BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum m... 143 2e-032
gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation... 143 2e-032
gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation... 129 3e-028
gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum m... 105 4e-021
gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum m... 105 4e-021
gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorgh... 105 4e-021
gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation... 105 4e-021
gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum m... 103 1e-020
gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum m... 101 6e-020
gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorgh... 101 6e-020
gb|CW089052.1|CW089052 104_434_10948479_114_32601_060 Sorgh... 88 9e-016
gb|CW472155.1|CW472155 fsbb001f226o15k0 Sorghum methylation... 88 9e-016
gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorgh... 80 2e-013
gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation... 80 2e-013
gb|CW021763.1|CW021763 104_160_10431448_5_30005 Sorghum met... 54 1e-005
gb|CW067037.1|CW067037 104_314_10524024_115_30127 Sorghum m... 54 1e-005
gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorgh... 54 1e-005
gb|CW155127.1|CW155127 104_557_11145969_116_36359_039 Sorgh... 54 1e-005
gb|CW264940.1|CW264940 104_734_11231586_148_35262_079 Sorgh... 54 1e-005
gb|CW454037.1|CW454037 fsbb001f198e20f0 Sorghum methylation... 54 1e-005
gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (L... 54 1e-005
gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1... 54 1e-005
gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1... 54 1e-005
gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1... 54 1e-005
gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1... 54 1e-005
gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-defici... 54 1e-005
gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-defic... 54 1e-005
gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkal... 54 1e-005
gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkal... 54 1e-005
gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkal... 54 1e-005
gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkal... 54 1e-005
gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stres... 46 0.003
gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation... 44 0.012
>gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 734
Score = 143 bits (72), Expect = 2e-032
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 222 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 163
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 162 cttcaaggagaccgggagcttctccaagaagttcacgccag 122
Score = 105 bits (53), Expect = 4e-021
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 521 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 462
Query: 125 ttcatcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngc 184
||||||||||||||||| || ||||||||| ||||||||| |||| | ||
Sbjct: 461 ttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgcttcaagtgcagc 402
Query: 185 cactgcaa 192
||||||||
Sbjct: 401 cactgcaa 394
>gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k18, DNA
sequence
Length = 711
Score = 143 bits (72), Expect = 2e-032
Identities = 92/101 (91%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 173 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 232
Query: 265 cttcaagnngaccgggagcttctccaagaacttcacgccag 305
||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 233 cttcaaggagaccgggagcttctccaagaagttcacgccag 273
Score = 101 bits (51), Expect = 6e-020
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||
Sbjct: 519 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 578
Query: 396 gccagaaaacnnngtacccgc 416
|||||||||| ||||||||
Sbjct: 579 gccagaaaacagtgtacccgc 599
>gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 642
Score = 129 bits (65), Expect = 3e-028
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagct 264
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 551 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 610
Query: 265 cttcaagnngaccgggagcttctccaagaa 294
||||||| |||||||||||||||||||||
Sbjct: 611 cttcaaggagaccgggagcttctccaagaa 640
Score = 105 bits (53), Expect = 4e-021
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 252 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 311
Query: 125 ttcatcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngc 184
||||||||||||||||| || ||||||||| ||||||||| |||| | ||
Sbjct: 312 ttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgcttcaagtgcagc 371
Query: 185 cactgcaa 192
||||||||
Sbjct: 372 cactgcaa 379
>gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 576
Score = 105 bits (53), Expect = 4e-021
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 342 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 401
Query: 125 ttcatcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngc 184
||||||||||||||||| || ||||||||| ||||||||| |||| | ||
Sbjct: 402 ttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgcttcaagtgcagc 461
Query: 185 cactgcaa 192
||||||||
Sbjct: 462 cactgcaa 469
>gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591452, DNA
sequence
Length = 679
Score = 105 bits (53), Expect = 4e-021
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 524 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 583
Query: 125 ttcatcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngc 184
||||||||||||||||| || ||||||||| ||||||||| |||| | ||
Sbjct: 584 ttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgcttcaagtgcagc 643
Query: 185 cactgcaa 192
||||||||
Sbjct: 644 cactgcaa 651
>gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 613
Score = 105 bits (53), Expect = 4e-021
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 383 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 442
Query: 125 ttcatcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngc 184
||||||||||||||||| || ||||||||| ||||||||| |||| | ||
Sbjct: 443 ttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgcttcaagtgcagc 502
Query: 185 cactgcaa 192
||||||||
Sbjct: 503 cactgcaa 510
>gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 483
Score = 105 bits (53), Expect = 4e-021
Identities = 104/128 (81%)
Strand = Plus / Minus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 357 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 298
Query: 125 ttcatcgacctcctcacnnnnnacnnnnccatctaccataagacatgcntcaannncngc 184
||||||||||||||||| || ||||||||| ||||||||| |||| | ||
Sbjct: 297 ttcatcgacctcctcacggccgacggcgtcatctaccacaagacatgcttcaagtgcagc 238
Query: 185 cactgcaa 192
||||||||
Sbjct: 237 cactgcaa 230
Score = 77.8 bits (39), Expect = 9e-013
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 205 gatgtgcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcag 262
||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 58 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcag 1
>gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 633
Score = 103 bits (52), Expect = 1e-020
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 65 ggcaccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccac 124
||||||||||||||||||||| |||||||||||||||| |||||||||||| |||
Sbjct: 526 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 585
Query: 125 ttcatcgacctcctcac 141
|||||||||||||||||
Sbjct: 586 ttcatcgacctcctcac 602
>gb|CW042854.1|CW042854 104_276_10507318_116_30489 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 631
Score = 101 bits (51), Expect = 6e-020
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||
Sbjct: 368 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 309
Query: 396 gccagaaaacnnngtacccgc 416
|||||||||| ||||||||
Sbjct: 308 gccagaaaacagtgtacccgc 288
>gb|CW131966.1|CW131966 104_515_11115958_116_34797_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 553
Score = 101 bits (51), Expect = 6e-020
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 336 caagggccccaagcaagctgtcgtctgcattttctggtacccnngataagtncgcagcat 395
||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||
Sbjct: 415 caagggccccaagcaagctatcgtctgcattttctggtactcaggataagtgtgcagcat 356
Query: 396 gccagaaaacnnngtacccgc 416
|||||||||| ||||||||
Sbjct: 355 gccagaaaacagtgtacccgc 335
Score = 42.1 bits (21), Expect = 0.047
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 237 tgtactgcaagacccacttcgagcagctcttca 269
|||||||||||| |||||||| |||||| ||||
Sbjct: 64 tgtactgcaagatccacttcgggcagctgttca 32
>gb|CW089052.1|CW089052 104_434_10948479_114_32601_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948479, DNA
sequence
Length = 700
Score = 87.7 bits (44), Expect = 9e-016
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 131 ccatgtctttcaccggcacgcaggacaagtgcaaaacctgcgacaagacggtccacttca 72
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 71 tcgacctcctcac 59
>gb|CW472155.1|CW472155 fsbb001f226o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f226o15, DNA
sequence
Length = 702
Score = 87.7 bits (44), Expect = 9e-016
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 69 ccatgtctttcaccggcncgcaggacaagtgcacnnnntgcgacaagaccnnccacttca 128
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 300 ccatgtctttcaccggcacgcaggacaagtgcaaaacctgcgacaagacggtccacttca 241
Query: 129 tcgacctcctcac 141
|||||||||||||
Sbjct: 240 tcgacctcctcac 228
>gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 736
Score = 79.8 bits (40), Expect = 2e-013
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 210 gcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagctcttca 269
|||||||||| |||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct: 74 gcagctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttca 133
Query: 270 agnngaccgggagcttctccaagaa 294
|| ||| |||| ||||||||||||
Sbjct: 134 aggagacagggaccttctccaagaa 158
Score = 44.1 bits (22), Expect = 0.012
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 347 agcaagctgtcgtctgcattttctggtacccnngataagtncgcagcatgccagaaaac 405
|||||||| || |||||||| ||||| || | ||||| | |||||| |||||||||||
Sbjct: 472 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaac 530
>gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 739
Score = 79.8 bits (40), Expect = 2e-013
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 210 gcagctactcctccatggacgnnnnnctgtactgcaagacccacttcgagcagctcttca 269
|||||||||| |||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct: 147 gcagctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttca 206
Query: 270 agnngaccgggagcttctccaagaa 294
|| ||| |||| ||||||||||||
Sbjct: 207 aggagacagggaccttctccaagaa 231
Score = 44.1 bits (22), Expect = 0.012
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 347 agcaagctgtcgtctgcattttctggtacccnngataagtncgcagcatgccagaaaac 405
|||||||| || |||||||| ||||| || | ||||| | |||||| |||||||||||
Sbjct: 545 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaac 603
>gb|CW021763.1|CW021763 104_160_10431448_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431448, DNA
sequence
Length = 420
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 120 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 164
>gb|CW067037.1|CW067037 104_314_10524024_115_30127 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524024, DNA
sequence
Length = 543
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 363 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 319
>gb|CW094129.1|CW094129 104_457_11000145_116_37477_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000145, DNA
sequence
Length = 690
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 91 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 47
>gb|CW155127.1|CW155127 104_557_11145969_116_36359_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145969, DNA
sequence
Length = 740
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 475 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 431
>gb|CW264940.1|CW264940 104_734_11231586_148_35262_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231586, DNA
sequence
Length = 712
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 290 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 334
>gb|CW454037.1|CW454037 fsbb001f198e20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e20, DNA
sequence
Length = 763
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 258 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 302
>gb|AW287022.2|AW287022 LG1_264_E07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 511
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 310 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 354
>gb|AW922579.1|AW922579 DG1_45_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 629
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 4 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 48
>gb|BE360223.1|BE360223 DG1_62_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 310 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 354
>gb|BE360326.1|BE360326 DG1_62_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 14 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 58
>gb|BE360993.1|BE360993 DG1_68_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 22 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 66
>gb|CF427262.1|CF427262 PH1_4_F06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_F06_A002 5', mRNA sequence
Length = 567
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 455 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 499
>gb|CF430008.1|CF430008 PH1_25_B05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_B05_A002 5', mRNA sequence
Length = 723
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 713 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 669
>gb|CN127798.1|CN127798 RHOH1_25_D05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 3', mRNA sequence
Length = 720
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 88 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 132
>gb|CN127879.1|CN127879 RHOH1_25_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_25_D05_A002 5', mRNA sequence
Length = 692
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 230 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 274
>gb|CN129542.1|CN129542 RHOH1_36_B03.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 3', mRNA sequence
Length = 819
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 172 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 216
>gb|CN129628.1|CN129628 RHOH1_36_B03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B03_A002 5', mRNA sequence
Length = 784
Score = 54.0 bits (27), Expect = 1e-005
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccgggag 282
|||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 274 gtactgcaaggcccatttcgagcagctgttcaaggagaccgggag 318
>gb|CN140719.1|CN140719 OX1_46_B10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_B10_A002 5', mRNA sequence
Length = 544
Score = 46.1 bits (23), Expect = 0.003
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 238 gtactgcaagacccacttcgagcagctcttcaagnngaccg 278
|||||||||| |||| ||||||||||| |||||| |||||
Sbjct: 219 gtactgcaaggcccatttcgagcagctgttcaaggagaccg 259
>gb|CW385134.1|CW385134 fsbb001f068h22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 671
Score = 44.1 bits (22), Expect = 0.012
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 347 agcaagctgtcgtctgcattttctggtacccnngataagtncgcagcatgccagaaaac 405
|||||||| || |||||||| ||||| || | ||||| | |||||| |||||||||||
Sbjct: 534 agcaagctatcatctgcattctctggaactcaagataaatgcgcagcctgccagaaaac 476
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,627
Number of Sequences: 832831
Number of extensions: 52627
Number of successful extensions: 12510
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12460
Number of HSP's gapped (non-prelim): 50
length of query: 494
length of database: 491,359,669
effective HSP length: 19
effective length of query: 475
effective length of database: 475,535,880
effective search space: 225879543000
effective search space used: 225879543000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)