BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW287645.2|AW287645 LG1_244_F09.b1_A002 Light Grown 1 (L... 769 0.0
gb|CD209349.1|CD209349 HS1_42_F06.b1_A012 Heat-shocked seed... 769 0.0
gb|BF655633.1|BF655633 FM1_46_G10.b1_A003 Floral-Induced Me... 737 0.0
gb|BE593370.1|BE593370 WS1_97_A04.b1_A002 Water-stressed 1 ... 646 0.0
gb|BE365619.1|BE365619 PI1_28_D11.g1_A002 Pathogen induced ... 632 e-179
gb|CD205101.1|CD205101 HS1_12_H06.b1_A012 Heat-shocked seed... 632 e-179
gb|AI724572.1|AI724572 RHIZ1_5_E04.y2_A001 Rhizome1 (RHIZ1)... 595 e-168
gb|AW287623.2|AW287623 LG1_244_D09.b1_A002 Light Grown 1 (L... 587 e-165
gb|BG356917.1|BG356917 OV2_11_F03.g1_A002 Ovary 2 (OV2) Sor... 565 e-159
gb|BG049564.1|BG049564 EM1_5_G11.g1_A002 Embryo 1 (EM1) Sor... 494 e-137
gb|BE366889.1|BE366889 PI1_41_B06.g2_A002 Pathogen induced ... 490 e-136
gb|BG050148.1|BG050148 FM1_67_C08.b1_A003 Floral-Induced Me... 476 e-132
gb|BE593060.1|BE593060 WS1_97_A04.g1_A002 Water-stressed 1 ... 369 e-100
gb|CD205197.1|CD205197 HS1_12_H06.g1_A012 Heat-shocked seed... 357 2e-096
gb|CD209718.1|CD209718 HS1_54_G03.b1_A012 Heat-shocked seed... 335 8e-090
gb|CW473842.1|CW473842 fsbb001f229g13k0 Sorghum methylation... 224 2e-056
gb|CW409988.1|CW409988 fsbb001f104i19f0 Sorghum methylation... 192 7e-047
gb|CW439746.1|CW439746 fsbb001f158a16k0 Sorghum methylation... 192 7e-047
gb|CW487145.1|CW487145 fsbb001f252n02f0 Sorghum methylation... 190 3e-046
gb|BZ696164.1|BZ696164 SP__Ba0075C24.r SP__Ba Sorghum propi... 182 7e-044
gb|CW409989.1|CW409989 fsbb001f104i19k0 Sorghum methylation... 182 7e-044
gb|CW790984.1|CW790984 SP__Ba0075C24.r SP__Ba Sorghum propi... 182 7e-044
gb|CW487146.1|CW487146 fsbb001f252n02k0 Sorghum methylation... 168 1e-039
gb|CW203696.1|CW203696 104_631_11186151_148_36907_058 Sorgh... 109 8e-022
gb|BG049886.1|BG049886 FM1_67_C08.g1_A003 Floral-Induced Me... 101 2e-019
gb|CW439745.1|CW439745 fsbb001f158a16f0 Sorghum methylation... 60 7e-007
>gb|AW287645.2|AW287645 LG1_244_F09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 450
Score = 769 bits (388), Expect = 0.0
Identities = 433/448 (96%)
Strand = Plus / Plus
Query: 604 ttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactggtagacaggt 663
||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 1 ttaatcttggcatttatgtggaggatggcaacaaagagttgtctgtactggtagacaggt 60
Query: 664 caattggaggttccagtataaaggatggacaaatagagctaatgctacacaggaggctac 723
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 caattggaggttccagtataaaggatggacaaatagaactaatgctacacaggaggctac 120
Query: 724 tccatgatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgtctcgataagc 783
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccatgatgatgggcgaggcgtcgccgaggcgctaaatgaaacagtctgtctcgataagc 180
Query: 784 aatgtgaaggactcattatacaaggaaaatactatgtcaaaatagacccacaaggagaag 843
||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 181 aatgtgaaggactaattatacaaggaaaatactacgttaaaatagatccacaaggagaag 240
Query: 844 gagctcggtggcgtcggacatttggccaggaaatatactcccctctccttcttgctttca 903
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 241 gagctcggtggcgtcggacatttggccaggaaatatactctcctctcctccttgctttca 300
Query: 904 cagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggatt 963
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 301 cagagcaggatggaggcaactgggcgaattcgcatgttgcaaaattctctgccatggatt 360
Query: 964 caacttacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaagatggaa 1023
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 361 caacttacagcttgcctgataatgttgcaatgcttacccttgaggagcttgaagatggaa 420
Query: 1024 gtgttctccttcggtttgctcatctata 1051
||||||||||||||||||||||||||||
Sbjct: 421 gtgttctccttcggtttgctcatctata 448
>gb|CD209349.1|CD209349 HS1_42_F06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_42_F06_A012 3', mRNA sequence
Length = 701
Score = 769 bits (388), Expect = 0.0
Identities = 484/516 (93%)
Strand = Plus / Plus
Query: 805 aaggaaaatactatgtcaaaatagacccacaaggagaaggagctcggtggcgtcggacat 864
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggaaaatactacgttaaaatagatccacaaggagaaggagctcggtggcgtcggacat 60
Query: 865 ttggccaggaaatatactcccctctccttcttgctttcacagagcaggatggaggcaact 924
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 ttggccaggaaatatactctcctctcctccttgctttcacagagcaggatggaggcaact 120
Query: 925 gggcgaattcacatgttgcaaaattctctgcgatggattcaacttacagcttgcctgata 984
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 121 gggcgaattcgcatgttgcaaaattctctgccatggattcaacttacagcttgcctgaca 180
Query: 985 atgttgcaatgcttacccttcaggagcttgaagatggaagtgttctccttcggtttgctc 1044
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgttgcaatgcttacccttgaggagcttgaagatggaagtgttctccttcggtttgctc 240
Query: 1045 atctatatgaggccggggaggacaaggatctttcgtctttagcgagtatcgacctcaaga 1104
||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 241 atctatacgaggccggggaggacaaggatctttcagctttagcgagtattgacctcaaga 300
Query: 1105 gagtgttcccggagaagaagattggcaaggtcatcgagacaagcttatcggcaaaccaag 1164
|||||||||| || || |||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 301 gagtgttcccagataataagattggcaagatcatcgagacaagcctatcggcaaaccaag 360
Query: 1165 aacgcgcagccatggagaagaagcgtttgaaatggaaggcgcaaggttctgcggcggacg 1224
||||| | ||||||||||||||||| ||||| ||||||| |||||||||||| || ||||
Sbjct: 361 aacgcacggccatggagaagaagcgcttgaagtggaaggtgcaaggttctgctgctgacg 420
Query: 1225 agaaggtggttcggggtggccctgtggatccttcgaagctcgtcgttgagctggggccaa 1284
|||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||
Sbjct: 421 agaaggtggtccggggtggtcctgtggatccttctaagcttgttgttgagctggggccaa 480
Query: 1285 tggagatccgcacattcatcgtcagctttgatcaca 1320
||||||||||||||||||||||||| || |||||||
Sbjct: 481 tggagatccgcacattcatcgtcagtttcgatcaca 516
>gb|BF655633.1|BF655633 FM1_46_G10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 501
Score = 737 bits (372), Expect = 0.0
Identities = 466/496 (93%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 328 ggatgaagtgcaccagcagataaattcatggatttatcagattaccaggcgtttacaagg 387
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 7 ggatgaagtgcaccagcagataaactcatggatatatcagattaccaga-gtttacaagg 65
Query: 388 agaaggactttttggaaactgaatttatagttgggcccataccagtagatgatggaaatg 447
|||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 66 ggaaggactatgtggaaactgaatttatagttgggcctataccagtagatgatggaaatg 125
Query: 448 gaaaagaagtagcaactgaaattgttacaaacatggtgacaaacaaaacattctacactg 507
| |||||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 126 ggaaagaattagcaaccgaaattgttacaaacatggcgacaaacaaaacattttacactg 185
Query: 508 attccagtggacgtgatttcatcaaaaggataagagattatcgatcggagtggaagattg 567
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attccagtggacgcgatttcatcaaaaggataagagattatcgatcggagtggaagattg 245
Query: 568 aagtgcaccagcctattgctggaaactattatcctgttaatcttggcatctatgtggagg 627
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 246 aagtgcaccagcctattgctggaaactattatccagttaatcttggcatttatgtggagg 305
Query: 628 atggcagcaaagagctgtctgtactggtagacaggtcaattggaggttccagtataaagg 687
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 atggcagcaaagagttgtctgtactggtagacaggtcacttggaggttccagtataaagg 365
Query: 688 atggacaaatagagctaatgctacacaggaggctactccatgatgatgggaaaggcgtcg 747
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 366 atggacaaatagaactaatgctacacaggaggctactgcatgatgatgggaaaggcgttg 425
Query: 748 ccgaggcgctaaatgaaacagtctgtctcgataagcaatgtgaaggactcattatacaag 807
|| |||| ||||||||||||| |||||||||||||||||||||||||| | |||| |||
Sbjct: 426 cccaggctttaaatgaaacagtttgtctcgataagcaatgtgaaggactaactatagaag 485
Query: 808 gaaaatactatgtcaa 823
|||| |||||| ||||
Sbjct: 486 gaaagtactatatcaa 501
>gb|BE593370.1|BE593370 WS1_97_A04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 402
Score = 646 bits (326), Expect = 0.0
Identities = 371/386 (96%)
Strand = Plus / Plus
Query: 729 gatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgtctcgataagcaatgt 788
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gatgatgggcgaggcgtcgccgaggcgctaaatgaaacagtctgtctcgataagcaatgt 67
Query: 789 gaaggactcattatacaaggaaaatactatgtcaaaatagacccacaaggagaaggagct 848
|||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 68 gaaggactaattatacaaggaaaatactacgttaaaatagatccacaaggagaaggagct 127
Query: 849 cggtggcgtcggacatttggccaggaaatatactcccctctccttcttgctttcacagag 908
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 128 cggtggcgtcggacatttggccaggaaatatactctcctctcctccttgctttcacagag 187
Query: 909 caggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggattcaact 968
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 188 caggatggaggcaactgggcgaattcgcatgttgcaaaattctctgccatggattcaact 247
Query: 969 tacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaagatggaagtgtt 1028
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 tacagcttgcctgataatgttgcaatgcttacccttgaggagcttgaagatggaagtgtt 307
Query: 1029 ctccttcggtttgctcatctatatgaggccggggaggacaaggatctttcgtctttagcg 1088
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 308 ctccttcggtttgctcatctatacgaggccggggaggacaaggatctttcagctttagcg 367
Query: 1089 agtatcgacctcaagagagtgttccc 1114
||||| ||||||||||||||||||||
Sbjct: 368 agtattgacctcaagagagtgttccc 393
>gb|BE365619.1|BE365619 PI1_28_D11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 611
Score = 632 bits (319), Expect = e-179
Identities = 397/423 (93%)
Strand = Plus / Plus
Query: 898 ctttcacagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctctgcga 957
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1 ctttcacagagcaggatggaggcaactgggcgaattcgcatgttgcaaaattctctgcca 60
Query: 958 tggattcaacttacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaag 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 tggattcaacttacagcttgcctgataatgttgcaatgcttacccttgaggagcttgaag 120
Query: 1018 atggaagtgttctccttcggtttgctcatctatatgaggccggggaggacaaggatcttt 1077
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 atggaagtgttctccttcggtttgctcatctatacgaggccggggaggacaaggatcttt 180
Query: 1078 cgtctttagcgagtatcgacctcaagagagtgttcccggagaagaagattggcaaggtca 1137
| ||||||||||||| |||||||||||||||||||| || || |||||||||||| |||
Sbjct: 181 cagctttagcgagtattgacctcaagagagtgttcccagataataagattggcaagatca 240
Query: 1138 tcgagacaagcttatcggcaaaccaagaacgcgcagccatggagaagaagcgtttgaaat 1197
||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |
Sbjct: 241 tcgagacaagcctatcggcaaaccaagaacgcacggccatggagaagaagcgcttgaagt 300
Query: 1198 ggaaggcgcaaggttctgcggcggacgagaaggtggttcggggtggccctgtggatcctt 1257
|||||| |||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct: 301 ggaaggtgcaaggttctgctgctgacgagaaggtggtccggggtggtcctgtggatcctt 360
Query: 1258 cgaagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctttgatc 1317
| ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 361 ctaagcttgttgttgagctggggccaatggagatccgcacattcatcgtcagtttcgatc 420
Query: 1318 aca 1320
|||
Sbjct: 421 aca 423
>gb|CD205101.1|CD205101 HS1_12_H06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_12_H06_A012 3', mRNA sequence
Length = 607
Score = 632 bits (319), Expect = e-179
Identities = 397/423 (93%)
Strand = Plus / Plus
Query: 898 ctttcacagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctctgcga 957
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1 ctttcacagagcaggatggaggcaactgggcgaattcgcatgttgcaaaattctctgcca 60
Query: 958 tggattcaacttacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaag 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 tggattcaacttacagcttgcctgataatgttgcaatgcttacccttgaggagcttgaag 120
Query: 1018 atggaagtgttctccttcggtttgctcatctatatgaggccggggaggacaaggatcttt 1077
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 atggaagtgttctccttcggtttgctcatctatacgaggccggggaggacaaggatcttt 180
Query: 1078 cgtctttagcgagtatcgacctcaagagagtgttcccggagaagaagattggcaaggtca 1137
| ||||||||||||| |||||||||||||||||||| || || |||||||||||| |||
Sbjct: 181 cagctttagcgagtattgacctcaagagagtgttcccagataataagattggcaagatca 240
Query: 1138 tcgagacaagcttatcggcaaaccaagaacgcgcagccatggagaagaagcgtttgaaat 1197
||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |
Sbjct: 241 tcgagacaagcctatcggcaaaccaagaacgcacggccatggagaagaagcgcttgaagt 300
Query: 1198 ggaaggcgcaaggttctgcggcggacgagaaggtggttcggggtggccctgtggatcctt 1257
|||||| |||||||||||| || |||||||||||||| |||||||| |||||||||||||
Sbjct: 301 ggaaggtgcaaggttctgctgctgacgagaaggtggtccggggtggtcctgtggatcctt 360
Query: 1258 cgaagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctttgatc 1317
| ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 361 ctaagcttgttgttgagctggggccaatggagatccgcacattcatcgtcagtttcgatc 420
Query: 1318 aca 1320
|||
Sbjct: 421 aca 423
>gb|AI724572.1|AI724572 RHIZ1_5_E04.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 542
Score = 595 bits (300), Expect = e-168
Identities = 401/434 (92%), Gaps = 3/434 (0%)
Strand = Plus / Plus
Query: 923 ctgggcgaattcacatgttgcaaaattctctgcgatggattcaacttacagcttgcctga 982
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4 ctgggcgaattcgcatgttgcaaaattctctgccatggattcaacttacagcttgcctga 63
Query: 983 taatgttgcaatgcttacccttcaggagcttgaagatggaagtgttctccttcggtttgc 1042
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 64 taatgttgcaatgcttacccttcaggagctcgaagatggaagtgttctccttcggtttgc 123
Query: 1043 tcatctatatgaggccggggaggacaaggatctttcgtctttagcgagtatcgacctcaa 1102
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 124 tcatctatacgaggccggggaggacaaggatctttcagctttagcgagtatcgacctcaa 183
Query: 1103 gagagtgttcccggagaagaagattggcaaggtcatcgagacaagcttatcggcaaacca 1162
|||||||||||| || ||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 184 gagagtgttcccagataagaagattggcaagatcatcgagacaagcctatcggcgaacca 243
Query: 1163 agaacgcgcagccatggagaagaagcgtttgaaatggaaggcgcaaggttctgcggcgga 1222
||||||| | ||||||||||||||||| ||||||||||||| |||||||||||| || ||
Sbjct: 244 agaacgcacggccatggagaagaagcgcttgaaatggaaggtgcaaggttctgctgctga 303
Query: 1223 cgagaaggtggttcggggtggccctgtggatccttcgaagctcgtcgttgagctggggcc 1282
|||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 304 tgagagcgtggtccggggtggtcctgtggatccttccaagcttgttgttgagctggggcc 363
Query: 1283 aatggagatccgcacattcatcgtcagctttgatc---acatcagtgacaagcaacagct 1339
||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||
Sbjct: 364 catggagatccgcacattcatcgtcagcttcgatcacaacattagtgacaagcaactgct 423
Query: 1340 ctaatcgtctccga 1353
|| |||||||||||
Sbjct: 424 ctgatcgtctccga 437
>gb|AW287623.2|AW287623 LG1_244_D09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 348
Score = 587 bits (296), Expect = e-165
Identities = 335/348 (96%)
Strand = Plus / Plus
Query: 604 ttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactggtagacaggt 663
||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 1 ttaatcttggcatttatgtggaggatggcaacaaagagttgtctgtactggtagacaggt 60
Query: 664 caattggaggttccagtataaaggatggacaaatagagctaatgctacacaggaggctac 723
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 caattggaggttccagtataaaggatggacaaatagaactaatgctacacaggaggctac 120
Query: 724 tccatgatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgtctcgataagc 783
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccatgatgatgggcgaggcgtcgccgaggcgctaaatgaaacagtctgtctcgataagc 180
Query: 784 aatgtgaaggactcattatacaaggaaaatactatgtcaaaatagacccacaaggagaag 843
||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||
Sbjct: 181 aatgtgaaggactaattatacaaggaaaatactacgttaaaatagatccacaaggagaag 240
Query: 844 gagctcggtggcgtcggacatttggccaggaaatatactcccctctccttcttgctttca 903
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 241 gagctcggtggcgtcggacatttggccaggaaatatactctcctctcctccttgctttca 300
Query: 904 cagagcaggatggaggcaactgggcgaattcacatgttgcaaaattct 951
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 cagagcaggatggaggcaactgggcgaattcgcatgttgcaaaattct 348
>gb|BG356917.1|BG356917 OV2_11_F03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 549
Score = 565 bits (285), Expect = e-159
Identities = 360/385 (93%)
Strand = Plus / Plus
Query: 936 catgttgcaaaattctctgcgatggattcaacttacagcttgcctgataatgttgcaatg 995
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4 catgttgcaaaattctctgccatggattcaacttacagcttgcctgataatgttgcaatg 63
Query: 996 cttacccttcaggagcttgaagatggaagtgttctccttcggtttgctcatctatatgag 1055
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 64 cttacccttgaggagcttgaagatggaagtgttctccttcggtttgctcatctatacgag 123
Query: 1056 gccggggaggacaaggatctttcgtctttagcgagtatcgacctcaagagagtgttcccg 1115
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 124 gccggggaggacaaggatctttcagctttagcgagtattgacctcaagagagtgttccca 183
Query: 1116 gagaagaagattggcaaggtcatcgagacaagcttatcggcaaaccaagaacgcgcagcc 1175
|| || |||||||||||| |||||||||||||| |||||||||||||||||||| | |||
Sbjct: 184 gataataagattggcaagatcatcgagacaagcctatcggcaaaccaagaacgcacggcc 243
Query: 1176 atggagaagaagcgtttgaaatggaaggcgcaaggttctgcggcggacgagaaggtggtt 1235
|||||||||||||| ||||| ||||||| |||||||||||| || ||||||||||||||
Sbjct: 244 atggagaagaagcgcttgaagtggaaggtgcaaggttctgctgctgacgagaaggtggtc 303
Query: 1236 cggggtggccctgtggatccttcgaagctcgtcgttgagctggggccaatggagatccgc 1295
|||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 304 cggggtggtcctgtggatccttctaagcttgttgttgagctggggccaatggagatccgc 363
Query: 1296 acattcatcgtcagctttgatcaca 1320
|||||||||||||| || |||||||
Sbjct: 364 acattcatcgtcagtttcgatcaca 388
>gb|BG049564.1|BG049564 EM1_5_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 534
Score = 494 bits (249), Expect = e-137
Identities = 321/345 (93%)
Strand = Plus / Plus
Query: 976 tgcctgataatgttgcaatgcttacccttcaggagcttgaagatggaagtgttctccttc 1035
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tgcctgataatgttgcaatgcttacccttgaggagcttgaagatggaagtgttctccttc 60
Query: 1036 ggtttgctcatctatatgaggccggggaggacaaggatctttcgtctttagcgagtatcg 1095
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 61 ggtttgctcatctatacgaggccggggaggacaaggatctttcagctttagcgagtattg 120
Query: 1096 acctcaagagagtgttcccggagaagaagattggcaaggtcatcgagacaagcttatcgg 1155
||||||||||||||||||| || || |||||||||||| |||||||||||||| ||||||
Sbjct: 121 acctcaagagagtgttcccagataataagattggcaagatcatcgagacaagcctatcgg 180
Query: 1156 caaaccaagaacgcgcagccatggagaagaagcgtttgaaatggaaggcgcaaggttctg 1215
|||||||||||||| | ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct: 181 caaaccaagaacgcacggccatggagaagaagcgcttgaagtggaaggtgcaaggttctg 240
Query: 1216 cggcggacgagaaggtggttcggggtggccctgtggatccttcgaagctcgtcgttgagc 1275
| || |||||||||||||| |||||||| |||||||||||||| ||||| || |||||||
Sbjct: 241 ctgctgacgagaaggtggtccggggtggtcctgtggatccttctaagcttgttgttgagc 300
Query: 1276 tggggccaatggagatccgcacattcatcgtcagctttgatcaca 1320
|||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 301 tggggccaatggagatccgcacattcatcgtcagtttcgatcaca 345
>gb|BE366889.1|BE366889 PI1_41_B06.g2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 315
Score = 490 bits (247), Expect = e-136
Identities = 298/315 (94%)
Strand = Plus / Plus
Query: 898 ctttcacagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctctgcga 957
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1 ctttcacagagcaggatggaggcaactgggcgaattcgcatgttgcaaaattctctgcca 60
Query: 958 tggattcaacttacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaag 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 tggattcaacttacagcttgcctgataatgttgcaatgcttacccttgaggagcttgaag 120
Query: 1018 atggaagtgttctccttcggtttgctcatctatatgaggccggggaggacaaggatcttt 1077
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 atggaagtgttctccttcggtttgctcatctatacgaggccggggaggacaaggatcttt 180
Query: 1078 cgtctttagcgagtatcgacctcaagagagtgttcccggagaagaagattggcaaggtca 1137
| ||||||||||||| |||||||||||||||||||| || || |||||||||||| |||
Sbjct: 181 cagctttagcgagtattgacctcaagagagtgttcccagataataagattggcaagatca 240
Query: 1138 tcgagacaagcttatcggcaaaccaagaacgcgcagccatggagaagaagcgtttgaaat 1197
||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||| |
Sbjct: 241 tcgagacaagcctatcggcaaaccaagaacgcacggccatggagaagaagcgcttgaagt 300
Query: 1198 ggaaggcgcaaggtt 1212
|||||| ||||||||
Sbjct: 301 ggaaggtgcaaggtt 315
>gb|BG050148.1|BG050148 FM1_67_C08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 447
Score = 476 bits (240), Expect = e-132
Identities = 292/308 (94%), Gaps = 1/308 (0%)
Strand = Plus / Plus
Query: 294 aggtttctctcacagttctgcgtgggcccatattggatgaagtgcaccagcagataaatt 353
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 137 aggttcctctcacggttctgcgtgggcccatattggatgaagtgcaccagcagataaact 196
Query: 354 catggatttatcagattaccaggcgtttacaaggagaaggactttttggaaactgaattt 413
||||||| |||||||||||||| |||||||||| |||||||| | ||||||||||||||
Sbjct: 197 catggatatatcagattaccaga-gtttacaaggggaaggactatgtggaaactgaattt 255
Query: 414 atagttgggcccataccagtagatgatggaaatggaaaagaagtagcaactgaaattgtt 473
||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 256 atagttgggcctataccagtagatgatggaaatgggaaagaattagcaaccgaaattgtt 315
Query: 474 acaaacatggtgacaaacaaaacattctacactgattccagtggacgtgatttcatcaaa 533
|||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 316 acaaacatggcgacaaacaaaacattttacactgattccagtggacgcgatttcatcaaa 375
Query: 534 aggataagagattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aggataagagattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaac 435
Query: 594 tattatcc 601
||||||||
Sbjct: 436 tattatcc 443
>gb|BE593060.1|BE593060 WS1_97_A04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 438
Score = 369 bits (186), Expect = e-100
Identities = 255/278 (91%)
Strand = Plus / Plus
Query: 1043 tcatctatatgaggccggggaggacaaggatctttcgtctttagcgagtatcgacctcaa 1102
||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 2 tcatctatacgaggccggggaggacaaggatctttcagctttagcgagtattgacctcaa 61
Query: 1103 gagagtgttcccggagaagaagattggcaaggtcatcgagacaagcttatcggcaaacca 1162
|||||||||||| || || |||||||||||| |||||||||||||| |||||||||||||
Sbjct: 62 gagagtgttcccagataataagattggcaagatcatcgagacaagcctatcggcaaacca 121
Query: 1163 agaacgcgcagccatggagaagaagcgtttgaaatggaaggcgcaaggttctgcggcgga 1222
||||||| | ||||||||||||||||| ||||| ||||||| |||||||||||| || ||
Sbjct: 122 agaacgcacggccatggagaagaagcgcttgaagtggaaggtgcaaggttctgctgctga 181
Query: 1223 cgagaaggtggttcggggtggccctgtggatccttcgaagctcgtcgttgagctggggcc 1282
|||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 182 cgagaaggtggtccggggtggtcctgtggatccttctaagcttgttgttgagctggggcc 241
Query: 1283 aatggagatccgcacattcatcgtcagctttgatcaca 1320
||||||||||||||||||||||||||| || |||||||
Sbjct: 242 aatggagatccgcacattcatcgtcagtttcgatcaca 279
>gb|CD205197.1|CD205197 HS1_12_H06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_12_H06_A012 5', mRNA sequence
Length = 710
Score = 357 bits (180), Expect = 2e-096
Identities = 225/240 (93%)
Strand = Plus / Plus
Query: 64 tcaaggaagtgaaagtagtaatctacaagttggtcaaggcaacttgaaacttcaatataa 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 471 tcaaggaagtgaaagtagtaatctacaagttggtcaagggaacttgaaacttcaatataa 530
Query: 124 tgaagctggaaaattatccctgtactccgatagtaagactatggttcaagcaaactttga 183
|| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 531 tgcagctggaacattatccctgtactccgatagtaagactcaggttcaagcaaattttga 590
Query: 184 gcagaaatacaagtattatattggacaggatggaaatggaagtgatcctcaggcttctgg 243
|||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||||||
Sbjct: 591 gcagaaatacaagtattacattggacaggatggaaatgcaactgatcctcacgcttctgg 650
Query: 244 agcatacatattccgccctaatggcacagttccaatcagtactgatgggcaggtttctct 303
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct: 651 agcatacatattccgccctaatggcacagttccaatcaagactgatgatcaggttcctct 710
>gb|CD209718.1|CD209718 HS1_54_G03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_54_G03_A012 3', mRNA sequence
Length = 429
Score = 335 bits (169), Expect = 8e-090
Identities = 238/261 (91%)
Strand = Plus / Plus
Query: 1060 gggaggacaaggatctttcgtctttagcgagtatcgacctcaagagagtgttcccggaga 1119
||||||||||||||||||| ||||||||||||| | |||||||||||||||||| || |
Sbjct: 1 gggaggacaaggatctttcagctttagcgagtattgccctcaagagagtgttcccagata 60
Query: 1120 agaagattggcaaggtcatcgagacaagcttatcggcaaaccaagaacgcgcagccatgg 1179
| |||||||||||| |||||||||||||| |||||||||||||||||||| | |||||||
Sbjct: 61 ataagattggcaagatcatcgagacaagcctatcggcaaaccaagaacgcacggccatgg 120
Query: 1180 agaagaagcgtttgaaatggaaggcgcaaggttctgcggcggacgagaaggtggttcggg 1239
|||||||||| ||||| ||||||| |||||||||||| || |||||||||||||| ||||
Sbjct: 121 agaagaagcgcttgaagtggaaggtgcaaggttctgctgctgacgagaaggtggtccggg 180
Query: 1240 gtggccctgtggatccttcgaagctcgtcgttgagctggggccaatggagatccgcacat 1299
|||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct: 181 gtggtcctgtggatccttctaagcttgttgttgagctggggccaatggagatccgcacat 240
Query: 1300 tcatcgtcagctttgatcaca 1320
|||||||||| || |||||||
Sbjct: 241 tcatcgtcagtttcgatcaca 261
>gb|CW473842.1|CW473842 fsbb001f229g13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229g13, DNA
sequence
Length = 666
Score = 224 bits (113), Expect = 2e-056
Identities = 131/137 (95%)
Strand = Plus / Minus
Query: 27 cagcacatatttcttcgaagtccactcagtactcacctcaaggaagtgaaagtagtaatc 86
|||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 cagcacatatgtcttcaaagtccagtcagtactcacctcaaggaagtgaaagtagtaatc 350
Query: 87 tacaagttggtcaaggcaacttgaaacttcaatataatgaagctggaaaattatccctgt 146
|||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 349 tacaagttggtcaagggaacttgaaacttcaatataatgcagctggaacattatccctgt 290
Query: 147 actccgatagtaagact 163
|||||||||||||||||
Sbjct: 289 actccgatagtaagact 273
Score = 87.7 bits (44), Expect = 3e-015
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 166 ggttcaagcaaactttgagcagaaatacaagtattatattggacaggatgga 217
|||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 52 ggttcaagcaaattttgagcagaaatacaagtattacattggacaggatgga 1
>gb|CW409988.1|CW409988 fsbb001f104i19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104i19, DNA
sequence
Length = 607
Score = 192 bits (97), Expect = 7e-047
Identities = 109/113 (96%)
Strand = Plus / Plus
Query: 604 ttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactggtagacaggt 663
||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 48 ttaatcttggcatttatgtggaggatggcaacaaagagttgtctgtactggtagacaggt 107
Query: 664 caattggaggttccagtataaaggatggacaaatagagctaatgctacacagg 716
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 108 caattggaggttccagtataaaggatggacaaatagaactaatgctacacagg 160
Score = 149 bits (75), Expect = 9e-034
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 714 aggaggctactccatgatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgt 773
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 aggaggctactccatgatgatgggcgaggcgtcgccgaggcgctaaatgaaacagtctgt 307
Query: 774 ctcgataagcaatgtgaaggact 796
|||||||||||||||||||||||
Sbjct: 308 ctcgataagcaatgtgaaggact 330
>gb|CW439746.1|CW439746 fsbb001f158a16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158a16, DNA
sequence
Length = 619
Score = 192 bits (97), Expect = 7e-047
Identities = 109/113 (96%)
Strand = Plus / Minus
Query: 604 ttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactggtagacaggt 663
||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 541 ttaatcttggcatttatgtggaggatggcaacaaagagttgtctgtactggtagacaggt 482
Query: 664 caattggaggttccagtataaaggatggacaaatagagctaatgctacacagg 716
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 481 caattggaggttccagtataaaggatggacaaatagaactaatgctacacagg 429
Score = 149 bits (75), Expect = 9e-034
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 714 aggaggctactccatgatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgt 773
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 341 aggaggctactccatgatgatgggcgaggcgtcgccgaggcgctaaatgaaacagtctgt 282
Query: 774 ctcgataagcaatgtgaaggact 796
|||||||||||||||||||||||
Sbjct: 281 ctcgataagcaatgtgaaggact 259
>gb|CW487145.1|CW487145 fsbb001f252n02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252n02, DNA
sequence
Length = 677
Score = 190 bits (96), Expect = 3e-046
Identities = 114/120 (95%)
Strand = Plus / Plus
Query: 417 gttgggcccataccagtagatgatggaaatggaaaagaagtagcaactgaaattgttaca 476
||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 331 gttggacctataccagtagatgatggaaatgggaaagaattagcaactgaaattgttaca 390
Query: 477 aacatggtgacaaacaaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 391 aacatggcgacaaacaaaacattttacactgattccagtggacgtgatttcatcaaaagg 450
Score = 60.0 bits (30), Expect = 7e-007
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 365 cagattaccaggcgtttacaaggagaaggactttttggaaactgaatttatagt 418
||||||||||| |||||||||| |||||||| | |||||||||||||||||||
Sbjct: 113 cagattaccaga-gtttacaaggggaaggactatgtggaaactgaatttatagt 165
>gb|BZ696164.1|BZ696164 SP__Ba0075C24.r SP__Ba Sorghum propinquum genomic clone SP__Ba0075C24
3', DNA sequence
Length = 1119
Score = 182 bits (92), Expect = 7e-044
Identities = 98/100 (98%)
Strand = Plus / Minus
Query: 909 caggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggattcaact 968
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 727 caggatggaggcaactgggcgaattcgcatgttgcaaaattctctgccatggattcaact 668
Query: 969 tacagcttgcctgataatgttgcaatgcttacccttcagg 1008
||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tacagcttgcctgataatgttgcaatgcttacccttcagg 628
Score = 137 bits (69), Expect = 4e-030
Identities = 105/116 (90%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 1054 aggccggggaggacaaggatctttcgtctttagcgagtatcgacctcaagagagtgttcc 1113
||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||
Sbjct: 205 aggccggggaggacaaggatctttcagctttagcgagtatcg--ctaaggagagtgttcc 148
Query: 1114 cggagaagaagattggcaaggtcatcgagacaagcttatcggcaaaccaagaacgc 1169
| || ||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct: 147 cagataagaagattggcaagatcatcgagacaagcctatcggcgaaccaagaacgc 92
Score = 95.6 bits (48), Expect = 1e-017
Identities = 51/52 (98%)
Strand = Plus / Minus
Query: 1005 caggagcttgaagatggaagtgttctccttcggtttgctcatctatatgagg 1056
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 346 caggagcttgaagatggaagtgttctccttcggtttgctcatctatacgagg 295
Score = 65.9 bits (33), Expect = 1e-008
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 848 tcggtggcgtcggacatttggccaggaaatatactcccctctccttcttgctttcacaga 907
|||||||| ||||||||||| | |||||||||| |||||||||||| || ||||| ||||
Sbjct: 929 tcggtggcttcggacatttgtc-aggaaatatattcccctctccttttttctttcccaga 871
Query: 908 gcagg 912
|||||
Sbjct: 870 gcagg 866
>gb|CW409989.1|CW409989 fsbb001f104i19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104i19, DNA
sequence
Length = 778
Score = 182 bits (92), Expect = 7e-044
Identities = 107/112 (95%)
Strand = Plus / Minus
Query: 801 atacaaggaaaatactatgtcaaaatagacccacaaggagaaggagctcggtggcgtcgg 860
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 atacaaggaaaatactacgttaaaatagatccacaaggagaaggagctcggtggcgtcgg 441
Query: 861 acatttggccaggaaatatactcccctctccttcttgctttcacagagcagg 912
||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 440 acatttggccaggaaatatactctcctctcctccttgctttcacagagcagg 389
Score = 174 bits (88), Expect = 2e-041
Identities = 94/96 (97%)
Strand = Plus / Minus
Query: 909 caggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggattcaact 968
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 311 caggatggaggcaactgggcgaattcgcatgttgcaaaattctctgccatggattcaact 252
Query: 969 tacagcttgcctgataatgttgcaatgcttaccctt 1004
||||||||||||||||||||||||||||||||||||
Sbjct: 251 tacagcttgcctgataatgttgcaatgcttaccctt 216
>gb|CW790984.1|CW790984 SP__Ba0075C24.r SP__Ba Sorghum propinquum genomic clone SP__Ba0075C24
3', DNA sequence
Length = 775
Score = 182 bits (92), Expect = 7e-044
Identities = 98/100 (98%)
Strand = Plus / Minus
Query: 909 caggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggattcaact 968
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 685 caggatggaggcaactgggcgaattcgcatgttgcaaaattctctgccatggattcaact 626
Query: 969 tacagcttgcctgataatgttgcaatgcttacccttcagg 1008
||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacagcttgcctgataatgttgcaatgcttacccttcagg 586
Score = 163 bits (82), Expect = 6e-038
Identities = 143/162 (88%), Gaps = 1/162 (0%)
Strand = Plus / Minus
Query: 1054 aggccggggaggacaaggatctttcgtctttagcgagtatcgacctcaagagagtgttcc 1113
||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||
Sbjct: 163 aggccggggaggacaaggatctttcagctttagcgagtatcgtcttcagaagagtgttcc 104
Query: 1114 cggagaagaagattggcaaggtcatcgagacaagcttatcggcaaaccaagaacgcgcag 1173
| || ||||||||||||||| |||||||||||||| ||||||| |||||||||||| | |
Sbjct: 103 cagataagaagattggcaagatcatcgagacaagcctatcggcgaaccaagaacgctctg 44
Query: 1174 ccatggaga-agaagcgtttgaaatggaaggcgcaaggttct 1214
|| ||||| |||||| ||||||||||||| ||||||||||
Sbjct: 43 tcacggagagggaagcgcttgaaatggaaggtgcaaggttct 2
Score = 95.6 bits (48), Expect = 1e-017
Identities = 51/52 (98%)
Strand = Plus / Minus
Query: 1005 caggagcttgaagatggaagtgttctccttcggtttgctcatctatatgagg 1056
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 304 caggagcttgaagatggaagtgttctccttcggtttgctcatctatacgagg 253
>gb|CW487146.1|CW487146 fsbb001f252n02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252n02, DNA
sequence
Length = 762
Score = 168 bits (85), Expect = 1e-039
Identities = 94/97 (96%)
Strand = Plus / Minus
Query: 604 ttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactggtagacaggt 663
||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 99 ttaatcttggcatttatgtggaggatggcaacaaagagttgtctgtactggtagacaggt 40
Query: 664 caattggaggttccagtataaaggatggacaaataga 700
|||||||||||||||||||||||||||||||||||||
Sbjct: 39 caattggaggttccagtataaaggatggacaaataga 3
Score = 137 bits (69), Expect = 4e-030
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 536 gataagagattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaacta 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gataagagattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaacta 540
Query: 596 ttatcctgt 604
|||||||||
Sbjct: 539 ttatcctgt 531
>gb|CW203696.1|CW203696 104_631_11186151_148_36907_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186151, DNA
sequence
Length = 656
Score = 109 bits (55), Expect = 8e-022
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 166 ggttcaagcaaactttgagcagaaatacaagtattatattggacaggatggaaatggaag 225
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 229 ggttcaagcaaattttgagcagaaatacaagtattacattggacaggatggaaatgcaac 288
Query: 226 tgatcctcagg 236
|||||||||||
Sbjct: 289 tgatcctcagg 299
Score = 107 bits (54), Expect = 3e-021
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 294 aggtttctctcacagttctgcgtgggcccatattggatgaagtgcaccagcagataaatt 353
||||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 547 aggttcctcttacggttctgcgtgggcccatagtggatgaagtgcaccagcagataaatt 606
Query: 354 catggatttatcag 367
||||||| ||||||
Sbjct: 607 catggatatatcag 620
Score = 97.6 bits (49), Expect = 3e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 234 aggcttctggagcatacatattccgccctaatggcacagttccaatcagtactgatg 290
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 375 aggcttctggagcatacatattccgccctaatggcacagttccaatcaagactgatg 431
>gb|BG049886.1|BG049886 FM1_67_C08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 471
Score = 101 bits (51), Expect = 2e-019
Identities = 86/97 (88%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 1260 aagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctttgatc-- 1317
||||| || |||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct: 5 aagcttgttgttgagctggggcccatggagatccgcacattcgtcgtcagcttcgatcac 64
Query: 1318 -acatcagtgacaagcaacagctctaatcgtctccga 1353
|||| ||||||||||||| ||||| |||||||||||
Sbjct: 65 aacattagtgacaagcaactgctctgatcgtctccga 101
>gb|CW439745.1|CW439745 fsbb001f158a16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f158a16, DNA
sequence
Length = 427
Score = 60.0 bits (30), Expect = 7e-007
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 365 cagattaccaggcgtttacaaggagaaggactttttggaaactgaatttatagt 418
||||||||||| |||||||||| |||||||| | |||||||||||||||||||
Sbjct: 302 cagattaccaga-gtttacaaggggaaggactatgtggaaactgaatttatagt 354
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 462,076
Number of Sequences: 832831
Number of extensions: 462076
Number of successful extensions: 127396
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127319
Number of HSP's gapped (non-prelim): 66
length of query: 1626
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1606
effective length of database: 474,703,049
effective search space: 762373096694
effective search space used: 762373096694
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)