BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ1h07.yg.2.1
(357 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF489807.1|CF489807 POL1_59_F02.g1_A002 Pollen Sorghum b... 210 6e-053
gb|CD227862.1|CD227862 CCC1_56_H03.b1_A007 Callus culture/c... 163 1e-038
gb|BG102529.1|BG102529 RHIZ2_34_B12.g1_A003 Rhizome2 (RHIZ2... 86 2e-015
gb|BQ479087.1|BQ479087 pRC-1199 pRC Sorghum halepense cDNA ... 86 2e-015
gb|DN551914.1|DN551914 pSPR-RT-MR-H2_C06_C282 pSPR Sorghum ... 86 2e-015
gb|BG559141.1|BG559141 RHIZ2_55_B12.g1_A003 Rhizome2 (RHIZ2... 84 1e-014
gb|CW039698.1|CW039698 104_272_10505645_114_30389 Sorghum m... 78 6e-013
gb|CW039699.1|CW039699 104_272_10505645_115_30390 Sorghum m... 78 6e-013
gb|CW041615.1|CW041615 104_275_10506649_114_30284 Sorghum m... 78 6e-013
gb|CW171385.1|CW171385 104_582_11155714_116_36532_045 Sorgh... 78 6e-013
gb|CW177756.1|CW177756 104_591_11159198_116_36610_059 Sorgh... 78 6e-013
gb|CW256801.1|CW256801 104_722_11226991_148_35148_032 Sorgh... 78 6e-013
gb|CW321278.1|CW321278 104_814_11475462_116_35933_021 Sorgh... 78 6e-013
gb|CW387885.1|CW387885 fsbb001f072g19f0 Sorghum methylation... 78 6e-013
gb|BE356370.1|BE356370 DG1_124_G10.g1_A002 Dark Grown 1 (DG... 78 6e-013
gb|BF657393.1|BF657393 OV2_24_E08.g1_A002 Ovary 2 (OV2) Sor... 78 6e-013
gb|BG049318.1|BG049318 OV1_18_D11.g1_A002 Ovary 1 (OV1) Sor... 78 6e-013
gb|BG049527.1|BG049527 EM1_5_B12.g1_A002 Embryo 1 (EM1) Sor... 78 6e-013
gb|BG412512.1|BG412512 OV2_35_C06.g1_A002 Ovary 2 (OV2) Sor... 78 6e-013
gb|BG739434.1|BG739434 EM1_82_H04.g1_A002 Embryo 1 (EM1) So... 78 6e-013
gb|CD223757.1|CD223757 CCC1_30_D11.b1_A007 Callus culture/c... 78 6e-013
gb|CD227380.1|CD227380 CCC1_51_H01.b1_A007 Callus culture/c... 78 6e-013
gb|CD428079.1|CD428079 ETH1_32_E01.g1_A002 Ethylene-treated... 78 6e-013
gb|CN125015.1|CN125015 RHOH1_8_G11.b1_A002 Acid- and alkali... 78 6e-013
gb|CN134421.1|CN134421 OX1_26_F05.b1_A002 Oxidatively-stres... 78 6e-013
gb|CN143945.1|CN143945 WOUND1_19_G06.b1_A002 Wounded leaves... 78 6e-013
gb|CN144039.1|CN144039 WOUND1_19_G06.g1_A002 Wounded leaves... 78 6e-013
gb|CN146254.1|CN146254 WOUND1_39_D02.b1_A002 Wounded leaves... 78 6e-013
gb|CN146331.1|CN146331 WOUND1_39_D02.g1_A002 Wounded leaves... 78 6e-013
gb|BG556320.1|BG556320 EM1_68_E05.g1_A002 Embryo 1 (EM1) So... 76 2e-012
gb|CL191208.1|CL191208 104_410_10906632_114_32533_096 Sorgh... 74 1e-011
gb|CW115055.1|CW115055 104_490_11106333_148_34588_095 Sorgh... 74 1e-011
gb|CW229188.1|CW229188 104_670_11207171_116_37259_042 Sorgh... 74 1e-011
gb|CW323837.1|CW323837 104_818_11476843_116_35904_078 Sorgh... 74 1e-011
gb|BE360318.1|BE360318 DG1_62_E04.g1_A002 Dark Grown 1 (DG1... 74 1e-011
gb|BI211697.1|BI211697 IP1_60_G05.g1_A002 Immature pannicle... 74 1e-011
gb|CD431147.1|CD431147 ETH1_7_B06.b1_A002 Ethylene-treated ... 74 1e-011
gb|CF427057.1|CF427057 PH1_3_D05.b1_A002 Phosphorous-defici... 74 1e-011
gb|CF429158.1|CF429158 PH1_20_E04.b1_A002 Phosphorous-defic... 74 1e-011
gb|CF429637.1|CF429637 PH1_23_B04.b1_A002 Phosphorous-defic... 74 1e-011
gb|CN125883.1|CN125883 RHOH1_14_A01.b1_A002 Acid- and alkal... 74 1e-011
gb|CN126589.1|CN126589 RHOH1_18_C01.b1_A002 Acid- and alkal... 74 1e-011
gb|CN129367.1|CN129367 RHOH1_35_B11.b3_A002 Acid- and alkal... 74 1e-011
gb|CN129415.1|CN129415 RHOH1_35_G04.b3_A002 Acid- and alkal... 74 1e-011
gb|CN129456.1|CN129456 RHOH1_35_B11.g1_A002 Acid- and alkal... 74 1e-011
gb|CN131170.1|CN131170 RHOH1_46_G08.b1_A002 Acid- and alkal... 74 1e-011
gb|CN135165.1|CN135165 OX1_31_B04.b1_A002 Oxidatively-stres... 74 1e-011
gb|CX606110.1|CX606110 ANR1_1_E07.b1_A002 Anaerobic roots S... 74 1e-011
gb|CX609868.1|CX609868 ANR1_15_F01.b1_A002 Anaerobic roots ... 74 1e-011
gb|CX610369.1|CX610369 ANR1_18_F11.b1_A002 Anaerobic roots ... 74 1e-011
gb|CD432148.1|CD432148 ETH1_26_B01.b1_A002 Ethylene-treated... 72 4e-011
gb|CW041616.1|CW041616 104_275_10506649_115_30285 Sorghum m... 70 1e-010
gb|CX619969.1|CX619969 GABR1_49_B08.b1_A002 GA- or brassino... 70 1e-010
gb|CN126677.1|CN126677 RHOH1_18_C01.g1_A002 Acid- and alkal... 68 6e-010
gb|CN131258.1|CN131258 RHOH1_46_G08.g1_A002 Acid- and alkal... 68 6e-010
gb|CX606202.1|CX606202 ANR1_1_E07.g1_A002 Anaerobic roots S... 66 2e-009
gb|CX609949.1|CX609949 ANR1_15_F01.g1_A002 Anaerobic roots ... 66 2e-009
gb|CX610446.1|CX610446 ANR1_18_F11.g1_A002 Anaerobic roots ... 66 2e-009
gb|CD219638.1|CD219638 CCC1_58_F06.b1_A007 Callus culture/c... 64 9e-009
gb|CW229189.1|CW229189 104_670_11207171_148_37260_042 Sorgh... 62 4e-008
gb|CD229484.1|CD229484 CCC1_16_D06.b1_A007 Callus culture/c... 62 4e-008
gb|CN150200.1|CN150200 WOUND1_67_D03.g1_A002 Wounded leaves... 62 4e-008
gb|BG560741.1|BG560741 RHIZ2_64_B11.g1_A003 Rhizome2 (RHIZ2... 60 1e-007
gb|BE362334.1|BE362334 DG1_85_A02.g1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|BG158524.1|BG158524 RHIZ2_41_E04.g1_A003 Rhizome2 (RHIZ2... 56 2e-006
gb|BI245810.1|BI245810 IP1_64_F11.g1_A002 Immature pannicle... 56 2e-006
gb|CX620331.1|CX620331 GABR1_51_E02.b1_A002 GA- or brassino... 56 2e-006
gb|CW060787.1|CW060787 104_304_10520046_115_30144 Sorghum m... 52 3e-005
gb|CN124005.1|CN124005 RHOH1_2_B05.b1_A002 Acid- and alkali... 52 3e-005
gb|CF429640.1|CF429640 PH1_23_B11.b1_A002 Phosphorous-defic... 50 1e-004
gb|CN130196.1|CN130196 RHOH1_39_H10.g1_A002 Acid- and alkal... 50 1e-004
gb|CW125506.1|CW125506 104_505_11112364_148_34712_004 Sorgh... 48 5e-004
gb|CW134909.1|CW134909 104_519_11117560_116_34831_060 Sorgh... 48 5e-004
gb|CW134910.1|CW134910 104_519_11117560_148_34827_060 Sorgh... 48 5e-004
gb|CW256800.1|CW256800 104_722_11226991_116_35152_032 Sorgh... 48 5e-004
gb|CW323838.1|CW323838 104_818_11476843_148_35908_078 Sorgh... 48 5e-004
gb|CW372271.1|CW372271 fsbb001f048b19k0 Sorghum methylation... 48 5e-004
gb|BG240144.1|BG240144 OV1_18_D11.b1_A002 Ovary 1 (OV1) Sor... 48 5e-004
gb|BG560106.1|BG560106 RHIZ2_69_D11.b1_A003 Rhizome2 (RHIZ2... 48 5e-004
gb|BG739602.1|BG739602 EM1_82_H04.b1_A002 Embryo 1 (EM1) So... 48 5e-004
gb|BI245881.1|BI245881 IP1_64_F11.b1_A002 Immature pannicle... 48 5e-004
gb|CD219737.1|CD219737 CCC1_58_F06.g1_A007 Callus culture/c... 48 5e-004
gb|CD219794.1|CD219794 CCC1_58_F07.g1_A007 Callus culture/c... 48 5e-004
gb|CD223869.1|CD223869 CCC1_30_D11.g1_A007 Callus culture/c... 48 5e-004
gb|CD225188.1|CD225188 CCC1_38_A02.g1_A007 Callus culture/c... 48 5e-004
gb|CD227465.1|CD227465 CCC1_51_H01.g1_A007 Callus culture/c... 48 5e-004
gb|CD229498.1|CD229498 CCC1_16_D06.g1_A007 Callus culture/c... 48 5e-004
gb|CD236070.1|CD236070 SS1_25_E11.g1_A012 Salt-stressed see... 48 5e-004
gb|CD430094.1|CD430094 ETH1_13_H07.g1_A002 Ethylene-treated... 48 5e-004
gb|CD431281.1|CD431281 ETH1_7_B06.g1_A002 Ethylene-treated ... 48 5e-004
gb|CD432249.1|CD432249 ETH1_26_B01.g1_A002 Ethylene-treated... 48 5e-004
gb|CF427084.1|CF427084 PH1_3_D05.g1_A002 Phosphorous-defici... 48 5e-004
gb|CF427585.1|CF427585 PH1_16_B04.g1_A002 Phosphorous-defic... 48 5e-004
gb|CF429257.1|CF429257 PH1_20_E04.g1_A002 Phosphorous-defic... 48 5e-004
gb|CN124076.1|CN124076 RHOH1_2_B05.g1_A002 Acid- and alkali... 48 5e-004
gb|CN127847.1|CN127847 RHOH1_25_A03.g1_A002 Acid- and alkal... 48 5e-004
gb|CN129996.1|CN129996 RHOH1_38_E01.g1_A002 Acid- and alkal... 48 5e-004
gb|CN135238.1|CN135238 OX1_31_B04.g1_A002 Oxidatively-stres... 48 5e-004
gb|CN140959.1|CN140959 OX1_48_A09.g1_A002 Oxidatively-stres... 48 5e-004
gb|CN141913.1|CN141913 WOUND1_2_E01.g1_A002 Wounded leaves ... 48 5e-004
gb|CX620046.1|CX620046 GABR1_49_B08.g1_A002 GA- or brassino... 48 5e-004
gb|CX620407.1|CX620407 GABR1_51_E02.g1_A002 GA- or brassino... 48 5e-004
gb|CW061064.1|CW061064 104_304_10520199_114_30143 Sorghum m... 46 0.002
gb|CW067110.1|CW067110 104_314_10524068_114_30126 Sorghum m... 46 0.002
gb|CW189107.1|CW189107 104_610_11173790_116_37100_059 Sorgh... 46 0.002
gb|CW399257.1|CW399257 fsbb001f089a13f0 Sorghum methylation... 46 0.002
gb|BM323374.1|BM323374 PIC1_18_E10.b1_A002 Pathogen-infecte... 46 0.002
gb|CD430276.1|CD430276 ETH1_17_H06.g1_A002 Ethylene-treated... 46 0.002
gb|CN133353.1|CN133353 OX1_11_E08.g1_A002 Oxidatively-stres... 46 0.002
gb|CN134237.1|CN134237 OX1_25_D04.b1_A002 Oxidatively-stres... 46 0.002
gb|CN134318.1|CN134318 OX1_25_D04.g1_A002 Oxidatively-stres... 46 0.002
gb|CN134399.1|CN134399 OX1_26_D04.b1_A002 Oxidatively-stres... 46 0.002
gb|CN134481.1|CN134481 OX1_26_D04.g1_A002 Oxidatively-stres... 46 0.002
gb|CN134577.1|CN134577 OX1_27_E09.b1_A002 Oxidatively-stres... 46 0.002
gb|CN134664.1|CN134664 OX1_27_E09.g1_A002 Oxidatively-stres... 46 0.002
gb|CX606182.1|CX606182 ANR1_1_C10.g1_A002 Anaerobic roots S... 46 0.002
gb|CX614568.1|CX614568 GABR1_14_H01.g1_A002 GA- or brassino... 46 0.002
gb|CX616580.1|CX616580 GABR1_28_F03.g1_A002 GA- or brassino... 46 0.002
gb|CW115054.1|CW115054 104_490_11106333_116_34592_095 Sorgh... 44 0.008
gb|CW225715.1|CW225715 104_663_11204503_148_37208_024 Sorgh... 44 0.008
gb|CW389686.1|CW389686 fsbb001f075a01k0 Sorghum methylation... 44 0.008
gb|CW407264.1|CW407264 fsbb001f100k14f0 Sorghum methylation... 44 0.008
gb|CW463846.1|CW463846 fsbb001f212l24f0 Sorghum methylation... 44 0.008
gb|AW287233.2|AW287233 LG1_268_C03.b1_A002 Light Grown 1 (L... 44 0.008
gb|BE358945.1|BE358945 DG1_37_C09.b1_A002 Dark Grown 1 (DG1... 44 0.008
gb|BE362269.1|BE362269 DG1_85_A02.b1_A002 Dark Grown 1 (DG1... 44 0.008
gb|BG649399.1|BG649399 EM1_78_H11.b1_A002 Embryo 1 (EM1) So... 44 0.008
gb|CD222040.1|CD222040 CCC1_1_E10.g1_A007 Callus culture/ce... 44 0.008
gb|CD226700.1|CD226700 CCC1_47_B03.g1_A007 Callus culture/c... 44 0.008
gb|CD227643.1|CD227643 CCC1_52_B10.g1_A007 Callus culture/c... 44 0.008
gb|BG559467.1|BG559467 RHIZ2_55_B12.b1_A003 Rhizome2 (RHIZ2... 42 0.034
gb|BZ367428.1|BZ367428 id04d05.g1 WGS-SbicolorF (JM107 adap... 40 0.13
gb|BZ367792.1|BZ367792 id06f03.b1 WGS-SbicolorF (JM107 adap... 40 0.13
gb|CL159722.1|CL159722 104_349_10804467_116_31382_291 Sorgh... 40 0.13
gb|CW020721.1|CW020721 104_109_10409131_114_30493 Sorghum m... 40 0.13
gb|CW060786.1|CW060786 104_304_10520046_114_30143 Sorghum m... 40 0.13
gb|CW154770.1|CW154770 104_557_11145777_148_36360_047 Sorgh... 40 0.13
gb|CW186182.1|CW186182 104_604_11166433_116_36705_013 Sorgh... 40 0.13
gb|CW247381.1|CW247381 104_708_11221754_116_36078_009 Sorgh... 40 0.13
gb|CW321934.1|CW321934 104_815_11475820_116_35944_008 Sorgh... 40 0.13
gb|CW335482.1|CW335482 104_834_11483062_116_36083_089 Sorgh... 40 0.13
gb|CW335483.1|CW335483 104_834_11483062_148_36104_089 Sorgh... 40 0.13
gb|CW359786.1|CW359786 fsbb001f027j03k0 Sorghum methylation... 40 0.13
gb|BI245792.1|BI245792 IP1_64_D12.g1_A002 Immature pannicle... 40 0.13
gb|CD430458.1|CD430458 ETH1_19_F11.b1_A002 Ethylene-treated... 40 0.13
gb|CD430578.1|CD430578 ETH1_19_F11.g1_A002 Ethylene-treated... 40 0.13
gb|CN128492.1|CN128492 RHOH1_29_H02.g1_A002 Acid- and alkal... 40 0.13
gb|CX610193.1|CX610193 ANR1_17_E04.b1_A002 Anaerobic roots ... 40 0.13
gb|CX610279.1|CX610279 ANR1_17_E04.g1_A002 Anaerobic roots ... 40 0.13
>gb|CF489807.1|CF489807 POL1_59_F02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F02_A002 5', mRNA sequence
Length = 698
Score = 210 bits (106), Expect = 6e-053
Identities = 209/258 (81%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtttaggaggnnnnnctgcatnnnnnncgggcaganngt 146
|||||||||||||||||||||||| |||||| |||||| |||||||| ||
Sbjct: 493 cgccggcatcatcgacatccagttcaggagggtgccctgcatctaccccgggcagacggt 434
Query: 147 gaccttnnacatcgagcacggctcaaannnnnnntacttagcagtgctcgtcgagttcga 206
|||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 433 gaccttccacatcgagcacggctcaaaccccaactacttagcagtgcttgtcgagttcga 374
Query: 207 annnngcgatggcgatgtgnnncaggtggacatantggaggccaactctgggtggtggat 266
| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 373 agacggcgatggcgatgtggtccaggtggacatcatggaggccaactccgggtggtggac 314
Query: 267 gccgatgcgnnagtcgtggggatnnnnctggaggatggactccaagcgccnnctgcaggn 326
||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 313 gccgatgcgggagtcgtggggatccatctggaggatggactccaagcgccggctgcaggg 254
Query: 327 gcnnnnntcgctgcgcat 344
|| |||||||||||
Sbjct: 253 gcccttctcgctgcgcat 236
Score = 73.8 bits (37), Expect = 1e-011
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 4 ccagtcgccaagtaccactttgatctcagtggcacggcgtttggtggcatnncacagcc 62
|||||||| |||||||||||||| ||||| |||||||||||||||| ||| |||||||
Sbjct: 576 ccagtcgctaagtaccactttgacctcagcggcacggcgtttggtgccatggcacagcc 518
>gb|CD227862.1|CD227862 CCC1_56_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_H03_A007 3', mRNA sequence
Length = 582
Score = 163 bits (82), Expect = 1e-038
Identities = 138/164 (84%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
|||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct: 21 tacttagcagtgcttgtcgagttcgaagacggcgatggcgatgtggtccaggtggacatc 80
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||
Sbjct: 81 atggaggccaactccgggtggtggacgccgatgcgggagtcgtggggatccatctggagg 140
Query: 301 atggactccaagcgccnnctgcaggngcnnnnntcgctgcgcat 344
|||||||||||||||| ||||||| || |||||||||||
Sbjct: 141 atggactccaagcgccggctgcaggggcccttctcgctgcgcat 184
>gb|BG102529.1|BG102529 RHIZ2_34_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 599
Score = 85.7 bits (43), Expect = 2e-015
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| ||||||||| |
Sbjct: 117 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacctc 176
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 177 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 236
Query: 301 atggactcc 309
||||||||
Sbjct: 237 ctggactcc 245
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 23 cgccggcatcatcgacatccagtt 46
>gb|BQ479087.1|BQ479087 pRC-1199 pRC Sorghum halepense cDNA 5', mRNA sequence
Length = 834
Score = 85.7 bits (43), Expect = 2e-015
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| ||||||||| |
Sbjct: 259 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacctc 318
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 319 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 378
Query: 301 atggactcc 309
||||||||
Sbjct: 379 ctggactcc 387
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 165 cgccggcatcatcgacatccagtt 188
>gb|DN551914.1|DN551914 pSPR-RT-MR-H2_C06_C282 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 801
Score = 85.7 bits (43), Expect = 2e-015
Identities = 104/129 (80%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| ||||||||| |
Sbjct: 559 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacctc 500
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 499 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 440
Query: 301 atggactcc 309
||||||||
Sbjct: 439 ctggactcc 431
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 653 cgccggcatcatcgacatccagtt 630
>gb|BG559141.1|BG559141 RHIZ2_55_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 543
Score = 83.8 bits (42), Expect = 1e-014
Identities = 97/120 (80%)
Strand = Plus / Plus
Query: 190 gtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacatantggaggcc 249
|||||||||||||||||| |||| ||||| ||| ||||||||| | ||||||||
Sbjct: 2 gtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacctcatggaggcc 61
Query: 250 aactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggaggatggactcc 309
||||| |||| ||||| ||||||||| |||| ||||||| ||||||| ||||||||
Sbjct: 62 aactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggaggctggactcc 121
>gb|CW039698.1|CW039698 104_272_10505645_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505645, DNA
sequence
Length = 444
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 235 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 294
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 295 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 354
Query: 301 atggactcc 309
||||||||
Sbjct: 355 gtggactcc 363
>gb|CW039699.1|CW039699 104_272_10505645_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505645, DNA
sequence
Length = 750
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 636 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 577
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 576 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 517
Query: 301 atggactcc 309
||||||||
Sbjct: 516 ctggactcc 508
>gb|CW041615.1|CW041615 104_275_10506649_114_30284 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506649, DNA
sequence
Length = 762
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 633 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 692
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 693 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 752
Query: 301 atggactcc 309
||||||||
Sbjct: 753 ctggactcc 761
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 185 cgccggcatcatcgacatccagtt 208
>gb|CW171385.1|CW171385 104_582_11155714_116_36532_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155714, DNA
sequence
Length = 689
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 288 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 229
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 228 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 169
Query: 301 atggactcc 309
||||||||
Sbjct: 168 ctggactcc 160
>gb|CW177756.1|CW177756 104_591_11159198_116_36610_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159198, DNA
sequence
Length = 665
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 264 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 323
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 324 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 383
Query: 301 atggactcc 309
||||||||
Sbjct: 384 ctggactcc 392
>gb|CW256801.1|CW256801 104_722_11226991_148_35148_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226991, DNA
sequence
Length = 651
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 579 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 520
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 519 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 460
Query: 301 atggactcc 309
||||||||
Sbjct: 459 ctggactcc 451
>gb|CW321278.1|CW321278 104_814_11475462_116_35933_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475462, DNA
sequence
Length = 678
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 86 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 145
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 146 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 205
Query: 301 atggactcc 309
||||||||
Sbjct: 206 ctggactcc 214
>gb|CW387885.1|CW387885 fsbb001f072g19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072g19, DNA
sequence
Length = 756
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 546 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 605
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 606 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 665
Query: 301 atggactcc 309
||||||||
Sbjct: 666 ctggactcc 674
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 98 cgccggcatcatcgacatccagtt 121
>gb|BE356370.1|BE356370 DG1_124_G10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 650
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 143 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 202
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 203 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 262
Query: 301 atggactcc 309
||||||||
Sbjct: 263 ctggactcc 271
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 49 cgccggcatcatcgacatccagtt 72
>gb|BF657393.1|BF657393 OV2_24_E08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 610
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 105 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 164
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 165 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 224
Query: 301 atggactcc 309
||||||||
Sbjct: 225 ctggactcc 233
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 11 cgccggcatcatcgacatccagtt 34
>gb|BG049318.1|BG049318 OV1_18_D11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 638
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 117 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 176
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 177 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 236
Query: 301 atggactcc 309
||||||||
Sbjct: 237 ctggactcc 245
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 23 cgccggcatcatcgacatccagtt 46
>gb|BG049527.1|BG049527 EM1_5_B12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 585
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 129 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 188
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 189 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 248
Query: 301 atggactcc 309
||||||||
Sbjct: 249 ctggactcc 257
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 35 cgccggcatcatcgacatccagtt 58
>gb|BG412512.1|BG412512 OV2_35_C06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 478
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 143 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 202
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 203 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 262
Query: 301 atggactcc 309
||||||||
Sbjct: 263 ctggactcc 271
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 49 cgccggcatcatcgacatccagtt 72
>gb|BG739434.1|BG739434 EM1_82_H04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 77 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 136
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 137 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 196
Query: 301 atggactcc 309
||||||||
Sbjct: 197 ctggactcc 205
>gb|CD223757.1|CD223757 CCC1_30_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_D11_A007 3', mRNA sequence
Length = 615
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 79 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 138
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 139 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 198
Query: 301 atggactcc 309
||||||||
Sbjct: 199 ctggactcc 207
>gb|CD227380.1|CD227380 CCC1_51_H01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_H01_A007 3', mRNA sequence
Length = 616
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 81 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 140
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 141 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 200
Query: 301 atggactcc 309
||||||||
Sbjct: 201 ctggactcc 209
>gb|CD428079.1|CD428079 ETH1_32_E01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_32_E01_A002 5', mRNA sequence
Length = 456
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 236 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 295
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 296 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 355
Query: 301 atggactcc 309
||||||||
Sbjct: 356 ctggactcc 364
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 142 cgccggcatcatcgacatccagtt 165
>gb|CN125015.1|CN125015 RHOH1_8_G11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_G11_A002 3', mRNA sequence
Length = 781
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 245 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 304
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 305 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 364
Query: 301 atggactcc 309
||||||||
Sbjct: 365 ctggactcc 373
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 151 cgccggcatcatcgacatccagtt 174
>gb|CN134421.1|CN134421 OX1_26_F05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F05_A002 3', mRNA sequence
Length = 832
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 300 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 359
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 360 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 419
Query: 301 atggactcc 309
||||||||
Sbjct: 420 ctggactcc 428
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 206 cgccggcatcatcgacatccagtt 229
>gb|CN143945.1|CN143945 WOUND1_19_G06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_G06_A002 3', mRNA sequence
Length = 588
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 51 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 110
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 111 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 170
Query: 301 atggactcc 309
||||||||
Sbjct: 171 ctggactcc 179
>gb|CN144039.1|CN144039 WOUND1_19_G06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_19_G06_A002 5', mRNA sequence
Length = 677
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 430 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 489
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 490 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 549
Query: 301 atggactcc 309
||||||||
Sbjct: 550 ctggactcc 558
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 336 cgccggcatcatcgacatccagtt 359
>gb|CN146254.1|CN146254 WOUND1_39_D02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D02_A002 3', mRNA sequence
Length = 617
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 81 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 140
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 141 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 200
Query: 301 atggactcc 309
||||||||
Sbjct: 201 ctggactcc 209
>gb|CN146331.1|CN146331 WOUND1_39_D02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D02_A002 5', mRNA sequence
Length = 816
Score = 77.8 bits (39), Expect = 6e-013
Identities = 103/129 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || ||||||||||| |||||| |||| ||||| ||| ||||||||| |
Sbjct: 591 tacttcgcggtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctc 650
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| |||| ||||| ||||||||| |||| ||||||| |||||||
Sbjct: 651 atggaggccaactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggagg 710
Query: 301 atggactcc 309
||||||||
Sbjct: 711 ctggactcc 719
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 497 cgccggcatcatcgacatccagtt 520
>gb|BG556320.1|BG556320 EM1_68_E05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 519
Score = 75.8 bits (38), Expect = 2e-012
Identities = 96/120 (80%)
Strand = Plus / Plus
Query: 190 gtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacatantggaggcc 249
||||||||||| |||||| |||| ||||| ||| ||||||||| | ||||||||
Sbjct: 7 gtgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctcatggaggcc 66
Query: 250 aactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggaggatggactcc 309
||||| |||| ||||| ||||||||| |||| ||||||| ||||||| ||||||||
Sbjct: 67 aactccgggtcgtggacgccgatgcgcgagtcctggggatccatctggaggctggactcc 126
>gb|CL191208.1|CL191208 104_410_10906632_114_32533_096 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906632, DNA
sequence
Length = 714
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 421 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 362
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 361 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 302
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 301 ctggacgccaa 291
>gb|CW115055.1|CW115055 104_490_11106333_148_34588_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106333, DNA
sequence
Length = 489
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 272 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 213
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 212 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 153
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 152 ctggacgccaa 142
>gb|CW229188.1|CW229188 104_670_11207171_116_37259_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207171, DNA
sequence
Length = 621
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 330 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 271
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 270 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 211
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 210 ctggacgccaa 200
>gb|CW323837.1|CW323837 104_818_11476843_116_35904_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476843, DNA
sequence
Length = 734
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Minus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 146 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 87
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 86 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 27
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 26 ctggacgccaa 16
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 492 cgccggcatcatcgacatccagtt 469
>gb|BE360318.1|BE360318 DG1_62_E04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 536
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 169 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 228
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 229 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 288
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 289 ctggacgccaa 299
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 75 cgccggcatcatcgacatccagtt 98
>gb|BI211697.1|BI211697 IP1_60_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 73.8 bits (37), Expect = 1e-011
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 191 tgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacatantggaggcca 250
|||||||||| |||||| |||| ||||| ||| ||||||||| | |||||||||
Sbjct: 1 tgctcgtcgaattcgaagacggcgacggcgacgtggtgcaggtggacctcatggaggcca 60
Query: 251 actctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggaggatggactcc 309
|||| |||| ||||| ||||||||| |||| ||||||| ||||||| ||||||||
Sbjct: 61 actccgggtcgtggacgccgatgcgcgagtcctggggatccatctggaggctggactcc 119
>gb|CD431147.1|CD431147 ETH1_7_B06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_7_B06_A002 3', mRNA sequence
Length = 571
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 101 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 160
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 161 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 220
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 221 ctggacgccaa 231
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 7 cgccggcatcatcgacatccagtt 30
>gb|CF427057.1|CF427057 PH1_3_D05.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_3_D05_A002 3', mRNA sequence
Length = 588
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 97 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 156
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 157 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 216
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 217 ctggacgccaa 227
Score = 42.1 bits (21), Expect = 0.034
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
|||||||||||| |||||||||||
Sbjct: 3 cgccggcatcatngacatccagtt 26
>gb|CF429158.1|CF429158 PH1_20_E04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_20_E04_A002 3', mRNA sequence
Length = 558
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 79 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 138
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 139 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 198
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 199 ctggacgccaa 209
>gb|CF429637.1|CF429637 PH1_23_B04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_23_B04_A002 3', mRNA sequence
Length = 573
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 97 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 156
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 157 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 216
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 217 ctggacgccaa 227
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 3 cgccggcatcatcgacatccagtt 26
>gb|CN125883.1|CN125883 RHOH1_14_A01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_A01_A002 3', mRNA sequence
Length = 620
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 150 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 209
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 210 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 269
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 270 ctggacgccaa 280
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 56 cgccggcatcatcgacatccagtt 79
>gb|CN126589.1|CN126589 RHOH1_18_C01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_C01_A002 3', mRNA sequence
Length = 680
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 218 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 277
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 278 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 337
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 338 ctggacgccaa 348
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 124 cgccggcatcatcgacatccagtt 147
>gb|CN129367.1|CN129367 RHOH1_35_B11.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_B11_A002 3', mRNA sequence
Length = 776
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 300 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 359
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 360 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 419
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 420 ctggacgccaa 430
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 206 cgccggcatcatcgacatccagtt 229
>gb|CN129415.1|CN129415 RHOH1_35_G04.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_G04_A002 3', mRNA sequence
Length = 695
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 222 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 281
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 282 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 341
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 342 ctggacgccaa 352
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 128 cgccggcatcatcgacatccagtt 151
>gb|CN129456.1|CN129456 RHOH1_35_B11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_B11_A002 5', mRNA sequence
Length = 836
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 617 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 676
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 677 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 736
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 737 ctggacgccaa 747
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 523 cgccggcatcatcgacatccagtt 546
>gb|CN131170.1|CN131170 RHOH1_46_G08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_G08_A002 3', mRNA sequence
Length = 755
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 284 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 343
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 344 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 403
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 404 ctggacgccaa 414
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 190 cgccggcatcatcgacatccagtt 213
>gb|CN135165.1|CN135165 OX1_31_B04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_31_B04_A002 3', mRNA sequence
Length = 681
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 205 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 264
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 265 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 324
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 325 ctggacgccaa 335
Score = 40.1 bits (20), Expect = 0.13
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
|||||||||||| |||||||||||
Sbjct: 111 cgccggcatcatagacatccagtt 134
>gb|CX606110.1|CX606110 ANR1_1_E07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_E07_A002 3', mRNA sequence
Length = 668
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 193 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 252
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 253 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 312
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 313 ctggacgccaa 323
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 99 cgccggcatcatcgacatccagtt 122
>gb|CX609868.1|CX609868 ANR1_15_F01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_F01_A002 3', mRNA sequence
Length = 775
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 300 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 359
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 360 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 419
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 420 ctggacgccaa 430
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 206 cgccggcatcatcgacatccagtt 229
>gb|CX610369.1|CX610369 ANR1_18_F11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_18_F11_A002 3', mRNA sequence
Length = 739
Score = 73.8 bits (37), Expect = 1e-011
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 181 tacttagcagtgctcgtcgagttcgaannnngcgatggcgatgtgnnncaggtggacata 240
||||| || |||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 308 tacttcgcggtgctcgtcgagttcgaagacggcgacggcgacgtggtgcaggtggacatc 367
Query: 241 ntggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggagg 300
||||||||||||| || | |||| ||||||||| |||| ||||||| |||||||
Sbjct: 368 atggaggccaactccggctactggacgccgatgcgcgagtcctggggatccatctggagg 427
Query: 301 atggactccaa 311
||||| ||||
Sbjct: 428 ctggacgccaa 438
Score = 48.1 bits (24), Expect = 5e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 214 cgccggcatcatcgacatccagtt 237
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,885
Number of Sequences: 832831
Number of extensions: 38885
Number of successful extensions: 9990
Number of sequences better than 0.5: 149
Number of HSP's better than 0.5 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9670
Number of HSP's gapped (non-prelim): 317
length of query: 357
length of database: 491,359,669
effective HSP length: 19
effective length of query: 338
effective length of database: 475,535,880
effective search space: 160731127440
effective search space used: 160731127440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)