BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ24c04.pg.2.1
(448 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL159497.1|CL159497 104_349_10804291_114_31381_115 Sorgh... 58 7e-007
gb|CW137101.1|CW137101 104_523_11119113_148_34864_041 Sorgh... 58 7e-007
gb|CW223946.1|CW223946 104_660_11203186_116_37447_047 Sorgh... 58 7e-007
gb|CW228007.1|CW228007 104_667_11206124_116_37246_070 Sorgh... 58 7e-007
gb|CW228008.1|CW228008 104_667_11206124_148_37245_070 Sorgh... 58 7e-007
gb|CW333020.1|CW333020 104_830_11481720_148_36038_082 Sorgh... 58 7e-007
gb|CW784462.1|CW784462 SP__Bb0024I23.r SP__Bb Sorghum propi... 58 7e-007
gb|CF480054.1|CF480054 POL1_63_A12.g1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480166.1|CF480166 POL1_64_D03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480333.1|CF480333 POL1_65_D03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480637.1|CF480637 POL1_67_A06.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480649.1|CF480649 POL1_67_C02.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480745.1|CF480745 POL1_67_D07.g1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480969.1|CF480969 POL1_69_E05.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF480980.1|CF480980 POL1_69_F07.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF481103.1|CF481103 POL1_70_B02.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF481147.1|CF481147 POL1_70_F07.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF481333.1|CF481333 POL1_71_H03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF481889.1|CF481889 POL1_75_A04.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF482067.1|CF482067 POL1_76_H03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF482434.1|CF482434 POL1_7_A01.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF482607.1|CF482607 POL1_8_B05.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF482799.1|CF482799 POL1_9_F05.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF483096.1|CF483096 POL1_11_F05.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF483137.1|CF483137 POL1_12_B09.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF483197.1|CF483197 POL1_12_H10.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF483265.1|CF483265 POL1_21_B07.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF483416.1|CF483416 POL1_22_D07.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF483683.1|CF483683 POL1_24_B02.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF483974.1|CF483974 POL1_2_G02.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF483976.1|CF483976 POL1_2_G04.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF483980.1|CF483980 POL1_2_G08.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF484108.1|CF484108 POL1_3_E05.b1_A002 Pollen Sorghum bi... 58 7e-007
gb|CF484397.1|CF484397 POL1_25_C05.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF484704.1|CF484704 POL1_27_A11.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF485051.1|CF485051 POL1_29_D08.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF485186.1|CF485186 POL1_30_A03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF485259.1|CF485259 POL1_30_A04.g1_A002 Pollen Sorghum b... 58 7e-007
gb|CF486352.1|CF486352 POL1_37_E10.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF486491.1|CF486491 POL1_38_B03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF486514.1|CF486514 POL1_38_D08.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF486657.1|CF486657 POL1_39_A11.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF486682.1|CF486682 POL1_39_D02.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF487484.1|CF487484 POL1_44_C08.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF487538.1|CF487538 POL1_44_H12.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF487622.1|CF487622 POL1_44_H12.g1_A002 Pollen Sorghum b... 58 7e-007
gb|CF487790.1|CF487790 POL1_46_A03.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF487995.1|CF487995 POL1_47_D10.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488022.1|CF488022 POL1_47_G06.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488299.1|CF488299 POL1_49_A10.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488330.1|CF488330 POL1_49_E12.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488469.1|CF488469 POL1_50_E04.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488600.1|CF488600 POL1_51_B05.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488631.1|CF488631 POL1_51_E07.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF488821.1|CF488821 POL1_52_A06.g1_A002 Pollen Sorghum b... 58 7e-007
gb|CF489097.1|CF489097 POL1_54_H09.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF489352.1|CF489352 POL1_57_C07.b1_A002 Pollen Sorghum b... 58 7e-007
gb|CF486664.1|CF486664 POL1_39_B06.b1_A002 Pollen Sorghum b... 56 3e-006
gb|CW333019.1|CW333019 104_830_11481720_116_36037_082 Sorgh... 50 2e-004
gb|CF483169.1|CF483169 POL1_12_E10.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF484606.1|CF484606 POL1_26_H05.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF484901.1|CF484901 POL1_28_F03.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF485026.1|CF485026 POL1_29_A12.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF485229.1|CF485229 POL1_30_E09.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF485409.1|CF485409 POL1_31_H02.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF486512.1|CF486512 POL1_38_D06.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF486987.1|CF486987 POL1_41_C03.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF487513.1|CF487513 POL1_44_F08.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF487722.1|CF487722 POL1_45_C01.g1_A002 Pollen Sorghum b... 50 2e-004
gb|CF487815.1|CF487815 POL1_46_C05.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CF488005.1|CF488005 POL1_47_E12.b1_A002 Pollen Sorghum b... 50 2e-004
gb|CD229161.1|CD229161 CCC1_13_B09.b1_A007 Callus culture/c... 44 0.011
gb|CL193690.1|CL193690 104_417_10941112_116_32282_056 Sorgh... 40 0.17
gb|CW173323.1|CW173323 104_584_11156780_148_36547_066 Sorgh... 40 0.17
gb|CW186891.1|CW186891 104_605_11166803_116_36717_048 Sorgh... 40 0.17
gb|CW189689.1|CW189689 104_611_11174097_116_36749_047 Sorgh... 40 0.17
gb|CW203498.1|CW203498 104_631_11186052_116_37095_046 Sorgh... 40 0.17
gb|CW203499.1|CW203499 104_631_11186052_148_37094_046 Sorgh... 40 0.17
gb|CW459897.1|CW459897 fsbb001f206n22k0 Sorghum methylation... 40 0.17
gb|CW500654.1|CW500654 fsbb001f296b04k0 Sorghum methylation... 40 0.17
gb|CF489435.1|CF489435 POL1_57_C07.g1_A002 Pollen Sorghum b... 40 0.17
>gb|CL159497.1|CL159497 104_349_10804291_114_31381_115 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804291, DNA
sequence
Length = 647
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 307 tgccggactcgctggtgaggcggatggagaaggggcccttga 266
>gb|CW137101.1|CW137101 104_523_11119113_148_34864_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119113, DNA
sequence
Length = 668
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 311 tgccggactcgctggtgaggcggatggagaaggggcccttga 270
>gb|CW223946.1|CW223946 104_660_11203186_116_37447_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203186, DNA
sequence
Length = 713
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 570 tgccggactcgctggtgaggcggatggagaaggggcccttga 611
>gb|CW228007.1|CW228007 104_667_11206124_116_37246_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206124, DNA
sequence
Length = 723
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 358 tgccggactcgctggtgaggcggatggagaaggggcccttga 317
>gb|CW228008.1|CW228008 104_667_11206124_148_37245_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206124, DNA
sequence
Length = 708
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 609 tgccggactcgctggtgaggcggatggagaaggggcccttga 650
>gb|CW333020.1|CW333020 104_830_11481720_148_36038_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481720, DNA
sequence
Length = 671
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 240 tgccggactcgctggtgaggcggatggagaaggggcccttga 281
>gb|CW784462.1|CW784462 SP__Bb0024I23.r SP__Bb Sorghum propinquum genomic clone
SP__Bb0024I23 3', DNA sequence
Length = 607
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 225 tgccggactcgctggtgaggcggatggagaaggggcccttga 184
>gb|CF480054.1|CF480054 POL1_63_A12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_63_A12_A002 5', mRNA sequence
Length = 680
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 650 tgccggactcgctggtgaggcggatggagaaggggcccttga 609
>gb|CF480166.1|CF480166 POL1_64_D03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_D03_A002 3', mRNA sequence
Length = 584
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 330 tgccggactcgctggtgaggcggatggagaaggggcccttga 289
>gb|CF480333.1|CF480333 POL1_65_D03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_D03_A002 3', mRNA sequence
Length = 695
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 453 tgccggactcgctggtgaggcggatggagaaggggcccttga 412
>gb|CF480637.1|CF480637 POL1_67_A06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_A06_A002 3', mRNA sequence
Length = 544
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 271 tgccggactcgctggtgaggcggatggagaaggggcccttga 230
>gb|CF480649.1|CF480649 POL1_67_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_C02_A002 3', mRNA sequence
Length = 580
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 311 tgccggactcgctggtgaggcggatggagaaggggcccttga 270
>gb|CF480745.1|CF480745 POL1_67_D07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_D07_A002 5', mRNA sequence
Length = 663
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 295 tgccggactcgctggtgaggcggatggagaaggggcccttga 336
>gb|CF480969.1|CF480969 POL1_69_E05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_69_E05_A002 3', mRNA sequence
Length = 591
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 311 tgccggactcgctggtgaggcggatggagaaggggcccttga 270
>gb|CF480980.1|CF480980 POL1_69_F07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_69_F07_A002 3', mRNA sequence
Length = 534
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 270 tgccggactcgctggtgaggcggatggagaaggggcccttga 229
>gb|CF481103.1|CF481103 POL1_70_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_B02_A002 3', mRNA sequence
Length = 511
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 268 tgccggactcgctggtgaggcggatggagaaggggcccttga 227
>gb|CF481147.1|CF481147 POL1_70_F07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_F07_A002 3', mRNA sequence
Length = 564
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 268 tgccggactcgctggtgaggcggatggagaaggggcccttga 227
>gb|CF481333.1|CF481333 POL1_71_H03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_H03_A002 3', mRNA sequence
Length = 607
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 255 tgccggactcgctggtgaggcggatggagaaggggcccttga 214
>gb|CF481889.1|CF481889 POL1_75_A04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_75_A04_A002 3', mRNA sequence
Length = 579
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 307 tgccggactcgctggtgaggcggatggagaaggggcccttga 266
>gb|CF482067.1|CF482067 POL1_76_H03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_H03_A002 3', mRNA sequence
Length = 489
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 210 tgccggactcgctggtgaggcggatggagaaggggcccttga 169
>gb|CF482434.1|CF482434 POL1_7_A01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_A01_A002 3', mRNA sequence
Length = 601
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 332 tgccggactcgctggtgaggcggatggagaaggggcccttga 291
>gb|CF482607.1|CF482607 POL1_8_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_B05_A002 3', mRNA sequence
Length = 610
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 307 tgccggactcgctggtgaggcggatggagaaggggcccttga 266
>gb|CF482799.1|CF482799 POL1_9_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_9_F05_A002 3', mRNA sequence
Length = 499
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 210 tgccggactcgctggtgaggcggatggagaaggggcccttga 169
>gb|CF483096.1|CF483096 POL1_11_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_F05_A002 3', mRNA sequence
Length = 626
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 358 tgccggactcgctggtgaggcggatggagaaggggcccttga 317
>gb|CF483137.1|CF483137 POL1_12_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_B09_A002 3', mRNA sequence
Length = 617
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 265 tgccggactcgctggtgaggcggatggagaaggggcccttga 224
>gb|CF483197.1|CF483197 POL1_12_H10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_H10_A002 3', mRNA sequence
Length = 608
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 359 tgccggactcgctggtgaggcggatggagaaggggcccttga 318
>gb|CF483265.1|CF483265 POL1_21_B07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_B07_A002 3', mRNA sequence
Length = 442
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 180 tgccggactcgctggtgaggcggatggagaaggggcccttga 139
>gb|CF483416.1|CF483416 POL1_22_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_22_D07_A002 3', mRNA sequence
Length = 596
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 331 tgccggactcgctggtgaggcggatggagaaggggcccttga 290
>gb|CF483683.1|CF483683 POL1_24_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_24_B02_A002 3', mRNA sequence
Length = 599
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 336 tgccggactcgctggtgaggcggatggagaaggggcccttga 295
>gb|CF483974.1|CF483974 POL1_2_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_2_G02_A002 3', mRNA sequence
Length = 405
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 105 tgccggactcgctggtgaggcggatggagaaggggcccttga 64
>gb|CF483976.1|CF483976 POL1_2_G04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_2_G04_A002 3', mRNA sequence
Length = 572
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 304 tgccggactcgctggtgaggcggatggagaaggggcccttga 263
>gb|CF483980.1|CF483980 POL1_2_G08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_2_G08_A002 3', mRNA sequence
Length = 550
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 303 tgccggactcgctggtgaggcggatggagaaggggcccttga 262
>gb|CF484108.1|CF484108 POL1_3_E05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_E05_A002 3', mRNA sequence
Length = 605
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 338 tgccggactcgctggtgaggcggatggagaaggggcccttga 297
>gb|CF484397.1|CF484397 POL1_25_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_C05_A002 3', mRNA sequence
Length = 558
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 309 tgccggactcgctggtgaggcggatggagaaggggcccttga 268
>gb|CF484704.1|CF484704 POL1_27_A11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_A11_A002 3', mRNA sequence
Length = 733
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 461 tgccggactcgctggtgaggcggatggagaaggggcccttga 420
>gb|CF485051.1|CF485051 POL1_29_D08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_29_D08_A002 3', mRNA sequence
Length = 541
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 269 tgccggactcgctggtgaggcggatggagaaggggcccttga 228
>gb|CF485186.1|CF485186 POL1_30_A03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_A03_A002 3', mRNA sequence
Length = 442
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 177 tgccggactcgctggtgaggcggatggagaaggggcccttga 136
>gb|CF485259.1|CF485259 POL1_30_A04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_A04_A002 5', mRNA sequence
Length = 432
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 294 tgccggactcgctggtgaggcggatggagaaggggcccttga 335
>gb|CF486352.1|CF486352 POL1_37_E10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_37_E10_A002 3', mRNA sequence
Length = 595
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 308 tgccggactcgctggtgaggcggatggagaaggggcccttga 267
>gb|CF486491.1|CF486491 POL1_38_B03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B03_A002 3', mRNA sequence
Length = 572
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 310 tgccggactcgctggtgaggcggatggagaaggggcccttga 269
>gb|CF486514.1|CF486514 POL1_38_D08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D08_A002 3', mRNA sequence
Length = 724
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 460 tgccggactcgctggtgaggcggatggagaaggggcccttga 419
>gb|CF486657.1|CF486657 POL1_39_A11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_39_A11_A002 3', mRNA sequence
Length = 543
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 278 tgccggactcgctggtgaggcggatggagaaggggcccttga 237
>gb|CF486682.1|CF486682 POL1_39_D02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_39_D02_A002 3', mRNA sequence
Length = 568
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 308 tgccggactcgctggtgaggcggatggagaaggggcccttga 267
>gb|CF487484.1|CF487484 POL1_44_C08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_C08_A002 3', mRNA sequence
Length = 584
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 335 tgccggactcgctggtgaggcggatggagaaggggcccttga 294
>gb|CF487538.1|CF487538 POL1_44_H12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_H12_A002 3', mRNA sequence
Length = 611
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 339 tgccggactcgctggtgaggcggatggagaaggggcccttga 298
>gb|CF487622.1|CF487622 POL1_44_H12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_44_H12_A002 5', mRNA sequence
Length = 722
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 690 tgccggactcgctggtgaggcggatggagaaggggcccttga 649
>gb|CF487790.1|CF487790 POL1_46_A03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_A03_A002 3', mRNA sequence
Length = 694
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 429 tgccggactcgctggtgaggcggatggagaaggggcccttga 388
>gb|CF487995.1|CF487995 POL1_47_D10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_D10_A002 3', mRNA sequence
Length = 639
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 344 tgccggactcgctggtgaggcggatggagaaggggcccttga 303
>gb|CF488022.1|CF488022 POL1_47_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_G06_A002 3', mRNA sequence
Length = 639
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 344 tgccggactcgctggtgaggcggatggagaaggggcccttga 303
>gb|CF488299.1|CF488299 POL1_49_A10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_A10_A002 3', mRNA sequence
Length = 606
Score = 58.0 bits (29), Expect = 7e-007
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 333 tgccggactcgctggtgaggcggatagnnnaggggcccttga 374
||||||||||||||||||||||||| | ||||||||||||
Sbjct: 342 tgccggactcgctggtgaggcggatggagaaggggcccttga 301
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,015
Number of Sequences: 832831
Number of extensions: 82015
Number of successful extensions: 24922
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24803
Number of HSP's gapped (non-prelim): 119
length of query: 448
length of database: 491,359,669
effective HSP length: 19
effective length of query: 429
effective length of database: 475,535,880
effective search space: 204004892520
effective search space used: 204004892520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)