BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL10h01.xg.2.1
(610 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF428925.1|CF428925 PH1_18_D09.g1_A002 Phosphorous-defic... 589 e-166
gb|CX616545.1|CX616545 GABR1_28_C04.g1_A002 GA- or brassino... 589 e-166
gb|AW922606.1|AW922606 DG1_46_D12.b1_A002 Dark Grown 1 (DG1... 583 e-165
gb|CN140043.1|CN140043 OX1_33_E06.g1_A002 Oxidatively-stres... 581 e-164
gb|BG557476.1|BG557476 EM1_44_F08.b1_A002 Embryo 1 (EM1) So... 509 e-143
gb|BG102815.1|BG102815 RHIZ2_33_G06.b1_A003 Rhizome2 (RHIZ2... 474 e-132
gb|BE358216.1|BE358216 DG1_26_F09.b2_A002 Dark Grown 1 (DG1... 436 e-120
gb|CN131212.1|CN131212 RHOH1_46_C04.g1_A002 Acid- and alkal... 436 e-120
gb|CX609406.1|CX609406 ANR1_12_B05.g1_A002 Anaerobic roots ... 436 e-120
gb|CX616082.1|CX616082 GABR1_25_F01.g1_A002 GA- or brassino... 436 e-120
gb|CF429999.1|CF429999 PH1_25_F09.g1_A002 Phosphorous-defic... 432 e-119
gb|BE125256.1|BE125256 DG1_18_D01.b1_A002 Dark Grown 1 (DG1... 430 e-119
gb|CD236044.1|CD236044 SS1_25_C10.g1_A012 Salt-stressed see... 428 e-118
gb|CN144004.1|CN144004 WOUND1_19_D07.g1_A002 Wounded leaves... 428 e-118
gb|CX609287.1|CX609287 ANR1_11_F09.g1_A002 Anaerobic roots ... 428 e-118
gb|BG560670.1|BG560670 RHIZ2_58_C08.b1_A003 Rhizome2 (RHIZ2... 426 e-117
gb|CX610800.1|CX610800 ANR1_20_H05.g1_A002 Anaerobic roots ... 420 e-116
gb|BE359862.1|BE359862 DG1_58_G02.b2_A002 Dark Grown 1 (DG1... 410 e-113
gb|CF431052.1|CF431052 NIT1_4_H09.g1_A002 Nitrogen-deficien... 402 e-110
gb|CN151800.1|CN151800 WOUND1_77_E10.g1_A002 Wounded leaves... 389 e-106
gb|BM317539.1|BM317539 LG1_332_H05.b9_A002 Light Grown 1 (L... 343 1e-092
gb|AW564403.1|AW564403 LG1_292_B12.b1_A002 Light Grown 1 (L... 323 1e-086
gb|BE361634.1|BE361634 DG1_81_C01.b1_A002 Dark Grown 1 (DG1... 323 1e-086
gb|BG357198.1|BG357198 OV2_11_A05.b1_A002 Ovary 2 (OV2) Sor... 323 1e-086
gb|CW063399.1|CW063399 104_309_10521981_115_30140 Sorghum m... 305 3e-081
gb|CW130175.1|CW130175 104_512_11114967_148_34774_056 Sorgh... 305 3e-081
gb|CW292510.1|CW292510 104_772_11414127_116_35577_054 Sorgh... 305 3e-081
gb|CW292511.1|CW292511 104_772_11414127_148_35581_054 Sorgh... 305 3e-081
gb|BZ779779.1|BZ779779 ii34e07.g1 WGS-SbicolorF (DH5a methy... 285 2e-075
gb|CW130174.1|CW130174 104_512_11114967_116_34770_056 Sorgh... 285 2e-075
gb|CW306937.1|CW306937 104_792_11467109_116_35709_017 Sorgh... 285 2e-075
gb|CW451375.1|CW451375 fsbb001f191g19f0 Sorghum methylation... 285 2e-075
gb|BE354980.1|BE354980 DG1_10_F11.b1_A002 Dark Grown 1 (DG1... 281 4e-074
gb|CW299072.1|CW299072 104_781_11462920_116_35661_050 Sorgh... 276 2e-072
gb|CF427844.1|CF427844 PH1_11_F08.b1_A002 Phosphorous-defic... 274 9e-072
gb|AW283870.1|AW283870 LG1_260_H01.g1_A002 Light Grown 1 (L... 266 2e-069
gb|CW299073.1|CW299073 104_781_11462920_148_35657_050 Sorgh... 260 1e-067
gb|BF422262.1|BF422262 FM1_13_B11.b1_A003 Floral-Induced Me... 254 8e-066
gb|CD226724.1|CD226724 CCC1_47_H10.g1_A007 Callus culture/c... 254 8e-066
gb|CW219580.1|CW219580 104_653_11196859_116_37141_068 Sorgh... 250 1e-064
gb|CW457603.1|CW457603 fsbb001f203h22k0 Sorghum methylation... 238 5e-061
gb|CD428137.1|CD428137 ETH1_32_H05.g1_A002 Ethylene-treated... 236 2e-060
gb|CW415288.1|CW415288 fsbb001f115f07f0 Sorghum methylation... 212 3e-053
gb|BG560219.1|BG560219 RHIZ2_71_E10.b1_A003 Rhizome2 (RHIZ2... 202 3e-050
gb|CW166039.1|CW166039 104_574_11152832_116_36481_022 Sorgh... 163 2e-038
gb|CW201321.1|CW201321 104_627_11184511_116_37109_030 Sorgh... 163 2e-038
gb|CW201322.1|CW201322 104_627_11184511_148_37110_030 Sorgh... 163 2e-038
gb|CW289114.1|CW289114 104_767_11412305_116_35541_065 Sorgh... 163 2e-038
gb|CW325952.1|CW325952 104_821_11477963_116_36062_046 Sorgh... 163 2e-038
gb|CL148238.1|CL148238 104_328_10592951_116_31783_075 Sorgh... 161 9e-038
gb|CN143916.1|CN143916 WOUND1_19_D07.b1_A002 Wounded leaves... 161 9e-038
gb|CF429532.1|CF429532 PH1_22_C12.g1_A002 Phosphorous-defic... 147 1e-033
gb|CW325953.1|CW325953 104_821_11477963_148_36063_046 Sorgh... 139 3e-031
gb|CW063398.1|CW063398 104_309_10521981_114_30134 Sorghum m... 123 2e-026
gb|CW064790.1|CW064790 104_311_10522768_114_30122 Sorghum m... 111 8e-023
gb|CW301137.1|CW301137 104_784_11464043_116_36253_034 Sorgh... 88 1e-015
gb|CX609326.1|CX609326 ANR1_12_B05.b1_A002 Anaerobic roots ... 86 4e-015
gb|CN131128.1|CN131128 RHOH1_46_C04.b1_A002 Acid- and alkal... 84 2e-014
gb|CL177479.1|CL177479 104_384_10893857_116_31916_305 Sorgh... 82 7e-014
gb|CW044997.1|CW044997 104_281_10509293_114_30236 Sorghum m... 82 7e-014
gb|CL183147.1|CL183147 104_395_10897985_116_31918_209 Sorgh... 76 4e-012
gb|CW128842.1|CW128842 104_510_11114239_116_34758_022 Sorgh... 76 4e-012
gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation... 76 4e-012
gb|CX609201.1|CX609201 ANR1_11_F09.b1_A002 Anaerobic roots ... 74 2e-011
gb|BZ333054.1|BZ333054 hx32e04.b1 WGS-SbicolorF (JM107 adap... 70 3e-010
gb|CW117366.1|CW117366 104_493_11107618_148_34613_041 Sorgh... 70 3e-010
gb|CW173021.1|CW173021 104_584_11156617_148_36546_007 Sorgh... 70 3e-010
gb|CW393419.1|CW393419 fsbb001f080h11k0 Sorghum methylation... 70 3e-010
gb|BI140973.1|BI140973 IP1_41_F02.b1_A002 Immature pannicle... 70 3e-010
gb|CD429366.1|CD429366 ETH1_4_E12.b1_A002 Ethylene-treated ... 70 3e-010
gb|CD429502.1|CD429502 ETH1_4_E12.g1_A002 Ethylene-treated ... 70 3e-010
gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorgh... 68 1e-009
gb|CL154550.1|CL154550 104_339_10781491_114_31371_355 Sorgh... 66 4e-009
gb|CL154551.1|CL154551 104_339_10781491_116_31372_355 Sorgh... 66 4e-009
gb|CW032387.1|CW032387 104_261_10501349_114_30363 Sorghum m... 66 4e-009
gb|CW171233.1|CW171233 104_581_11155631_116_36521_082 Sorgh... 66 4e-009
gb|CW183379.1|CW183379 104_599_11164586_148_36677_011 Sorgh... 66 4e-009
gb|CW360230.1|CW360230 fsbb001f028d16f0 Sorghum methylation... 66 4e-009
gb|CW465154.1|CW465154 fsbb001f215m11f0 Sorghum methylation... 66 4e-009
gb|AW677106.1|AW677106 DG1_4_H09.b1_A002 Dark Grown 1 (DG1)... 66 4e-009
gb|CW236276.1|CW236276 104_692_11215531_116_37501_078 Sorgh... 64 2e-008
gb|AW677089.1|AW677089 DG1_4_B10.b1_A002 Dark Grown 1 (DG1)... 60 3e-007
gb|CL171167.1|CL171167 104_372_10889229_148_31778_285 Sorgh... 58 1e-006
gb|CL183819.1|CL183819 104_396_10898428_114_31923_268 Sorgh... 58 1e-006
gb|CW178657.1|CW178657 104_592_11159684_116_36620_072 Sorgh... 58 1e-006
gb|CW183688.1|CW183688 104_599_11164747_148_36676_070 Sorgh... 58 1e-006
gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorgh... 58 1e-006
gb|CW369263.1|CW369263 fsbb001f043j14f0 Sorghum methylation... 58 1e-006
gb|CW417037.1|CW417037 fsbb001f117n19f0 Sorghum methylation... 58 1e-006
gb|BI075202.1|BI075202 IP1_17_D05.b1_A002 Immature pannicle... 58 1e-006
gb|CD211845.1|CD211845 HS1_64_C08.g1_A012 Heat-shocked seed... 58 1e-006
gb|CD225014.1|CD225014 CCC1_37_D01.g1_A007 Callus culture/c... 58 1e-006
gb|CD229214.1|CD229214 CCC1_13_B02.g1_A007 Callus culture/c... 58 1e-006
gb|CF427438.1|CF427438 PH1_1_H06.g1_A002 Phosphorous-defici... 58 1e-006
gb|CF433664.1|CF433664 NIT1_28_D06.g1_A002 Nitrogen-deficie... 58 1e-006
gb|CN136100.1|CN136100 OX1_40_F12.g1_A002 Oxidatively-stres... 58 1e-006
gb|CN136666.1|CN136666 OX1_44_D01.g1_A002 Oxidatively-stres... 58 1e-006
gb|CN141940.1|CN141940 WOUND1_2_G05.g1_A002 Wounded leaves ... 58 1e-006
gb|CL165468.1|CL165468 104_360_10808639_114_31818_239 Sorgh... 54 2e-005
gb|CW138453.1|CW138453 104_528_11134704_116_34891_094 Sorgh... 54 2e-005
gb|CW207390.1|CW207390 104_636_11188111_148_36969_024 Sorgh... 54 2e-005
gb|CW262595.1|CW262595 104_730_11230163_116_35225_044 Sorgh... 54 2e-005
gb|CW262596.1|CW262596 104_730_11230163_148_35221_044 Sorgh... 54 2e-005
gb|CW360174.1|CW360174 fsbb001f028c08k0 Sorghum methylation... 54 2e-005
gb|CW370183.1|CW370183 fsbb001f044p12k0 Sorghum methylation... 54 2e-005
gb|CW396733.1|CW396733 fsbb001f085f03f0 Sorghum methylation... 54 2e-005
gb|AW922665.1|AW922665 DG1_45_C01.b1_A002 Dark Grown 1 (DG1... 54 2e-005
gb|CD227647.1|CD227647 CCC1_52_D04.g1_A007 Callus culture/c... 54 2e-005
gb|CN125727.1|CN125727 RHOH1_12_H07.g1_A002 Acid- and alkal... 54 2e-005
gb|CD213004.1|CD213004 HS1_17_C02.g1_A012 Heat-shocked seed... 52 6e-005
gb|CD231870.1|CD231870 SS1_30_G08.g1_A012 Salt-stressed see... 50 2e-004
gb|CD236653.1|CD236653 SS1_35_H04.g1_A012 Salt-stressed see... 50 2e-004
gb|CL165204.1|CL165204 104_360_10808428_116_31819_028 Sorgh... 48 0.001
gb|CW105399.1|CW105399 104_474_11012877_116_34452_085 Sorgh... 48 0.001
gb|CW169284.1|CW169284 104_579_11154593_116_36499_075 Sorgh... 48 0.001
gb|BZ780402.1|BZ780402 ii39f06.g1 WGS-SbicolorF (DH5a methy... 46 0.004
gb|CW165329.1|CW165329 104_573_11152448_116_36469_022 Sorgh... 46 0.004
gb|CW266820.1|CW266820 104_736_11232639_148_35285_052 Sorgh... 46 0.004
gb|CW307219.1|CW307219 104_795_11468026_116_36059_043 Sorgh... 46 0.004
gb|CW307220.1|CW307220 104_795_11468026_148_36060_043 Sorgh... 46 0.004
gb|CW392542.1|CW392542 fsbb001f079d12f0 Sorghum methylation... 46 0.004
gb|CW442061.1|CW442061 fsbb001f161i13f0 Sorghum methylation... 46 0.004
gb|CW053111.1|CW053111 104_293_10515781_114_30184 Sorghum m... 44 0.015
gb|CW075171.1|CW075171 104_355_10806807_114_31832_327 Sorgh... 44 0.015
gb|CW253378.1|CW253378 104_717_11225053_116_35110_063 Sorgh... 44 0.015
gb|CW281372.1|CW281372 104_757_11408141_116_35463_031 Sorgh... 44 0.015
gb|BF481712.1|BF481712 FM1_21_D12.b1_A003 Floral-Induced Me... 44 0.015
gb|BZ779778.1|BZ779778 ii34e07.b1 WGS-SbicolorF (DH5a methy... 42 0.059
gb|CW034966.1|CW034966 104_265_10502869_114_30378 Sorghum m... 42 0.059
gb|CW055609.1|CW055609 104_297_10517224_115_30173 Sorghum m... 42 0.059
gb|CW107151.1|CW107151 104_477_11096411_148_34470_044 Sorgh... 42 0.059
gb|CW110080.1|CW110080 104_482_11103487_148_34515_022 Sorgh... 42 0.059
gb|CW253379.1|CW253379 104_717_11225053_148_35106_063 Sorgh... 42 0.059
gb|CW281373.1|CW281373 104_757_11408141_148_35459_031 Sorgh... 42 0.059
gb|BG947846.1|BG947846 IP1_5_H11.b1_A002 Immature pannicle ... 42 0.059
gb|CN140358.1|CN140358 OX1_35_E01.g1_A002 Oxidatively-stres... 42 0.059
gb|CX622346.1|CX622346 GABR1_63_A06.g2_A002 GA- or brassino... 42 0.059
gb|BZ331031.1|BZ331031 hw03h02.b1 WGS-SbicolorF (JM107 adap... 40 0.23
gb|CW219058.1|CW219058 104_652_11196517_116_37460_049 Sorgh... 40 0.23
gb|CW367626.1|CW367626 fsbb001f041d04f0 Sorghum methylation... 40 0.23
gb|CW426513.1|CW426513 fsbb001f137p03f0 Sorghum methylation... 40 0.23
gb|BE355801.1|BE355801 DG1_11_E05.b1_A002 Dark Grown 1 (DG1... 40 0.23
>gb|CF428925.1|CF428925 PH1_18_D09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_D09_A002 5', mRNA sequence
Length = 751
Score = 589 bits (297), Expect = e-166
Identities = 434/478 (90%), Gaps = 9/478 (1%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 85 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 138
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 139 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 195
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 196 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 255
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 256 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 315
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 316 catccgcgggaactccgccggcaccgtctcatgcttctacctttcttccggcgacggcga 375
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 376 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 435
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggtt 506
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 436 caacaccaacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacctgtggtt 495
Query: 507 cgacccctccgccgactaccacacctacaccatcatctggaaccngaccaacatcctg 564
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 496 cgacccggccgccgactaccacacctacaccatcatctggaaccctacgaacatcctg 553
>gb|CX616545.1|CX616545 GABR1_28_C04.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_28_C04_A002 5', mRNA sequence
Length = 725
Score = 589 bits (297), Expect = e-166
Identities = 434/478 (90%), Gaps = 9/478 (1%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 61 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 114
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 115 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 171
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 172 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 231
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 232 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 291
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 292 catccgcgggaactccgccggcaccgtctcatgcttctacctttcttccggcgacggcga 351
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 352 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 411
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggtt 506
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 412 caacaccaacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacctgtggtt 471
Query: 507 cgacccctccgccgactaccacacctacaccatcatctggaaccngaccaacatcctg 564
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 472 cgacccggccgccgactaccacacctacaccatcatctggaaccctacgaacatcctg 529
>gb|AW922606.1|AW922606 DG1_46_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 521
Score = 583 bits (294), Expect = e-165
Identities = 423/464 (91%), Gaps = 9/464 (1%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 56 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 109
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 110 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 166
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 167 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 226
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 227 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 286
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 287 catccgcgggaactccgccggcaccgtctcatgcttctacctttcttccggcgacggcga 346
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 347 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 406
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggtt 506
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 407 caacaccaacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacctgtggtt 466
Query: 507 cgacccctccgccgactaccacacctacaccatcatctggaacc 550
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 467 cgacccggccgccgactaccacacctacaccatcatctggaacc 510
>gb|CN140043.1|CN140043 OX1_33_E06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_E06_A002 5', mRNA sequence
Length = 800
Score = 581 bits (293), Expect = e-164
Identities = 433/478 (90%), Gaps = 9/478 (1%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 61 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 114
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 115 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 171
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 172 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 231
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 232 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 291
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 292 catccgcgggaactccgccggcaccgtctcatgcttctacctttcttccggcgacggcga 351
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 352 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 411
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggtt 506
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||
Sbjct: 412 caacaccaacgtgtgggccaacggcgacagcaagaaggagcaccagttcgacctgtggtt 471
Query: 507 cgacccctccgccgactaccacacctacaccatcatctggaaccngaccaacatcctg 564
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 472 cgacccggccgccgactaccacacctacaccatcatctggaaccctacgaacatcctg 529
>gb|BG557476.1|BG557476 EM1_44_F08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 473
Score = 509 bits (257), Expect = e-143
Identities = 380/419 (90%), Gaps = 9/419 (2%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 64 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 117
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 118 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 174
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 175 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 234
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 235 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 294
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 295 catccgcgggaactccgccggcaccgtctcatgcttctacctttcttccggcgacggcga 354
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 355 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 414
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggt 505
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 415 caacaccaacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacctgtggt 473
>gb|BG102815.1|BG102815 RHIZ2_33_G06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 463
Score = 474 bits (239), Expect = e-132
Identities = 371/413 (89%), Gaps = 9/413 (2%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | ||||||||||||||| |||||| ||||||| ||
Sbjct: 60 catggcaccgcgttctctg---ggagtgctcgccgtcgcg---ctcgcgctcttgcaggc 113
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 114 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 170
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 171 gggttacgacagctcgggccagcaggtggtgatgctcagcctcgaccagcactcgggcgc 230
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 231 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 290
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct: 291 catccgggggaactccgccggcaccgtctcatgcttctacctttcatctggcgacggcga 350
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 351 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 410
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacc 499
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 411 caacaccaacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacc 463
>gb|BE358216.1|BE358216 DG1_26_F09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 436 bits (220), Expect = e-120
Identities = 346/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 195 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 254
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 255 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 310
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 311 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 370
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 371 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 430
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 431 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 490
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 491 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 550
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 551 tcatctggaacccgaccaacatcct 575
>gb|CN131212.1|CN131212 RHOH1_46_C04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_C04_A002 5', mRNA sequence
Length = 806
Score = 436 bits (220), Expect = e-120
Identities = 346/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 190 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 249
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 250 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 305
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 306 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 365
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 425
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 426 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 485
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 486 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 545
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 546 tcatctggaacccgaccaacatcct 570
>gb|CX609406.1|CX609406 ANR1_12_B05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_B05_A002 5', mRNA sequence
Length = 826
Score = 436 bits (220), Expect = e-120
Identities = 346/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 188 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 247
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 248 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 303
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 304 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 363
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 364 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 423
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 424 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 483
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 484 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 543
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 544 tcatctggaacccgaccaacatcct 568
>gb|CX616082.1|CX616082 GABR1_25_F01.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_25_F01_A002 5', mRNA sequence
Length = 643
Score = 436 bits (220), Expect = e-120
Identities = 346/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 182 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 241
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 242 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 297
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 298 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 357
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 358 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 417
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 418 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 477
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 478 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 537
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 538 tcatctggaacccgaccaacatcct 562
>gb|CF429999.1|CF429999 PH1_25_F09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_F09_A002 5', mRNA sequence
Length = 764
Score = 432 bits (218), Expect = e-119
Identities = 344/383 (89%), Gaps = 5/383 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 196 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 255
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 256 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 311
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 312 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 371
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 372 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 431
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 432 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 491
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 492 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 551
Query: 539 tcatctggaaccngaccaacatc 561
|||||||||||| ||||||||||
Sbjct: 552 tcatctggaacccgaccaacatc 574
>gb|BE125256.1|BE125256 DG1_18_D01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 424
Score = 430 bits (217), Expect = e-119
Identities = 337/375 (89%), Gaps = 9/375 (2%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 56 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 109
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 110 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 166
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 167 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 226
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 227 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 286
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct: 287 catccgcgggaactccgccggcaccggctcatgcttctacctttcttccggcgacggcga 346
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 347 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 406
Query: 447 gaacaccaacgtgtg 461
||||||||||||||
Sbjct: 407 caacaccaacgtgtg 421
>gb|CD236044.1|CD236044 SS1_25_C10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_25_C10_A012 5', mRNA sequence
Length = 681
Score = 428 bits (216), Expect = e-118
Identities = 345/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 202 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 261
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 262 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 317
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 318 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 377
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 437
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 438 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 497
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 498 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 557
Query: 539 tcatctggaaccngaccaacatcct 563
|| ||||||||| ||||||||||||
Sbjct: 558 tcgtctggaacccgaccaacatcct 582
>gb|CN144004.1|CN144004 WOUND1_19_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_D07_A002 5', mRNA sequence
Length = 804
Score = 428 bits (216), Expect = e-118
Identities = 345/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 187 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 246
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 247 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 302
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 303 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 362
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 363 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcctgg 422
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 423 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 482
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 483 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 542
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 543 tcatctggaacccgaccaacatcct 567
>gb|CX609287.1|CX609287 ANR1_11_F09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_F09_A002 5', mRNA sequence
Length = 810
Score = 428 bits (216), Expect = e-118
Identities = 345/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 172 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 231
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||| ||||||||||||||||||| |
Sbjct: 232 gctcaacctcgacc-gcagctccggcgc---cggcttcgactccaaggagcagtacctct 287
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 288 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 347
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 348 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 407
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 408 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 467
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 468 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 527
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 528 tcatctggaacccgaccaacatcct 552
>gb|BG560670.1|BG560670 RHIZ2_58_C08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 452
Score = 426 bits (215), Expect = e-117
Identities = 350/393 (89%), Gaps = 9/393 (2%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | ||||||||||||||| |||||| ||||||| ||
Sbjct: 69 catggcaccgcgttctctg---ggagtgctcgccgtcgcg---ctcgcgctcttgcaggc 122
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 123 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 179
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 180 gggttacgacagctcgggccagcaggtggtgatgctcagcctcgaccagcactcgggcgc 239
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 240 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 299
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||
Sbjct: 300 catccgggggaactccgccggcaccgtctcatgcttctacctttcatctggcgacggcga 359
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgct 446
||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct: 360 cgggcacgacgagatcgacatggagttcatgggcaacgccaccggtcagccggtggtgct 419
Query: 447 gaacaccaacgtgtgggccagcggcgacggcaa 479
||||||||| ||||||||| ||||||||||||
Sbjct: 420 caacaccaacatgtgggccaacggcgacggcaa 452
>gb|CX610800.1|CX610800 ANR1_20_H05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_20_H05_A002 5', mRNA sequence
Length = 676
Score = 420 bits (212), Expect = e-116
Identities = 344/385 (89%), Gaps = 5/385 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 176 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 235
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 236 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 291
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 292 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 351
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 352 gcttctacctttgttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 411
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||| ||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 412 gcaacgccacggggcaaccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 471
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 472 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 531
Query: 539 tcatctggaaccngaccaacatcct 563
|||||||||||| ||||||||||||
Sbjct: 532 tcatctggaacccgaccaacatcct 556
>gb|BE359862.1|BE359862 DG1_58_G02.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 410 bits (207), Expect = e-113
Identities = 339/380 (89%), Gaps = 5/380 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| ||| |||| |||
Sbjct: 185 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcatgtggcgat 244
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct: 245 gctcaacctcgacc-gcagctccggc---gccggcttcaactccaaggagcagtacctct 300
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 301 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 360
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 361 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagctcatgg 420
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 421 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 480
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 481 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 540
Query: 539 tcatctggaaccngaccaac 558
|||||||||||| |||||||
Sbjct: 541 tcatctggaacccgaccaac 560
>gb|CF431052.1|CF431052 NIT1_4_H09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_H09_A002 5', mRNA sequence
Length = 363
Score = 402 bits (203), Expect = e-110
Identities = 305/337 (90%), Gaps = 9/337 (2%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 29 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 82
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 83 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 139
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 140 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 199
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 200 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 259
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctacctctcttccggcgacggcga 386
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 260 catccgcgggaactccgccggcaccgtctcatgcttctacctttcttccggcgacggcga 319
Query: 387 cgggcgcgacgagatcgacatggagttcatgggcaac 423
||||| |||||||||||||||||||||||||||||||
Sbjct: 320 cgggcacgacgagatcgacatggagttcatgggcaac 356
>gb|CN151800.1|CN151800 WOUND1_77_E10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_77_E10_A002 5', mRNA sequence
Length = 650
Score = 389 bits (196), Expect = e-106
Identities = 329/370 (88%), Gaps = 5/370 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| | ||| |||||||| |||
Sbjct: 285 gttcagcacggacggcaccgtccgcaccaactacgacgagcccggcgcgcaggtggcgat 344
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||| |||||||||||||||| |||||||||||| |
Sbjct: 345 gctcaacctcgacc-gcagctccggc---gccggcttcaactccagggagcagtacctct 400
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 401 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 460
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 461 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 520
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | |||||||||| |||||| ||||| ||||||||||||| |||||||||||
Sbjct: 521 gcaacgccacggggcagccggaggtgctcaacacaaacgtgtgggccaacggcgacggca 580
Query: 479 agaaggagcaccagttcgacctctggttcgacccctccgccgactaccacacctacacca 538
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 581 agaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacacctacacca 640
Query: 539 tcatctggaa 548
||||||||||
Sbjct: 641 tcatctggaa 650
>gb|BM317539.1|BM317539 LG1_332_H05.b9_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 343 bits (173), Expect = 1e-092
Identities = 291/327 (88%), Gaps = 5/327 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 191 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 250
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 251 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 306
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 307 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 366
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 426
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggca 478
||||| | | ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 427 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggca 486
Query: 479 agaaggagcaccagttcgacctctggt 505
|||||||||||||||||||||| ||||
Sbjct: 487 agaaggagcaccagttcgacctgtggt 513
>gb|AW564403.1|AW564403 LG1_292_B12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 546
Score = 323 bits (163), Expect = 1e-086
Identities = 235/259 (90%)
Strand = Plus / Plus
Query: 291 gtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcac 350
|||||| ||||||||||||||| || ||||||||||||||| || ||||||||||||||
Sbjct: 16 gtacctctacggcgagttcagcatccagatgaagctcatccccggcaactccgccggcac 75
Query: 351 cgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgga 410
|||| | | |||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 76 cgtcacctccttctacctcacctccggcgacggcgacgggcacgacgagatcgacatgga 135
Query: 411 gttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcgg 470
||||||||||||||| ||||| | || || ||||| ||||||||||||||||||| |||
Sbjct: 136 gttcatgggcaactccagcggcgaccccgtcgtgctcaacaccaacgtgtgggccaacgg 195
Query: 471 cgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacac 530
||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 196 cgacggcaagaaggagcaccagttctacctctggttcgacccggccgccgacttccacac 255
Query: 531 ctacaccatcatctggaac 549
|||||||||||||||||||
Sbjct: 256 ctacaccatcatctggaac 274
>gb|BE361634.1|BE361634 DG1_81_C01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 577
Score = 323 bits (163), Expect = 1e-086
Identities = 235/259 (90%)
Strand = Plus / Plus
Query: 291 gtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcac 350
|||||| ||||||||||||||| || ||||||||||||||| || ||||||||||||||
Sbjct: 311 gtacctctacggcgagttcagcatccagatgaagctcatccccggcaactccgccggcac 370
Query: 351 cgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgga 410
|||| | | |||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 371 cgtcacctccttctacctcacctccggcgacggcgacgggcacgacgagatcgacatgga 430
Query: 411 gttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcgg 470
||||||||||||||| ||||| | || || ||||| ||||||||||||||||||| |||
Sbjct: 431 gttcatgggcaactccagcggcgaccccgtcgtgctcaacaccaacgtgtgggccaacgg 490
Query: 471 cgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacac 530
||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 491 cgacggcaagaaggagcaccagttctacctctggttcgacccggccgccgacttccacac 550
Query: 531 ctacaccatcatctggaac 549
|||||||||||||||||||
Sbjct: 551 ctacaccatcatctggaac 569
>gb|BG357198.1|BG357198 OV2_11_A05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 525
Score = 323 bits (163), Expect = 1e-086
Identities = 235/259 (90%)
Strand = Plus / Plus
Query: 291 gtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcac 350
|||||| ||||||||||||||| || ||||||||||||||| || ||||||||||||||
Sbjct: 219 gtacctctacggcgagttcagcatccagatgaagctcatccccggcaactccgccggcac 278
Query: 351 cgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgga 410
|||| | | |||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 cgtcacctccttctacctcacctccggcgacggcgacgggcacgacgagatcgacatgga 338
Query: 411 gttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcgg 470
||||||||||||||| ||||| | || || ||||| ||||||||||||||||||| |||
Sbjct: 339 gttcatgggcaactccagcggcgaccccgtcgtgctcaacaccaacgtgtgggccaacgg 398
Query: 471 cgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacac 530
||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 399 cgacggcaagaaggagcaccagttctacctctggttcgacccggccgccgacttccacac 458
Query: 531 ctacaccatcatctggaac 549
|||||||||||||||||||
Sbjct: 459 ctacaccatcatctggaac 477
>gb|CW063399.1|CW063399 104_309_10521981_115_30140 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521981, DNA
sequence
Length = 604
Score = 305 bits (154), Expect = 3e-081
Identities = 250/280 (89%), Gaps = 9/280 (3%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 217 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 270
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 271 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 327
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 387
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 388 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 447
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctac 366
|||||| ||||||||||||||||||||||| |||||||||
Sbjct: 448 catccgcgggaactccgccggcaccgtctcatgcttctac 487
>gb|CW130175.1|CW130175 104_512_11114967_148_34774_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114967, DNA
sequence
Length = 690
Score = 305 bits (154), Expect = 3e-081
Identities = 250/280 (89%), Gaps = 9/280 (3%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 297 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 350
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 351 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 407
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 408 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 467
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 468 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 527
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctac 366
|||||| ||||||||||||||||||||||| |||||||||
Sbjct: 528 catccgcgggaactccgccggcaccgtctcatgcttctac 567
>gb|CW292510.1|CW292510 104_772_11414127_116_35577_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414127, DNA
sequence
Length = 732
Score = 305 bits (154), Expect = 3e-081
Identities = 250/280 (89%), Gaps = 9/280 (3%)
Strand = Plus / Plus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 369 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 422
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 423 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 479
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 480 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 539
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 540 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 599
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctac 366
|||||| ||||||||||||||||||||||| |||||||||
Sbjct: 600 catccgcgggaactccgccggcaccgtctcatgcttctac 639
>gb|CW292511.1|CW292511 104_772_11414127_148_35581_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414127, DNA
sequence
Length = 606
Score = 305 bits (154), Expect = 3e-081
Identities = 250/280 (89%), Gaps = 9/280 (3%)
Strand = Plus / Minus
Query: 87 catggcaccgcgttctctgctggcagtgctcgccgtcgccgccctcgcgttcttgcacgc 146
||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||
Sbjct: 468 catggcaccgcgttctctg---ggagtgctcgccgtcgcc---ctcgcgctcttgcaggc 415
Query: 147 cgcctcggccaagtcgtcgtggcttgacaggaggttcaccacggacggcaccgtccgcac 206
||||||||| ||||| | |||||| | | |||||||||||||||||||||||||
Sbjct: 414 cgcctcggcgaagtcct---ggcttggcgccaagttcaccacggacggcaccgtccgcga 358
Query: 207 gggatacgacgattcgggccagcaggtggtgatgctccgcctcgaccagcactccggcgc 266
|||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 357 gggatacgacagttccggccagcaggtggtgatgctcagcctcgaccagcactccggcgc 298
Query: 267 tgccggcttcaactccaaggagcagtacctttacggcgagttcagcgtcgagatgaagct 326
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 297 cgccggcttcaactccaaggagcagtacctctacggcgagttcagcatcgagatgaagct 238
Query: 327 catccgggggaactccgccggcaccgtctcgtgcttctac 366
|||||| ||||||||||||||||||||||| |||||||||
Sbjct: 237 catccgcgggaactccgccggcaccgtctcatgcttctac 198
Score = 113 bits (57), Expect = 2e-023
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct: 81 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaacgccacc 22
Query: 430 gggcagccggtggtgct 446
|| ||||||||||||||
Sbjct: 21 ggtcagccggtggtgct 5
>gb|BZ779779.1|BZ779779 ii34e07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii34e07, DNA sequence
Length = 670
Score = 285 bits (144), Expect = 2e-075
Identities = 182/195 (93%)
Strand = Plus / Plus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct: 26 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaacgccacc 85
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 86 ggtcagccggtggtgctcaacaccaacgtgtgggccaacggcgacggcaagaaggagcac 145
Query: 490 cagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaac 549
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 146 cagttcgacctgtggttcgacccggccgccgactaccacacctacaccatcatctggaac 205
Query: 550 cngaccaacatcctg 564
| || |||||||||
Sbjct: 206 cctacgaacatcctg 220
>gb|CW130174.1|CW130174 104_512_11114967_116_34770_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114967, DNA
sequence
Length = 581
Score = 285 bits (144), Expect = 2e-075
Identities = 182/195 (93%)
Strand = Plus / Minus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct: 245 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaacgccacc 186
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 ggtcagccggtggtgctcaacaccaacgtgtgggccaacggcgacggcaagaaggagcac 126
Query: 490 cagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaac 549
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 125 cagttcgacctgtggttcgacccggccgccgactaccacacctacaccatcatctggaac 66
Query: 550 cngaccaacatcctg 564
| || |||||||||
Sbjct: 65 cctacgaacatcctg 51
Score = 283 bits (143), Expect = 9e-075
Identities = 176/187 (94%)
Strand = Plus / Minus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 548 gttcaccacggacggcaccgtccgcgagggatacgacagttccggccagcaggtggtgat 489
Query: 240 gctccgcctcgaccagcactccggcgctgccggcttcaactccaaggagcagtaccttta 299
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 488 gctcagcctcgaccagcactccggcgccgccggcttcaactccaaggagcagtacctcta 429
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 428 cggcgagttcagcatcgagatgaagctcatccgcgggaactccgccggcaccgtctcatg 369
Query: 360 cttctac 366
|||||||
Sbjct: 368 cttctac 362
>gb|CW306937.1|CW306937 104_792_11467109_116_35709_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11467109, DNA
sequence
Length = 702
Score = 285 bits (144), Expect = 2e-075
Identities = 182/195 (93%)
Strand = Plus / Plus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct: 306 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaacgccacc 365
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 366 ggtcagccggtggtgctcaacaccaacgtgtgggccaacggcgacggcaagaaggagcac 425
Query: 490 cagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaac 549
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 426 cagttcgacctgtggttcgacccggccgccgactaccacacctacaccatcatctggaac 485
Query: 550 cngaccaacatcctg 564
| || |||||||||
Sbjct: 486 cctacgaacatcctg 500
Score = 283 bits (143), Expect = 9e-075
Identities = 176/187 (94%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 3 gttcaccacggacggcaccgtccgcgagggatacgacagttccggccagcaggtggtgat 62
Query: 240 gctccgcctcgaccagcactccggcgctgccggcttcaactccaaggagcagtaccttta 299
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 63 gctcagcctcgaccagcactccggcgccgccggcttcaactccaaggagcagtacctcta 122
Query: 300 cggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtg 359
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 123 cggcgagttcagcatcgagatgaagctcatccgcgggaactccgccggcaccgtctcatg 182
Query: 360 cttctac 366
|||||||
Sbjct: 183 cttctac 189
>gb|CW451375.1|CW451375 fsbb001f191g19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191g19, DNA
sequence
Length = 624
Score = 285 bits (144), Expect = 2e-075
Identities = 182/195 (93%)
Strand = Plus / Plus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct: 4 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaacgccacc 63
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 64 ggtcagccggtggtgctcaacaccaacgtgtgggccaacggcgacggcaagaaggagcac 123
Query: 490 cagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaac 549
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 cagttcgacctgtggttcgacccggccgccgactaccacacctacaccatcatctggaac 183
Query: 550 cngaccaacatcctg 564
| || |||||||||
Sbjct: 184 cctacgaacatcctg 198
>gb|BE354980.1|BE354980 DG1_10_F11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 281 bits (142), Expect = 4e-074
Identities = 254/288 (88%), Gaps = 5/288 (1%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 195 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 254
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 255 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 310
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 311 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 370
Query: 359 gcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgg 418
|||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 371 gcttctacctttcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgg 430
Query: 419 gcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggcca 466
||||| | | ||||||||||||||||| ||||| |||||||||||||
Sbjct: 431 gcaacgccacggggcagccggtggtgctcaacacaaacgtgtgggcca 478
>gb|CW299072.1|CW299072 104_781_11462920_116_35661_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462920, DNA
sequence
Length = 655
Score = 276 bits (139), Expect = 2e-072
Identities = 180/194 (92%)
Strand = Plus / Plus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
||||| |||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct: 203 tcttctggcgacggcgacgggcatgacgagatcgacatggagttcatgggcaacgccacg 262
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 263 gggcagccggtggtgctcaacacaaacgtgtgggccaacggcgacggcaagaaggagcac 322
Query: 490 cagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaac 549
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 cagttcgacctgtggttcgacccggccgccgactaccacacctacaccatcatctggaac 382
Query: 550 cngaccaacatcct 563
| ||||||||||||
Sbjct: 383 ccgaccaacatcct 396
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 337 aactccgccggcaccgtctcgtgcttctac 366
|||||||||||||||||||| |||||||||
Sbjct: 8 aactccgccggcaccgtctcctgcttctac 37
>gb|CF427844.1|CF427844 PH1_11_F08.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_11_F08_A002 3', mRNA sequence
Length = 634
Score = 274 bits (138), Expect = 9e-072
Identities = 176/189 (93%)
Strand = Plus / Minus
Query: 375 cggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggca 434
||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||
Sbjct: 269 cggcgacggcgacgggcatgacgagatcgacatggagttcatgggcaacgccacggggca 210
Query: 435 gccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagtt 494
|||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 209 gccggtggtgctcaacacaaacgtgtgggccaacggcgacggcaagaaggagcaccagtt 150
Query: 495 cgacctctggttcgacccctccgccgactaccacacctacaccatcatctggaaccngac 554
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 149 cgacctgtggttcgacccggccgccgactaccacacctacaccatcatctggaacccgac 90
Query: 555 caacatcct 563
|||||||||
Sbjct: 89 caacatcct 81
>gb|AW283870.1|AW283870 LG1_260_H01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 521
Score = 266 bits (134), Expect = 2e-069
Identities = 197/218 (90%)
Strand = Plus / Minus
Query: 291 gtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcac 350
|||||| ||||||||||||||| || ||||||||||||||| || ||||||||||||||
Sbjct: 218 gtacctctacggcgagttcagcatccagatgaagctcatccccggcaactccgccggcac 159
Query: 351 cgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgga 410
|||| | | |||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 158 cgtcacctccttctacctcacctccggcgacggcgacgggcacgacgagatcgacatgga 99
Query: 411 gttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcgg 470
||||||||||||||| ||||| | || || ||||| ||||||||||||||||||| |||
Sbjct: 98 gttcatgggcaactccagcggcgaccccgtcgtgctcaacaccaacgtgtgggccaacgg 39
Query: 471 cgacggcaagaaggagcaccagttcgacctctggttcg 508
||||||||||||||||||||||||| ||||||||||||
Sbjct: 38 cgacggcaagaaggagcaccagttctacctctggttcg 1
>gb|CW299073.1|CW299073 104_781_11462920_148_35657_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462920, DNA
sequence
Length = 623
Score = 260 bits (131), Expect = 1e-067
Identities = 169/182 (92%)
Strand = Plus / Minus
Query: 382 ggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagcgggcagccggtg 441
|||||||||| |||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 623 ggcgacgggcatgacgagatcgacatggagttcatgggcaacgccacggggcagccggtg 564
Query: 442 gtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctc 501
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 gtgctcaacacaaacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacctg 504
Query: 502 tggttcgacccctccgccgactaccacacctacaccatcatctggaaccngaccaacatc 561
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 tggttcgacccggccgccgactaccacacctacaccatcatctggaacccgaccaacatc 444
Query: 562 ct 563
||
Sbjct: 443 ct 442
>gb|BF422262.1|BF422262 FM1_13_B11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 592
Score = 254 bits (128), Expect = 8e-066
Identities = 212/240 (88%)
Strand = Plus / Plus
Query: 290 agtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggca 349
||||||| | |||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 242 agtacctcttcggcgagttcagcgtcgagatgaagctcgtcgccggcaactccgccggca 301
Query: 350 ccgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgg 409
| ||| | | ||||||||| | |||||||| ||||||| || |||||||||||||||||
Sbjct: 302 ctgtcacctccttctacctgacgtccggcgagggcgacgagcacgacgagatcgacatgg 361
Query: 410 agttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcg 469
|||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 362 agttcatgggcaactccagcgggtcgccgacggtgctcaacaccaacgtgtgggccagcg 421
Query: 470 gcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccaca 529
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||
Sbjct: 422 gcgacggcaagaaggagcaccagttctacctgtggttcgacccggccgccgacttccaca 481
>gb|CD226724.1|CD226724 CCC1_47_H10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_47_H10_A007 5', mRNA sequence
Length = 621
Score = 254 bits (128), Expect = 8e-066
Identities = 212/240 (88%)
Strand = Plus / Plus
Query: 290 agtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggca 349
||||||| | |||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 280 agtacctcttcggcgagttcagcgtcgagatgaagctcgtcgccggcaactccgccggca 339
Query: 350 ccgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgg 409
| ||| | | ||||||||| | |||||||| ||||||| || |||||||||||||||||
Sbjct: 340 ctgtcacctccttctacctgacgtccggcgagggcgacgagcacgacgagatcgacatgg 399
Query: 410 agttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcg 469
|||||||||||||||| |||||| |||| |||||| ||||||||||||||||||||||
Sbjct: 400 agttcatgggcaactccagcgggtcgccgacggtgctcaacaccaacgtgtgggccagcg 459
Query: 470 gcgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccaca 529
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||
Sbjct: 460 gcgacggcaagaaggagcaccagttctacctgtggttcgacccggccgccgacttccaca 519
>gb|CW219580.1|CW219580 104_653_11196859_116_37141_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196859, DNA
sequence
Length = 525
Score = 250 bits (126), Expect = 1e-064
Identities = 165/178 (92%)
Strand = Plus / Minus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | | | |
Sbjct: 178 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaccgccacc 119
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
|| || ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 118 ggtcacccggtggtgctcaactccaacgtgtgggccaacggcgacggcaagaaggagcac 59
Query: 490 cagttcgacctctggttcgacccctccgccgactaccacacctacaccatcatctgga 547
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 58 cagttcgacctgtggttcgacccggccgccgactaccacacctacaccatcatctgga 1
Score = 198 bits (100), Expect = 4e-049
Identities = 160/180 (88%)
Strand = Plus / Minus
Query: 185 ccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgatgctcc 244
||||||||||||| |||||| |||||||||| ||| ||||||||||||||||| ||
Sbjct: 476 ccacggacggcacagtccgcgagggatacgacagttccagccagcaggtggtgatgatca 417
Query: 245 gcctcgaccagcactccggcgctgccggcttcaactccaaggagcagtacctttacggcg 304
||||||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 416 gcctcgaccagcagtcaggcgcagccggcttcaactccaaggagcagtacctctaaggcg 357
Query: 305 agttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtgcttct 364
|||||||| | |||||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct: 356 agttcagcattgagatgaagctcatgcgcgggaactccgccggcacagtctcatgcttct 297
>gb|CW457603.1|CW457603 fsbb001f203h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203h22, DNA
sequence
Length = 431
Score = 238 bits (120), Expect = 5e-061
Identities = 138/144 (95%)
Strand = Plus / Plus
Query: 223 ggccagcaggtggtgatgctccgcctcgaccagcactccggcgctgccggcttcaactcc 282
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 28 ggccagcaggtggtgatgctcagcctcgaccagcactccggcgccgccggcttcaactcc 87
Query: 283 aaggagcagtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactcc 342
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 88 aaggagcagtacctctacggcgagttcagcatcgagatgaagctcatccgcgggaactcc 147
Query: 343 gccggcaccgtctcgtgcttctac 366
|||||||||||||| |||||||||
Sbjct: 148 gccggcaccgtctcatgcttctac 171
Score = 220 bits (111), Expect = 1e-055
Identities = 135/143 (94%)
Strand = Plus / Plus
Query: 370 tcttccggcgacggcgacgggcgcgacgagatcgacatggagttcatgggcaactcgagc 429
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct: 288 tcttccggcgacggcgacgggcacgacgagatcgacatggagttcatgggcaacgccacc 347
Query: 430 gggcagccggtggtgctgaacaccaacgtgtgggccagcggcgacggcaagaaggagcac 489
|| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 348 ggtcagccggtggtgctcaacaccaacgtgtgggccaacggcgacggcaagaaggagcac 407
Query: 490 cagttcgacctctggttcgaccc 512
||||||||||| |||||||||||
Sbjct: 408 cagttcgacctgtggttcgaccc 430
>gb|CD428137.1|CD428137 ETH1_32_H05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_32_H05_A002 5', mRNA sequence
Length = 772
Score = 236 bits (119), Expect = 2e-060
Identities = 158/170 (92%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 394 gacgagatcgacatggagttcatgggcaactcgagcgggcagccggtggtgctgaacacc 453
|||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct: 543 gacgagatcgacatggagttcatgggcaacgccacggggcagccggtggtgctcaacaca 602
Query: 454 aacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcgacccc 513
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 603 aacgtgtgggccaacggcgacggcaagaaggagcaccagttcgacctgtggttcgacccg 662
Query: 514 tccgccgactaccacacctacaccatcatctggaaccngaccaacatcct 563
|||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 663 gccgccgactaccacacctacaccatcatctggaacccga-caacatcct 711
Score = 145 bits (73), Expect = 5e-033
Identities = 152/175 (86%), Gaps = 5/175 (2%)
Strand = Plus / Plus
Query: 193 ggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgatgctccgcctcgac 252
|||||||||||||| |||||||| || ||| |||||||| ||||||| |||||||
Sbjct: 98 ggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgatgctcaacctcgac 157
Query: 253 cagca-ctccggcgctgccggcttcaactccaaggagcagtacctttacggcgagttcag 311
| ||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||
Sbjct: 158 c-gcagctccggcgctg---gcttcaactccaaggagcagtacctctacggccagttcag 213
Query: 312 cgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgtgcttctac 366
|||| ||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 214 cgtccagatgaagctcatccccggcaactccgccggcaccgtctcctgcttctac 268
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcac 206
||||| |||||||||||||||||||||
Sbjct: 509 gttcagcacggacggcaccgtccgcac 535
>gb|CW415288.1|CW415288 fsbb001f115f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f115f07, DNA
sequence
Length = 325
Score = 212 bits (107), Expect = 3e-053
Identities = 142/154 (92%)
Strand = Plus / Plus
Query: 411 gttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcgg 470
||||||||||||| | | ||| |||||||||||||| ||||||||||||||||||| |||
Sbjct: 1 gttcatgggcaacgccaccggtcagccggtggtgctcaacaccaacgtgtgggccaacgg 60
Query: 471 cgacggcaagaaggagcaccagttcgacctctggttcgacccctccgccgactaccacac 530
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 61 cgacggcaagaaggagcaccagttcgacctgtggttcgacccggccgccgactaccacac 120
Query: 531 ctacaccatcatctggaaccngaccaacatcctg 564
|||||||||||||||||||| || |||||||||
Sbjct: 121 ctacaccatcatctggaaccctacgaacatcctg 154
>gb|BG560219.1|BG560219 RHIZ2_71_E10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 202 bits (102), Expect = 3e-050
Identities = 162/182 (89%)
Strand = Plus / Plus
Query: 291 gtacctttacggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcac 350
|||||| ||||||||||||||| || ||||||||||||||| || ||||||||||||||
Sbjct: 320 gtacctctacggcgagttcagcatccagatgaagctcatccccggcaactccgccggcac 379
Query: 351 cgtctcgtgcttctacctctcttccggcgacggcgacgggcgcgacgagatcgacatgga 410
|||| | | |||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 cgtcacctccttctacctcacctccggcgacggcgacgggcacgacgagatcgacatgga 439
Query: 411 gttcatgggcaactcgagcgggcagccggtggtgctgaacaccaacgtgtgggccagcgg 470
||||||||||||||| ||||| | || || ||||| ||||||||||||||||||| |||
Sbjct: 440 gttcatgggcaactccagcggcgaccccgtcgtgctcaacaccaacgtgtgggccaacgg 499
Query: 471 cg 472
||
Sbjct: 500 cg 501
>gb|CW166039.1|CW166039 104_574_11152832_116_36481_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152832, DNA
sequence
Length = 616
Score = 163 bits (82), Expect = 2e-038
Identities = 164/188 (87%), Gaps = 5/188 (2%)
Strand = Plus / Minus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 341 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 282
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 281 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 226
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 225 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 166
Query: 359 gcttctac 366
||||||||
Sbjct: 165 gcttctac 158
>gb|CW201321.1|CW201321 104_627_11184511_116_37109_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184511, DNA
sequence
Length = 681
Score = 163 bits (82), Expect = 2e-038
Identities = 164/188 (87%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 477 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 536
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 537 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 592
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 593 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 652
Query: 359 gcttctac 366
||||||||
Sbjct: 653 gcttctac 660
>gb|CW201322.1|CW201322 104_627_11184511_148_37110_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184511, DNA
sequence
Length = 705
Score = 163 bits (82), Expect = 2e-038
Identities = 164/188 (87%), Gaps = 5/188 (2%)
Strand = Plus / Minus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 293 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 234
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 233 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 178
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 177 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 118
Query: 359 gcttctac 366
||||||||
Sbjct: 117 gcttctac 110
>gb|CW289114.1|CW289114 104_767_11412305_116_35541_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412305, DNA
sequence
Length = 663
Score = 163 bits (82), Expect = 2e-038
Identities = 164/188 (87%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 320 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 379
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 380 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 435
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 436 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 495
Query: 359 gcttctac 366
||||||||
Sbjct: 496 gcttctac 503
>gb|CW325952.1|CW325952 104_821_11477963_116_36062_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477963, DNA
sequence
Length = 633
Score = 163 bits (82), Expect = 2e-038
Identities = 164/188 (87%), Gaps = 5/188 (2%)
Strand = Plus / Minus
Query: 180 gttcaccacggacggcaccgtccgcacgggatacgacgattcgggccagcaggtggtgat 239
||||| ||||||||||||||||||||| |||||||| || ||| |||||||| |||
Sbjct: 337 gttcagcacggacggcaccgtccgcaccaactacgacgagtccggcgcgcaggtggcgat 278
Query: 240 gctccgcctcgaccagca-ctccggcgctgccggcttcaactccaaggagcagtaccttt 298
|||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||| |
Sbjct: 277 gctcaacctcgacc-gcagctccggcgc---cggcttcaactccaaggagcagtacctct 222
Query: 299 acggcgagttcagcgtcgagatgaagctcatccgggggaactccgccggcaccgtctcgt 358
||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||| |
Sbjct: 221 acggccagttcagcgtccagatgaagctcatccccggcaactccgccggcaccgtctcct 162
Query: 359 gcttctac 366
||||||||
Sbjct: 161 gcttctac 154
>gb|CL148238.1|CL148238 104_328_10592951_116_31783_075 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592951, DNA
sequence
Length = 325
Score = 161 bits (81), Expect = 9e-038
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 449 acaccaacgtgtgggccagcggcgacggcaagaaggagcaccagttcgacctctggttcg 508
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 acaccaacgtgtgggccaacggcgacggcaagaaggagcaccagttctacctctggttcg 60
Query: 509 acccctccgccgactaccacacctacaccatcatctggaac 549
|||| ||||||||| |||||||||||||||||||||||||
Sbjct: 61 acccggccgccgacttccacacctacaccatcatctggaac 101
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,024
Number of Sequences: 832831
Number of extensions: 192024
Number of successful extensions: 63795
Number of sequences better than 0.5: 142
Number of HSP's better than 0.5 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63413
Number of HSP's gapped (non-prelim): 335
length of query: 610
length of database: 491,359,669
effective HSP length: 19
effective length of query: 591
effective length of database: 475,535,880
effective search space: 281041705080
effective search space used: 281041705080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)