BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAZ2b01.yg.2.1
         (541 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE919101.1|BE919101  FM1_3_B06.b1_A003 Floral-Induced Mer...   276   2e-072
gb|BZ693233.1|BZ693233  SP__Ba0031M04.f SP__Ba Sorghum propi...    40   0.20 
gb|BZ695838.1|BZ695838  SP__Ba0069J15.r SP__Ba Sorghum propi...    40   0.20 
gb|CL172807.1|CL172807  104_375_10890425_116_31797_329 Sorgh...    40   0.20 
gb|CW787182.1|CW787182  SP__Ba0031M04.f SP__Ba Sorghum propi...    40   0.20 
gb|CW790488.1|CW790488  SP__Ba0069J15.r SP__Ba Sorghum propi...    40   0.20 

>gb|BE919101.1|BE919101 FM1_3_B06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 521

 Score =  276 bits (139), Expect = 2e-072
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                       
Query: 261 ggtcatgtatttgtgcgggtctgtttggctgataactcaaatatggaagccggtcaggtc 320
           |||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||
Sbjct: 4   ggtcatgtatttgtgcgggtctgtttggctgagaactcaaatatggaagctaatcaggtc 63

                                                                       
Query: 321 ctaaatggagccatgaatgggaaagatggtagagttgattcaacaactaatggtgccttc 380
           ||| ||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct: 64  ctacatggaaccatgaatgggaaagatggtaaagttgagtcaacaactaatggcgccttc 123

                                                                       
Query: 381 aatactctgagtgggtttgaagcagcannnngacgaaatagttggcaatattttnngatg 440
           |||||| |||||||||||||||| |||    |||| ||||||||||||||||||  | ||
Sbjct: 124 aatactttgagtgggtttgaagcggcagacagacggaatagttggcaatattttaagctg 183

                                                
Query: 441 ctcctctctgataaggagtcccttttggatgatcttg 477
           ||||||||| |||||||||| ||||||||||||||||
Sbjct: 184 ctcctctctaataaggagtcacttttggatgatcttg 220



>gb|BZ693233.1|BZ693233 SP__Ba0031M04.f SP__Ba Sorghum propinquum genomic clone
           SP__Ba0031M04 5', DNA sequence
          Length = 502

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 cagtatttgtatgtgacaat 173
           ||||||||||||||||||||
Sbjct: 128 cagtatttgtatgtgacaat 109



>gb|BZ695838.1|BZ695838 SP__Ba0069J15.r SP__Ba Sorghum propinquum genomic clone
           SP__Ba0069J15 3', DNA sequence
          Length = 936

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 cagtatttgtatgtgacaat 173
           ||||||||||||||||||||
Sbjct: 142 cagtatttgtatgtgacaat 123



>gb|CL172807.1|CL172807 104_375_10890425_116_31797_329 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10890425, DNA
           sequence
          Length = 206

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 114 ttattttcttcaaagtcacgggagaagtgcattgag 149
           |||||||||||||||||| | |||||| | ||||||
Sbjct: 69  ttattttcttcaaagtcaagagagaagggaattgag 34



>gb|CW787182.1|CW787182 SP__Ba0031M04.f SP__Ba Sorghum propinquum genomic clone
           SP__Ba0031M04 5', DNA sequence
          Length = 845

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 cagtatttgtatgtgacaat 173
           ||||||||||||||||||||
Sbjct: 137 cagtatttgtatgtgacaat 118



>gb|CW790488.1|CW790488 SP__Ba0069J15.r SP__Ba Sorghum propinquum genomic clone
           SP__Ba0069J15 3', DNA sequence
          Length = 819

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 cagtatttgtatgtgacaat 173
           ||||||||||||||||||||
Sbjct: 135 cagtatttgtatgtgacaat 116



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,631
Number of Sequences: 832831
Number of extensions: 111631
Number of successful extensions: 29351
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29344
Number of HSP's gapped (non-prelim): 7
length of query: 541
length of database: 491,359,669
effective HSP length: 19
effective length of query: 522
effective length of database: 475,535,880
effective search space: 248229729360
effective search space used: 248229729360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)