length = 546
Score = 42.1 bits (21), Expect = 0.056
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 433 ttttggaacacanaaactgtatag 456
|||||||||||| |||||||||||
Sbjct: 166 ttttggaacacaaaaactgtatag 143
>gb|CW188580.1|CW188580 104_608_11173117_116_36729_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 239
Score = 42.1 bits (21), Expect = 0.056
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 369 ataactggattgaccaacaatgactacca 397
||||||||||||| | |||||||||||||
Sbjct: 47 ataactggattgaactacaatgactacca 75
>gb|CW447849.1|CW447849 fsbb001f181c14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181c14, DNA
sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.056
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 433 ttttggaacacanaaactgtatag 456
|||||||||||| |||||||||||
Sbjct: 317 ttttggaacacaaaaactgtatag 340
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 101,044
Number of Sequences: 832831
Number of extensions: 101044
Number of successful extensions: 27196
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27103
Number of HSP's gapped (non-prelim): 73
length of query: 581
length of database: 491,359,669
effective HSP length: 19
effective length of query: 562
effective length of database: 475,535,880
effective search space: 267251164560
effective search space used: 267251164560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)