BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum m... 113 1e-023
gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation... 113 1e-023
gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation... 100 2e-019
gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum m... 68 6e-010
gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum m... 68 6e-010
gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum m... 68 6e-010
gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorgh... 68 6e-010
gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation... 68 6e-010
gb|CW089052.1|CW089052 104_434_10948479_114_32601_060 Sorgh... 60 2e-007
gb|CW472155.1|CW472155 fsbb001f226o15k0 Sorghum methylation... 60 2e-007
gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorgh... 56 2e-006
gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation... 56 2e-006
>gb|CW071272.1|CW071272 104_323_10591451_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 734
Score = 113 bits (57), Expect = 1e-023
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct: 222 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 163
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| |||||||||||||||||||| ||||||||||
Sbjct: 162 cttcaaggagaccgggagcttctccaagaagttcacgccag 122
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 521 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 462
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 461 ttcatcgacctcctcac 445
>gb|CW497105.1|CW497105 fsbb001f289k18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289k18, DNA
sequence
Length = 711
Score = 113 bits (57), Expect = 1e-023
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct: 173 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 232
Query: 263 cttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||| |||||||||||||||||||| ||||||||||
Sbjct: 233 cttcaaggagaccgggagcttctccaagaagttcacgccag 273
>gb|CW376890.1|CW376890 fsbb001f054p19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 642
Score = 99.6 bits (50), Expect = 2e-019
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagct 262
||||| | ||||||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct: 551 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagct 610
Query: 263 cttcaagnnnaccgggagcttctccaagaa 292
||||||| ||||||||||||||||||||
Sbjct: 611 cttcaaggagaccgggagcttctccaagaa 640
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 252 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 311
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 312 ttcatcgacctcctcac 328
>gb|CW042853.1|CW042853 104_276_10507318_114_30483 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507318, DNA
sequence
Length = 576
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 342 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 401
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 402 ttcatcgacctcctcac 418
>gb|CW071274.1|CW071274 104_323_10591451_116_30454 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591451, DNA
sequence
Length = 633
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 526 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 585
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 586 ttcatcgacctcctcac 602
>gb|CW071276.1|CW071276 104_323_10591452_116_30437 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591452, DNA
sequence
Length = 679
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 524 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 583
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 584 ttcatcgacctcctcac 600
>gb|CW131967.1|CW131967 104_515_11115958_148_34793_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115958, DNA
sequence
Length = 613
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 383 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 442
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 443 ttcatcgacctcctcac 459
>gb|CW376891.1|CW376891 fsbb001f054p19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054p19, DNA
sequence
Length = 483
Score = 67.9 bits (34), Expect = 6e-010
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 63 ggcaccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncac 122
||||||||||||||||||||| ||| | |||||||||| ||||||||| ||
Sbjct: 357 ggcaccatgtctttcaccggcacgcaggacaagtgcacggcgtgcgacaagaccgtccat 298
Query: 123 ttcatcgacctcctcac 139
|||||||||||||||||
Sbjct: 297 ttcatcgacctcctcac 281
Score = 54.0 bits (27), Expect = 1e-005
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 203 gatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttc 254
||||| | ||||||| |||||||||| |||||||||||||||||||||
Sbjct: 58 gatgtgcagctactcttccatggacggtgtgctgtactgcaagacccacttc 7
>gb|CW089052.1|CW089052 104_434_10948479_114_32601_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948479, DNA
sequence
Length = 700
Score = 60.0 bits (30), Expect = 2e-007
Identities = 59/73 (80%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| |||||||
Sbjct: 131 ccatgtctttcaccggcacgcaggacaagtgcaaaacctgcgacaagacggtccacttca 72
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 71 tcgacctcctcac 59
>gb|CW472155.1|CW472155 fsbb001f226o15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f226o15, DNA
sequence
Length = 702
Score = 60.0 bits (30), Expect = 2e-007
Identities = 59/73 (80%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| |||||||
Sbjct: 300 ccatgtctttcaccggcacgcaggacaagtgcaaaacctgcgacaagacggtccacttca 241
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 240 tcgacctcctcac 228
>gb|CW146141.1|CW146141 104_539_11138833_116_34988_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11138833, DNA
sequence
Length = 736
Score = 56.0 bits (28), Expect = 2e-006
Identities = 66/82 (80%)
Strand = Plus / Plus
Query: 211 gctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagctcttcaagn 270
||||||| |||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 77 gctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttcaagg 136
Query: 271 nnaccgggagcttctccaagaa 292
|| |||| ||||||||||||
Sbjct: 137 agacagggaccttctccaagaa 158
>gb|CW385133.1|CW385133 fsbb001f068h22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068h22, DNA
sequence
Length = 739
Score = 56.0 bits (28), Expect = 2e-006
Identities = 66/82 (80%)
Strand = Plus / Plus
Query: 211 gctactcctccatggacgnnnnnctgtactgcaagacccacttcnngcagctcttcaagn 270
||||||| |||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 150 gctactcttccatggacggtgtcctgtactgcaagacgcactttgaacagctcttcaagg 209
Query: 271 nnaccgggagcttctccaagaa 292
|| |||| ||||||||||||
Sbjct: 210 agacagggaccttctccaagaa 231
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,830
Number of Sequences: 832831
Number of extensions: 29830
Number of successful extensions: 6892
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6861
Number of HSP's gapped (non-prelim): 22
length of query: 393
length of database: 491,359,669
effective HSP length: 19
effective length of query: 374
effective length of database: 475,535,880
effective search space: 177850419120
effective search space used: 177850419120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)