BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD235156.1|CD235156 SS1_21_C09.g1_A012 Salt-stressed see... 94 2e-017
gb|BG051230.1|BG051230 FM1_57_H01.b1_A003 Floral-Induced Me... 92 8e-017
gb|CD210909.1|CD210909 HS1_66_A05.g1_A012 Heat-shocked seed... 88 1e-015
gb|CD231033.1|CD231033 SS1_7_C11.g1_A012 Salt-stressed seed... 88 1e-015
gb|BM324821.1|BM324821 PIC1_36_B07.b1_A002 Pathogen-infecte... 86 5e-015
gb|CD428471.1|CD428471 ETH1_31_F12.g1_A002 Ethylene-treated... 86 5e-015
gb|CD428545.1|CD428545 ETH1_27_H10.g1_A002 Ethylene-treated... 86 5e-015
gb|CD463447.1|CD463447 ETH1_44_D02.g1_A002 Ethylene-treated... 86 5e-015
gb|CN141588.1|CN141588 OX1_52_D05.g1_A002 Oxidatively-stres... 86 5e-015
gb|CN142539.1|CN142539 WOUND1_10_D07.g1_A002 Wounded leaves... 86 5e-015
gb|CN143383.1|CN143383 WOUND1_15_H12.g1_A002 Wounded leaves... 86 5e-015
gb|CN144511.1|CN144511 WOUND1_22_G08.g1_A002 Wounded leaves... 86 5e-015
gb|CX613827.1|CX613827 GABR1_10_A04.g1_A002 GA- or brassino... 86 5e-015
gb|CX618747.1|CX618747 GABR1_41_A06.g1_A002 GA- or brassino... 86 5e-015
gb|CX623291.1|CX623291 GABR1_68_G07.g1_A002 GA- or brassino... 86 5e-015
gb|CD462463.1|CD462463 ETH1_37_D09.g1_A002 Ethylene-treated... 78 1e-012
gb|BM324148.1|BM324148 PIC1_24_G05.b1_A002 Pathogen-infecte... 76 5e-012
gb|BM324826.1|BM324826 PIC1_36_C02.b1_A002 Pathogen-infecte... 76 5e-012
gb|BM325406.1|BM325406 PIC1_44_B08.b1_A002 Pathogen-infecte... 76 5e-012
gb|CN134682.1|CN134682 OX1_27_G04.g1_A002 Oxidatively-stres... 76 5e-012
gb|CN134837.1|CN134837 OX1_28_G03.g1_A002 Oxidatively-stres... 76 5e-012
gb|BE599170.1|BE599170 PI1_86_C05.b1_A002 Pathogen induced ... 72 7e-011
gb|BM322248.1|BM322248 PIC1_2_A11.b1_A002 Pathogen-infected... 72 7e-011
gb|BM322891.1|BM322891 PIC1_14_F07.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM323153.1|BM323153 PIC1_8_A04.b1_A002 Pathogen-infected... 72 7e-011
gb|BM323183.1|BM323183 PIC1_16_C08.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM323962.1|BM323962 PIC1_29_G01.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM324133.1|BM324133 PIC1_24_E11.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM324556.1|BM324556 PIC1_32_G01.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM325132.1|BM325132 PIC1_40_D03.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM325147.1|BM325147 PIC1_40_C04.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM325840.1|BM325840 PIC1_53_E01.b1_A002 Pathogen-infecte... 72 7e-011
gb|BM325945.1|BM325945 PIC1_54_G06.b1_A002 Pathogen-infecte... 72 7e-011
gb|CF756059.1|CF756059 DSAF1_3_F03.b1_A011 Drought-stressed... 68 1e-009
gb|BZ333147.1|BZ333147 hx56b02.b1 WGS-SbicolorF (JM107 adap... 56 4e-006
gb|CL182327.1|CL182327 104_393_10897349_148_31921_341 Sorgh... 56 4e-006
gb|CW477828.1|CW477828 fsbb001f235f19f0 Sorghum methylation... 56 4e-006
gb|BM325487.1|BM325487 PIC1_45_B09.b1_A002 Pathogen-infecte... 56 4e-006
gb|CD211984.1|CD211984 HS1_67_B09.g1_A012 Heat-shocked seed... 56 4e-006
gb|CL698595.2|CL698595 SP__Ba0032E06.r SP__Ba Sorghum propi... 54 2e-005
gb|CW257991.1|CW257991 104_723_11227634_116_35159_003 Sorgh... 48 0.001
gb|AW563321.1|AW563321 LG1_235_A01.b1_A002 Light Grown 1 (L... 48 0.001
gb|CF430037.1|CF430037 PH1_25_G12.g1_A002 Phosphorous-defic... 48 0.001
gb|CN144313.1|CN144313 WOUND1_21_A07.g1_A002 Wounded leaves... 48 0.001
gb|CN145262.1|CN145262 WOUND1_27_F10.g1_A002 Wounded leaves... 48 0.001
gb|CN149552.1|CN149552 WOUND1_63_B02.g1_A002 Wounded leaves... 48 0.001
gb|AW563740.1|AW563740 LG1_248_A08.g1_A002 Light Grown 1 (L... 44 0.016
gb|CD235025.1|CD235025 SS1_19_D07.g1_A012 Salt-stressed see... 44 0.016
gb|CW286556.1|CW286556 104_764_11410940_116_35516_076 Sorgh... 42 0.063
gb|CW321720.1|CW321720 104_815_11475703_148_35940_028 Sorgh... 42 0.063
gb|CW351637.1|CW351637 fsbb001f013h18f0 Sorghum methylation... 42 0.063
gb|BZ344434.1|BZ344434 hp63h11.b1 WGS-SbicolorF (JM107 adap... 40 0.25
gb|CL163310.1|CL163310 104_356_10807048_116_31811_184 Sorgh... 40 0.25
gb|CL167818.1|CL167818 104_365_10810355_116_31805_035 Sorgh... 40 0.25
gb|CL173901.1|CL173901 104_377_10891196_116_31793_332 Sorgh... 40 0.25
gb|CL173902.1|CL173902 104_377_10891196_148_31792_332 Sorgh... 40 0.25
gb|CL184870.1|CL184870 104_398_10899146_114_32369_007 Sorgh... 40 0.25
gb|CL184871.1|CL184871 104_398_10899146_116_32373_007 Sorgh... 40 0.25
gb|CL196343.1|CL196343 104_422_10942994_114_32346_007 Sorgh... 40 0.25
gb|CW047936.1|CW047936 104_285_10512957_114_30216 Sorghum m... 40 0.25
gb|CW047937.1|CW047937 104_285_10512957_114_30218 Sorghum m... 40 0.25
gb|CW081967.1|CW081967 104_422_10942994_114_32317_007 Sorgh... 40 0.25
gb|CW085130.1|CW085130 104_428_10946209_114_32558_009 Sorgh... 40 0.25
gb|CW104023.1|CW104023 104_472_11012205_116_34432_081 Sorgh... 40 0.25
gb|CW107888.1|CW107888 104_478_11096841_116_34485_041 Sorgh... 40 0.25
gb|CW120631.1|CW120631 104_498_11109442_116_34652_045 Sorgh... 40 0.25
gb|CW160293.1|CW160293 104_566_11149807_116_36428_020 Sorgh... 40 0.25
gb|CW166626.1|CW166626 104_575_11153154_148_36763_071 Sorgh... 40 0.25
gb|CW168992.1|CW168992 104_578_11154440_116_36602_018 Sorgh... 40 0.25
gb|CW186827.1|CW186827 104_605_11166770_148_36715_015 Sorgh... 40 0.25
gb|CW230090.1|CW230090 104_671_11207664_116_37270_086 Sorgh... 40 0.25
gb|CW230091.1|CW230091 104_671_11207664_148_37266_086 Sorgh... 40 0.25
gb|CW284076.1|CW284076 104_760_11409583_116_35483_020 Sorgh... 40 0.25
gb|CW321475.1|CW321475 104_814_11475573_148_35936_081 Sorgh... 40 0.25
gb|CW329731.1|CW329731 104_826_11479999_148_35996_026 Sorgh... 40 0.25
gb|CW347456.1|CW347456 fsbb001f007f23k0 Sorghum methylation... 40 0.25
gb|CW362339.1|CW362339 fsbb001f033f14f0 Sorghum methylation... 40 0.25
gb|CW377448.1|CW377448 fsbb001f055m07k0 Sorghum methylation... 40 0.25
gb|CW381306.1|CW381306 fsbb001f062k09f0 Sorghum methylation... 40 0.25
gb|CW394614.1|CW394614 fsbb001f082e17k0 Sorghum methylation... 40 0.25
gb|CW406898.1|CW406898 fsbb001f100c03k0 Sorghum methylation... 40 0.25
gb|CW462407.1|CW462407 fsbb001f210i19k0 Sorghum methylation... 40 0.25
gb|CW479572.1|CW479572 fsbb001f238c16f0 Sorghum methylation... 40 0.25
gb|BE592539.1|BE592539 WS1_94_D08.b1_A002 Water-stressed 1 ... 40 0.25
gb|CB925231.1|CB925231 ABA1_20_E04.g1_A012 Abscisic acid-tr... 40 0.25
gb|CN128177.1|CN128177 RHOH1_27_B11.g1_A002 Acid- and alkal... 40 0.25
>gb|CD235156.1|CD235156 SS1_21_C09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_21_C09_A012 5', mRNA sequence
Length = 621
Score = 93.7 bits (47), Expect = 2e-017
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 82 atataagatatgattttcatatggctgaaggggaaggagaatggagctactccaagaatt 141
Query: 136 gtaggcg 142
||||||
Sbjct: 142 ctaggcg 148
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 338 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 397
Query: 422 gt 423
||
Sbjct: 398 gt 399
>gb|BG051230.1|BG051230 FM1_57_H01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 469
Score = 91.7 bits (46), Expect = 8e-017
Identities = 158/197 (80%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcgccag 146
||||| |||||| | |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 66 gattttcatatgactgaaggggaaggagaatggagctactccaagaattctaggcgtcaa 125
Query: 147 caagtagctgtnnnnnagaccaggccaatggtcgagactgccgtcaagcaggtgtacgca 206
|| || | | |||||| |||||||| |||| |||| | || | |||||||||
Sbjct: 126 gaaatattttttcgtgagaccaaaccaatggttgagaatgccataaaagaagtgtacgca 185
Query: 207 gctctcctccccagaaccatggtcgtcgccgacctcggatgctctgcaggaccgaacacg 266
|||| ||||||| ||| ||| || | |||||||| |||||||||| ||||| ||| |
Sbjct: 186 actcttctccccaaaactatgatcattgccgacctaggatgctctgtgggaccaaacgca 245
Query: 267 ctgctcttcatctctag 283
||||||||||||||||
Sbjct: 246 ttgctcttcatctctag 262
>gb|CD210909.1|CD210909 HS1_66_A05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_66_A05_A012 5', mRNA sequence
Length = 506
Score = 87.7 bits (44), Expect = 1e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 76 atataagatatgattttcatatggctgaaggggaaggagaatggagctactccaagaatt 135
>gb|CD231033.1|CD231033 SS1_7_C11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_7_C11_A012 5', mRNA sequence
Length = 682
Score = 87.7 bits (44), Expect = 1e-015
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 60 atataagatatgattttcatatggctgaaggggaaggagaatggagctactccaagaatt 119
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 316 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 375
Query: 422 gt 423
||
Sbjct: 376 gt 377
>gb|BM324821.1|BM324821 PIC1_36_B07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 561
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 65 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 124
Query: 136 gtaggcg 142
||||||
Sbjct: 125 ctaggcg 131
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 321 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 380
Query: 422 gt 423
||
Sbjct: 381 gt 382
>gb|CD428471.1|CD428471 ETH1_31_F12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_F12_A002 5', mRNA sequence
Length = 754
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 85 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 144
Query: 136 gtaggcg 142
||||||
Sbjct: 145 ctaggcg 151
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 341 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 400
Query: 422 gt 423
||
Sbjct: 401 gt 402
>gb|CD428545.1|CD428545 ETH1_27_H10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_H10_A002 5', mRNA sequence
Length = 730
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 61 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 120
Query: 136 gtaggcg 142
||||||
Sbjct: 121 ctaggcg 127
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 317 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 376
Query: 422 gt 423
||
Sbjct: 377 gt 378
>gb|CD463447.1|CD463447 ETH1_44_D02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_D02_A002 5', mRNA sequence
Length = 592
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 90 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 149
Query: 136 gtaggcg 142
||||||
Sbjct: 150 ctaggcg 156
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 346 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 405
Query: 422 gt 423
||
Sbjct: 406 gt 407
>gb|CN141588.1|CN141588 OX1_52_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_52_D05_A002 5', mRNA sequence
Length = 759
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 62 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 121
Query: 136 gtaggcg 142
||||||
Sbjct: 122 ctaggcg 128
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 318 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 377
Query: 422 gt 423
||
Sbjct: 378 gt 379
>gb|CN142539.1|CN142539 WOUND1_10_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_10_D07_A002 5', mRNA sequence
Length = 810
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 76 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 135
Query: 136 gtaggcg 142
||||||
Sbjct: 136 ctaggcg 142
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 732 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 791
Query: 422 gt 423
||
Sbjct: 792 gt 793
>gb|CN143383.1|CN143383 WOUND1_15_H12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_15_H12_A002 5', mRNA sequence
Length = 470
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 60 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 119
Query: 136 gtaggcg 142
||||||
Sbjct: 120 ctaggcg 126
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 316 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 375
Query: 422 gt 423
||
Sbjct: 376 gt 377
>gb|CN144511.1|CN144511 WOUND1_22_G08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_G08_A002 5', mRNA sequence
Length = 824
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 68 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 127
Query: 136 gtaggcg 142
||||||
Sbjct: 128 ctaggcg 134
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 324 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 383
Query: 422 gt 423
||
Sbjct: 384 gt 385
>gb|CX613827.1|CX613827 GABR1_10_A04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_10_A04_A002 5', mRNA sequence
Length = 803
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 62 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 121
Query: 136 gtaggcg 142
||||||
Sbjct: 122 ctaggcg 128
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 318 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 377
Query: 422 gt 423
||
Sbjct: 378 gt 379
>gb|CX618747.1|CX618747 GABR1_41_A06.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_41_A06_A002 5', mRNA sequence
Length = 686
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 67 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 126
Query: 136 gtaggcg 142
||||||
Sbjct: 127 ctaggcg 133
>gb|CX623291.1|CX623291 GABR1_68_G07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_G07_A002 5', mRNA sequence
Length = 425
Score = 85.7 bits (43), Expect = 5e-015
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 61 atataagatatgattttcatatggctgatggggaaggagaatggagctactccaagaatt 120
Query: 136 gtaggcg 142
||||||
Sbjct: 121 ctaggcg 127
>gb|CD462463.1|CD462463 ETH1_37_D09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_37_D09_A002 5', mRNA sequence
Length = 663
Score = 77.8 bits (39), Expect = 1e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 76 atataagacgtgatttccatatggccgaaggggaaggagaatggagctactccaagaatt 135
|||||||| |||||| |||||||| || ||||||||| |||||||||||||||||||||
Sbjct: 76 atataagatatgattttcatatggctgatggggaaggataatggagctactccaagaatt 135
Query: 136 gtaggcg 142
||||||
Sbjct: 136 ctaggcg 142
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 332 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 391
Query: 422 gt 423
||
Sbjct: 392 gt 393
>gb|BM324148.1|BM324148 PIC1_24_G05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 535
Score = 75.8 bits (38), Expect = 5e-012
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 291 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 350
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctgaggg 592
|||| || ||||| | || || |||| |||||||||||||||
Sbjct: 351 cactcttcatactgccttcactggcgctcccaggaacctgaggg 394
>gb|BM324826.1|BM324826 PIC1_36_C02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 554
Score = 75.8 bits (38), Expect = 5e-012
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 274 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 333
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctgaggg 592
|||| || ||||| | || || |||| |||||||||||||||
Sbjct: 334 cactcttcatactgccttcactggcgctcccaggaacctgaggg 377
>gb|BM325406.1|BM325406 PIC1_44_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 75.8 bits (38), Expect = 5e-012
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 274 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 333
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctgaggg 592
|||| || ||||| | || || |||| |||||||||||||||
Sbjct: 334 cactcttcatactgccttcactggcgctcccaggaacctgaggg 377
>gb|CN134682.1|CN134682 OX1_27_G04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_G04_A002 5', mRNA sequence
Length = 793
Score = 75.8 bits (38), Expect = 5e-012
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 436 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 495
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctgaggg 592
|||| || ||||| | || || |||| |||||||||||||||
Sbjct: 496 cactcttcatactgccttcactggcgctcccaggaacctgaggg 539
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 61 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 116
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 26 catataatcccaagctcctc 45
>gb|CN134837.1|CN134837 OX1_28_G03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_28_G03_A002 5', mRNA sequence
Length = 773
Score = 75.8 bits (38), Expect = 5e-012
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 437 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 496
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctgaggg 592
|||| || ||||| | || || |||| |||||||||||||||
Sbjct: 497 cactcttcatactgccttcactggcgctcccaggaacctgaggg 540
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 61 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 116
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 26 catataatcccaagctcctc 45
>gb|BE599170.1|BE599170 PI1_86_C05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 530
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 55 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 110
Score = 69.9 bits (35), Expect = 3e-010
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 430 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 489
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctga 589
|||| || ||||| | || || |||| ||||||||||||
Sbjct: 490 cactcttcatactgccttcactggcgctcccaggaacctga 530
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 20 catataatcccaagctcctc 39
>gb|BM322248.1|BM322248 PIC1_2_A11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 516
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 59 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 114
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 24 catataatcccaagctcctc 43
>gb|BM322891.1|BM322891 PIC1_14_F07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 529
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 58 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 113
Score = 61.9 bits (31), Expect = 7e-008
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 433 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 492
Query: 549 nactcctcctactgnntncaatgncgctnccaggaac 585
|||| || ||||| | || || |||| ||||||||
Sbjct: 493 cactcttcatactgccttcactggcgctcccaggaac 529
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 23 catataatcccaagctcctc 42
>gb|BM323153.1|BM323153 PIC1_8_A04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 528
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 66 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 121
Score = 54.0 bits (27), Expect = 2e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 441 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 500
Query: 549 nactcctcctactg 562
|||| || |||||
Sbjct: 501 cactcttcatactg 514
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 31 catataatcccaagctcctc 50
>gb|BM323183.1|BM323183 PIC1_16_C08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 627
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 48 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 103
Score = 67.9 bits (34), Expect = 1e-009
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 423 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 482
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacctgaggg 592
|||| || ||||| | || || |||| ||||||||||||||
Sbjct: 483 cactcttcatactgccttcactggcgctctcaggaacctgaggg 526
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 13 catataatcccaagctcctc 32
>gb|BM323962.1|BM323962 PIC1_29_G01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 529
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 66 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 121
Score = 54.0 bits (27), Expect = 2e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 441 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 500
Query: 549 nactcctcctactg 562
|||| || |||||
Sbjct: 501 cactcttcatactg 514
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 31 catataatcccaagctcctc 50
>gb|BM324133.1|BM324133 PIC1_24_E11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 465
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 58 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 113
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 23 catataatcccaagctcctc 42
>gb|BM324556.1|BM324556 PIC1_32_G01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 532
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 59 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 114
Score = 65.9 bits (33), Expect = 4e-009
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 434 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 493
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacct 587
|||| || ||||| | || || |||| ||||||||||
Sbjct: 494 cactcttcatactgccttcactggcgctcccaggaacct 532
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 24 catataatcccaagctcctc 43
>gb|BM325132.1|BM325132 PIC1_40_D03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 399
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 59 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 114
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 24 catataatcccaagctcctc 43
>gb|BM325147.1|BM325147 PIC1_40_C04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 531
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 59 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 114
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 434 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 493
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacc 586
|||| || ||||| | || || |||| |||||||||
Sbjct: 494 cactcttcatactgccttcactggcgctcccaggaacc 531
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 24 catataatcccaagctcctc 43
>gb|BM325840.1|BM325840 PIC1_53_E01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 531
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 59 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 114
Score = 63.9 bits (32), Expect = 2e-008
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 434 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 493
Query: 549 nactcctcctactgnntncaatgncgctnccaggaacc 586
|||| || ||||| | || || |||| |||||||||
Sbjct: 494 cactcttcatactgccttcactggcgctcccaggaacc 531
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 24 catataatcccaagctcctc 43
>gb|BM325945.1|BM325945 PIC1_54_G06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 535
Score = 71.9 bits (36), Expect = 7e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 87 gatttccatatggccgaaggggaaggagaatggagctactccaagaattgtaggcg 142
||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 64 gattttcatatgactgaaggggaaggagaatggagctactccaaaaattctaggcg 119
Score = 61.9 bits (31), Expect = 7e-008
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 489 atggggctaccggagtcctattacaacaggctgtttcctcgtcagagtgtgcatctgttc 548
|||||| |||| || ||||||||||| ||||| ||||||||| | ||||| ||||| |||
Sbjct: 439 atggggttaccagaatcctattacaaaaggctttttcctcgtgaaagtgtccatctattc 498
Query: 549 nactcctcctactgnntncaatgncgctnccaggaac 585
|||| || ||||| | || || |||| ||||||||
Sbjct: 499 cactcttcatactgccttcactggcgctcccaggaac 535
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 catataatcccaagctcctc 57
||||||||||||||||||||
Sbjct: 29 catataatcccaagctcctc 48
>gb|CF756059.1|CF756059 DSAF1_3_F03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_3_F03_A011 5', mRNA sequence
Length = 620
Score = 67.9 bits (34), Expect = 1e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 105 ggggaaggagaatggagctactccaagaattgtaggcg 142
||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ggggaaggagaatggagctactccaagaattctaggcg 38
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 228 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 287
Query: 422 gt 423
||
Sbjct: 288 gt 289
>gb|BZ333147.1|BZ333147 hx56b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx56b02 5', DNA sequence
Length = 513
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 372 cagttcgtcctgaacgacctccccggcaacgacttcaacc 411
|||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 54 cagttcttcctgaacgacctgcccgggaacgacttcaacc 15
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 223 ccatggtcgtcgccgacctcggatgctctgcaggaccgaacacgctgctc 272
||||||||||||| |||||||| ||||| | || || ||||||||||||
Sbjct: 185 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctc 136
>gb|CL182327.1|CL182327 104_393_10897349_148_31921_341 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897349, DNA
sequence
Length = 665
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 372 cagttcgtcctgaacgacctccccggcaacgacttcaacc 411
|||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 462 cagttcttcctgaacgacctgcccgggaacgacttcaacc 501
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 223 ccatggtcgtcgccgacctcggatgctctgcaggaccgaacacgctgctc 272
||||||||||||| |||||||| ||||| | || || ||||||||||||
Sbjct: 331 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctc 380
>gb|CW477828.1|CW477828 fsbb001f235f19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235f19, DNA
sequence
Length = 580
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 372 cagttcgtcctgaacgacctccccggcaacgacttcaacc 411
|||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 331 cagttcttcctgaacgacctgcccgggaacgacttcaacc 292
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 223 ccatggtcgtcgccgacctcggatgctctgcaggaccgaacacgctgctc 272
||||||||||||| |||||||| ||||| | || || ||||||||||||
Sbjct: 462 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctc 413
>gb|BM325487.1|BM325487 PIC1_45_B09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 510
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 372 cagttcgtcctgaacgacctccccggcaacgacttcaacc 411
|||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 25 cagttcttcctgaacgacctgcccgggaacgacttcaacc 64
>gb|CD211984.1|CD211984 HS1_67_B09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_67_B09_A012 5', mRNA sequence
Length = 681
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 372 cagttcgtcctgaacgacctccccggcaacgacttcaacc 411
|||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 398 cagttcttcctgaacgacctgcccgggaacgacttcaacc 437
Score = 44.1 bits (22), Expect = 0.016
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 223 ccatggtcgtcgccgacctcggatgctctgcaggaccgaacacgctgctc 272
||||||||||||| |||||||| ||||| | || || ||||||||||||
Sbjct: 267 ccatggtcgtcgcggacctcggctgctcgtcggggcccaacacgctgctc 316
>gb|CL698595.2|CL698595 SP__Ba0032E06.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0032E06 3', DNA sequence
Length = 659
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 214 tccccagaaccatggtcgtcgccgacctcggatgctctgcaggaccgaacacgctgctct 273
|||||| |||||||||| | || ||||| ||||||||| | ||||| ||||| ||||||
Sbjct: 59 tccccaaaaccatggtcattgctgacctaggatgctcttcgggaccaaacacattgctct 118
Query: 274 tcatctc 280
|||||||
Sbjct: 119 tcatctc 125
>gb|CW257991.1|CW257991 104_723_11227634_116_35159_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227634, DNA
sequence
Length = 676
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 379 tcctgaacgacctccccggcaacgacttcaac 410
|||| ||||||||||||| |||||||||||||
Sbjct: 502 tcctcaacgacctccccgccaacgacttcaac 533
>gb|AW563321.1|AW563321 LG1_235_A01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 379 tcctgaacgacctccccggcaacgacttcaac 410
|||| ||||||||||||| |||||||||||||
Sbjct: 297 tcctcaacgacctccccgccaacgacttcaac 328
>gb|CF430037.1|CF430037 PH1_25_G12.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_G12_A002 5', mRNA sequence
Length = 714
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 379 tcctgaacgacctccccggcaacgacttcaac 410
|||| ||||||||||||| |||||||||||||
Sbjct: 361 tcctcaacgacctccccgccaacgacttcaac 392
>gb|CN144313.1|CN144313 WOUND1_21_A07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_21_A07_A002 5', mRNA sequence
Length = 792
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 379 tcctgaacgacctccccggcaacgacttcaac 410
|||| ||||||||||||| |||||||||||||
Sbjct: 340 tcctcaacgacctccccgccaacgacttcaac 371
>gb|CN145262.1|CN145262 WOUND1_27_F10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_27_F10_A002 5', mRNA sequence
Length = 787
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 379 tcctgaacgacctccccggcaacgacttcaac 410
|||| ||||||||||||| |||||||||||||
Sbjct: 376 tcctcaacgacctccccgccaacgacttcaac 407
>gb|CN149552.1|CN149552 WOUND1_63_B02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_B02_A002 5', mRNA sequence
Length = 782
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 379 tcctgaacgacctccccggcaacgacttcaac 410
|||| ||||||||||||| |||||||||||||
Sbjct: 356 tcctcaacgacctccccgccaacgacttcaac 387
>gb|AW563740.1|AW563740 LG1_248_A08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 164 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 223
Query: 422 gt 423
||
Sbjct: 224 gt 225
>gb|CD235025.1|CD235025 SS1_19_D07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_19_D07_A012 5', mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 362 cgtggagcttcagttcgtcctgaacgacctccccggcaacgacttcaaccacctgtttcg 421
|||||| ||||| ||| || |||| ||||| |||||||||||||| ||| | || |||||
Sbjct: 170 cgtggaacttcaattcttcttgaatgaccttcccggcaacgactttaacgaactatttcg 229
Query: 422 gt 423
||
Sbjct: 230 gt 231
>gb|CW286556.1|CW286556 104_764_11410940_116_35516_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410940, DNA
sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.063
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 386 cgacctccccggcaacgacttcaac 410
||||||| |||||||||||||||||
Sbjct: 154 cgacctctccggcaacgacttcaac 130
>gb|CW321720.1|CW321720 104_815_11475703_148_35940_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475703, DNA
sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.063
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 386 cgacctccccggcaacgacttcaac 410
||||||| |||||||||||||||||
Sbjct: 187 cgacctctccggcaacgacttcaac 163
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 253,917
Number of Sequences: 832831
Number of extensions: 253917
Number of successful extensions: 100906
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100687
Number of HSP's gapped (non-prelim): 192
length of query: 657
length of database: 491,359,669
effective HSP length: 19
effective length of query: 638
effective length of database: 475,535,880
effective search space: 303391891440
effective search space used: 303391891440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)