BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ4d09.yg.2.1
(542 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkal... 599 e-169
gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassino... 599 e-169
gb|CW215978.1|CW215978 104_648_11194865_148_37114_069 Sorgh... 303 9e-081
gb|CW232234.1|CW232234 104_681_11211552_148_37352_084 Sorgh... 303 9e-081
gb|CW488125.1|CW488125 fsbb001f254f15k0 Sorghum methylation... 303 9e-081
gb|BG052082.1|BG052082 RHIZ2_5_H05.b1_A003 Rhizome2 (RHIZ2)... 270 1e-070
gb|BG103284.1|BG103284 RHIZ2_18_E06.b1_A003 Rhizome2 (RHIZ2... 270 1e-070
gb|CW488124.1|CW488124 fsbb001f254f15f0 Sorghum methylation... 109 3e-022
>gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D06_A002 5', mRNA sequence
Length = 851
Score = 599 bits (302), Expect = e-169
Identities = 365/386 (94%)
Strand = Plus / Plus
Query: 39 catggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttca 98
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 106 catggaacttgccgggacatggaggaaggtgatgccttatatggccatggtctttcttca 165
Query: 99 gttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 158
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gttgggcttcgccgggatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 225
Query: 159 ctatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctccattcgcgct 218
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 226 ctacgtccttgttgtctaccggaacgtagccgcagccattgttatggctccattcgccct 285
Query: 219 atggtttgagaggaaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgc 278
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||
Sbjct: 286 ctggtttgagaggaaaacaaggcctaaactgagcctatcagtgttcatcaagatcctggc 345
Query: 279 tttgggattactcgaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcac 338
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 346 tttgggattactcgagcccgtgctcgaccaaaacttcatctatatgggagtgaatagcac 405
Query: 339 atcagcaagcttctcctctgcgttaaccaacatattgccagctctaacttttgtaaatgc 398
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atcagcaagcttcgcctcggcattaaccaacatattgccagctctaacttttgtaaatgc 465
Query: 399 catcatactcaggatggagaggatag 424
||||||||||||||||||||| ||||
Sbjct: 466 catcatactcaggatggagagaatag 491
>gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_E09_A002 5', mRNA sequence
Length = 610
Score = 599 bits (302), Expect = e-169
Identities = 365/386 (94%)
Strand = Plus / Plus
Query: 39 catggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttca 98
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 103 catggaacttgccgggacatggaggaaggtgatgccttatatggccatggtctttcttca 162
Query: 99 gttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 158
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gttgggcttcgccgggatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 222
Query: 159 ctatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctccattcgcgct 218
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 223 ctacgtccttgttgtctaccggaacgtagccgcagccattgttatggctccattcgccct 282
Query: 219 atggtttgagaggaaaacaaggcctaaaatgagcctaccggtgttcatcaagatccttgc 278
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||
Sbjct: 283 ctggtttgagaggaaaacaaggcctaaactgagcctatcagtgttcatcaagatcctggc 342
Query: 279 tttgggattactcgaacccgtgcttgaccaaaacttcatctacatgggagtgaatagcac 338
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 343 tttgggattactcgagcccgtgctcgaccaaaacttcatctatatgggagtgaatagcac 402
Query: 339 atcagcaagcttctcctctgcgttaaccaacatattgccagctctaacttttgtaaatgc 398
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atcagcaagcttcgcctcggcattaaccaacatattgccagctctaacttttgtaaatgc 462
Query: 399 catcatactcaggatggagaggatag 424
||||||||||||||||||||| ||||
Sbjct: 463 catcatactcaggatggagagaatag 488
>gb|CW215978.1|CW215978 104_648_11194865_148_37114_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194865, DNA
sequence
Length = 680
Score = 303 bits (153), Expect = 9e-081
Identities = 183/193 (94%)
Strand = Plus / Plus
Query: 39 catggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttca 98
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 295 catggaacttgccgggacatggaggaaggtgatgccttatatggccatggtctttcttca 354
Query: 99 gttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 158
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gttgggcttcgccgggatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 414
Query: 159 ctatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctccattcgcgct 218
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 415 ctacgtccttgttgtctaccggaacgtagccgcagccattgttatggctccattcgccct 474
Query: 219 atggtttgagagg 231
||||||||||||
Sbjct: 475 ctggtttgagagg 487
>gb|CW232234.1|CW232234 104_681_11211552_148_37352_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211552, DNA
sequence
Length = 667
Score = 303 bits (153), Expect = 9e-081
Identities = 183/193 (94%)
Strand = Plus / Minus
Query: 39 catggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttca 98
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 501 catggaacttgccgggacatggaggaaggtgatgccttatatggccatggtctttcttca 442
Query: 99 gttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 158
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgggcttcgccgggatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 382
Query: 159 ctatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctccattcgcgct 218
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 381 ctacgtccttgttgtctaccggaacgtagccgcagccattgttatggctccattcgccct 322
Query: 219 atggtttgagagg 231
||||||||||||
Sbjct: 321 ctggtttgagagg 309
>gb|CW488125.1|CW488125 fsbb001f254f15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254f15, DNA
sequence
Length = 629
Score = 303 bits (153), Expect = 9e-081
Identities = 183/193 (94%)
Strand = Plus / Minus
Query: 39 catggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttca 98
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 261 catggaacttgccgggacatggaggaaggtgatgccttatatggccatggtctttcttca 202
Query: 99 gttcggcttcgccggaatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 158
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgggcttcgccgggatgttcctcatctccgtcgcgtccctgcggcagggaatgagcca 142
Query: 159 ctatgtccttgttgtctaccggaacgtagtggcagccattgtcatggctccattcgcgct 218
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct: 141 ctacgtccttgttgtctaccggaacgtagccgcagccattgttatggctccattcgccct 82
Query: 219 atggtttgagagg 231
||||||||||||
Sbjct: 81 ctggtttgagagg 69
>gb|BG052082.1|BG052082 RHIZ2_5_H05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 433
Score = 270 bits (136), Expect = 1e-070
Identities = 175/188 (93%)
Strand = Plus / Plus
Query: 242 ctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactcgaacccgtgc 301
||||| ||||| || | ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 9 ctaaactgagcgtatcagtgttcatcaagatcctggctttgggattactcgagcccgtgc 68
Query: 302 ttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctctgcgt 361
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct: 69 tcgaccaaaacttcatctatatgggagtgaatagcacatcagcaagcttcgcctcggcgt 128
Query: 362 taaccaacatattgccagctctaacttttgtaaatgccatcatactcaggatggagagga 421
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 129 taaccaacatattgccagctctaactttcgtaaatgccatcatactcaggatggagagaa 188
Query: 422 tagtgatt 429
||| ||||
Sbjct: 189 tagagatt 196
>gb|BG103284.1|BG103284 RHIZ2_18_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 500
Score = 270 bits (136), Expect = 1e-070
Identities = 175/188 (93%)
Strand = Plus / Plus
Query: 242 ctaaaatgagcctaccggtgttcatcaagatccttgctttgggattactcgaacccgtgc 301
||||| ||||| || | ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 9 ctaaactgagcgtatcagtgttcatcaagatcctggctttgggattactcgagcccgtgc 68
Query: 302 ttgaccaaaacttcatctacatgggagtgaatagcacatcagcaagcttctcctctgcgt 361
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct: 69 tcgaccaaaacttcatctatatgggagtgaatagcacatcagcaagcttcgcctcggcgt 128
Query: 362 taaccaacatattgccagctctaacttttgtaaatgccatcatactcaggatggagagga 421
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 129 taaccaacatattgccagctctaactttcgtaaatgccatcatactcaggatggagagaa 188
Query: 422 tagtgatt 429
||| ||||
Sbjct: 189 tagagatt 196
>gb|CW488124.1|CW488124 fsbb001f254f15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254f15, DNA
sequence
Length = 650
Score = 109 bits (55), Expect = 3e-022
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 39 catggaacttgccgggacatggaggaaggtgatgccttacatggccatggtgtttcttca 98
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 584 catggaacttgccgggacatggaggaaggtgatgccttatatggccatggtctttcttca 643
Query: 99 gtt 101
|||
Sbjct: 644 gtt 646
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,569
Number of Sequences: 832831
Number of extensions: 128569
Number of successful extensions: 35341
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35329
Number of HSP's gapped (non-prelim): 12
length of query: 542
length of database: 491,359,669
effective HSP length: 19
effective length of query: 523
effective length of database: 475,535,880
effective search space: 248705265240
effective search space used: 248705265240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)