BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d02.yg.2.1
(541 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG465581.1|BG465581 RHIZ2_46_C08.b1_A003 Rhizome2 (RHIZ2... 504 e-141
gb|AW671741.1|AW671741 LG1_351_F12.b1_A002 Light Grown 1 (L... 268 5e-070
gb|BG241791.1|BG241791 RHIZ2_50_C04.b1_A003 Rhizome2 (RHIZ2... 190 9e-047
gb|CW451575.1|CW451575 fsbb001f191l07k0 Sorghum methylation... 184 6e-045
gb|CW132353.1|CW132353 104_515_11116166_116_34799_053 Sorgh... 100 3e-019
gb|CN143487.1|CN143487 WOUND1_16_C08.g1_A002 Wounded leaves... 98 1e-018
gb|CL197391.1|CL197391 104_424_10943712_114_32385_092 Sorgh... 92 6e-017
gb|CW082439.1|CW082439 104_424_10943712_114_32336_092 Sorgh... 92 6e-017
gb|CW082986.1|CW082986 104_425_10944071_114_32350_092 Sorgh... 92 6e-017
gb|CW451574.1|CW451574 fsbb001f191l07f0 Sorghum methylation... 86 4e-015
gb|CW132354.1|CW132354 104_515_11116166_148_34795_053 Sorgh... 68 9e-010
gb|CN144920.1|CN144920 WOUND1_25_F02.g1_A002 Wounded leaves... 52 5e-005
gb|CW234509.1|CW234509 104_688_11214040_116_37392_060 Sorgh... 50 2e-004
gb|CW484699.1|CW484699 fsbb001f247a01f0 Sorghum methylation... 50 2e-004
gb|CL150770.1|CL150770 104_332_10778766_114_31357_318 Sorgh... 46 0.003
gb|CW053211.1|CW053211 104_293_10515837_114_30184 Sorghum m... 46 0.003
gb|CW053338.1|CW053338 104_293_10515908_114_30185 Sorghum m... 46 0.003
gb|CW188764.1|CW188764 104_608_11173219_116_36729_068 Sorgh... 46 0.003
gb|BM324257.1|BM324257 PIC1_26_B11.b1_A002 Pathogen-infecte... 46 0.003
gb|CW189847.1|CW189847 104_611_11174183_148_36746_092 Sorgh... 44 0.013
gb|BM323743.1|BM323743 PIC1_22_G06.b1_A002 Pathogen-infecte... 44 0.013
gb|CW313479.1|CW313479 104_803_11471307_116_35786_004 Sorgh... 42 0.052
gb|CW363857.1|CW363857 fsbb001f035k11f0 Sorghum methylation... 42 0.052
gb|CW363858.1|CW363858 fsbb001f035k11k0 Sorghum methylation... 42 0.052
gb|CW164218.1|CW164218 104_572_11151871_116_36465_030 Sorgh... 40 0.20
>gb|BG465581.1|BG465581 RHIZ2_46_C08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 504 bits (254), Expect = e-141
Identities = 346/377 (91%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaaggacgacatagaa 69
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 193 gatggaagcaatggcgacgtggctgctgatcattatcatcgatacaaggaggacatagaa 252
Query: 70 atgatgcattcgattggcctcggctcttacagattctcattgtcatggtcgagaattctt 129
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |||
Sbjct: 253 atgatgcattcgattggcctcgactcctacagattctcattgtcctggtcgagaatactt 312
Query: 130 ccaaagggtcgcttcggaggtgttaatcaggcaggcgttaaattctacaatagcctcatc 189
||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||
Sbjct: 313 ccaaagggtcgcttcggagatgttaatccggtaggcgttaaattctacaatagtctcatc 372
Query: 190 aacggactgctagaaaaagggatacaaccatttgtgacgatcaaccactatgacatacct 249
|||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 373 aacgacatgctacaaaaagggatagaaccatttgtgacgatcaatcactatgacataccc 432
Query: 250 gaagaactccaagaaagatacaattcttggttgaacctagagattcaggaggacttcacc 309
|| ||||||||| |||||||| ||| ||||||| || ||||||||||||||||||||||
Sbjct: 433 gaggaactccaacaaagatacggttcctggttgagcccagagattcaggaggacttcacc 492
Query: 310 tacttcgctgagctttgcttcaagatntttggtgaccgagtaaagcattgggtcacattc 369
||||| |||||| | ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 493 tactttgctgagatatgcttcaagatgtttggtgaccgagtaaagcattgggctacattc 552
Query: 370 aatgagccaaatcttat 386
||||||||||| |||||
Sbjct: 553 aatgagccaaaccttat 569
>gb|AW671741.1|AW671741 LG1_351_F12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 663
Score = 268 bits (135), Expect = 5e-070
Identities = 269/321 (83%)
Strand = Plus / Plus
Query: 215 aaccatttgtgacgatcaaccactatgacatacctgaagaactccaagaaagatacaatt 274
||||||||||||||||||| |||||||||||||| || ||||||||| |||||||| ||
Sbjct: 10 aaccatttgtgacgatcaatcactatgacatacccgaggaactccaacaaagatacggtt 69
Query: 275 cttggttgaacctagagattcaggaggacttcacctacttcgctgagctttgcttcaaga 334
| ||||||| || ||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct: 70 cctggttgagcccagagattcaggaggacttcacctactttgctgagatatgcttcaaga 129
Query: 335 tntttggtgaccgagtaaagcattgggtcacattcaatgagccaaatcttattnnaaagc 394
| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 130 tgtttggtgaccgagtaaagcattgggctacattcaatgagccaaaccttatggcaaagc 189
Query: 395 ttgcatactccannngggcatttccacccaaccnttgttccgagccatatgngaaannnn 454
| || |||| || | ||||||||| | || |||||| |||||| || ||||
Sbjct: 190 tcgcgtacttcaacggcaaatttccaccaagccactgttccaagccatttgggaaatgca 249
Query: 455 attcaggnaattcatcaactgannnntacattgnngcgcataacatgatattagctcatg 514
|||| || |||||||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct: 250 attctgggaattcatcaactgagccctacattgcagcgcataacatgatactagctcatg 309
Query: 515 caaagannntcaacatctaca 535
|||||| |||| |||||||
Sbjct: 310 caaagacggtcaatatctaca 330
>gb|BG241791.1|BG241791 RHIZ2_50_C04.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 308
Score = 190 bits (96), Expect = 9e-047
Identities = 111/116 (95%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaaggacgacatagaa 69
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 193 gatggaagcaatggcgacgtggctgctgatcattatcatcgatacaaggaggacatagaa 252
Query: 70 atgatgcattcgattggcctcggctcttacagattctcattgtcatggtcgagaat 125
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct: 253 atgatgcattcgattggcctcgactcctacagattctcattgtcctggtcgagaat 308
>gb|CW451575.1|CW451575 fsbb001f191l07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191l07, DNA
sequence
Length = 635
Score = 184 bits (93), Expect = 6e-045
Identities = 200/243 (82%)
Strand = Plus / Minus
Query: 297 ggaggacttcacctacttcgctgagctttgcttcaagatntttggtgaccgagtaaagca 356
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 502 ggaggacttcacctactttgctgagctttgcttcaagatgtttggtgaccgagtaaagca 443
Query: 357 ttgggtcacattcaatgagccaaatcttattnnaaagcttgcatactccannngggcatt 416
|||| |||||||||||| ||||| || | |||||| |||||||| || ||
Sbjct: 442 ctgggctacattcaatgaggcaaattttctgacaaagctcaaatactccatggggaagtt 383
Query: 417 tccacccaaccnttgttccgagccatatgngaaannnnattcaggnaattcatcaactga 476
|||||||| || ||||||||||| |||| |||| |||| || |||||||| |||||
Sbjct: 382 tccacccagccactgttccgagccgtatgggaaatgcaattctggcaattcatcgactga 323
Query: 477 nnnntacattgnngcgcataacatgatattagctcatgcaaagannntcaacatctacag 536
||||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 322 gccctacattgcagcgcataacatgatattagctcatgcaatggcagtcaacatctacag 263
Query: 537 aaa 539
|||
Sbjct: 262 aaa 260
Score = 48.1 bits (24), Expect = 8e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 238 tatgacatacctgaagaactccaagaaagatacaattcttggttgaacctagagattcag 297
||||||||||| | |||||||||||||||||| || ||||||| || ||||||||||
Sbjct: 635 tatgacataccccaggaactccaagaaagatacggctcctggttgagcccagagattcag 576
>gb|CW132353.1|CW132353 104_515_11116166_116_34799_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116166, DNA
sequence
Length = 729
Score = 99.6 bits (50), Expect = 3e-019
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 56 aggacgacatagaaatgatgcattcgattggcctcggctcttacagattctcattgtcat 115
|||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||| |
Sbjct: 162 aggacgacatagaaatgatgcatttgatgggcctcgactcctacagattctcattgtcct 103
Query: 116 ggtcgagaattcttccaa 133
|||| ||||| |||||||
Sbjct: 102 ggtcaagaatacttccaa 85
Score = 73.8 bits (37), Expect = 1e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagg 58
||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 332 gatggaagcaatggcgacgtggcctcagaccattatcatcgatacaagg 284
>gb|CN143487.1|CN143487 WOUND1_16_C08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_C08_A002 5', mRNA sequence
Length = 811
Score = 97.6 bits (49), Expect = 1e-018
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 415 tttccacccaaccnttgttccgagccatatgngaaannnnattcaggnaattcatcaact 474
|||||||||| || ||||||||||| |||| |||| |||| || |||||||| |||
Sbjct: 64 tttccacccagccactgttccgagccgtatgggaaatgcaattctggcaattcatcgact 123
Query: 475 gannnntacattgnngcgcataacatgatattagctcatgcaaagannntcaacatctac 534
|| ||||||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct: 124 gagccctacattgcagcgcataacatgatattagctcatgcaatggcagtcaacatctac 183
Query: 535 agaaa 539
|||||
Sbjct: 184 agaaa 188
>gb|CL197391.1|CL197391 104_424_10943712_114_32385_092 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943712, DNA
sequence
Length = 639
Score = 91.7 bits (46), Expect = 6e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 56 aggacgacatagaaatgatgcattcgattggcctcggctcttacagattctcattgtcat 115
|||| ||||||||||| ||||||||| ||||||||| || ||||||||||||||||| |
Sbjct: 190 aggaggacatagaaataatgcattcgcttggcctcgactgctacagattctcattgtcct 131
Query: 116 ggtcgagaattcttccaa 133
|||||||||| |||||||
Sbjct: 130 ggtcgagaatacttccaa 113
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 4 attgacgatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagg 58
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 363 attgaggatggaagcaatggcgacgtggccactgaccattatcatcgatacaagg 309
>gb|CW082439.1|CW082439 104_424_10943712_114_32336_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943712, DNA
sequence
Length = 542
Score = 91.7 bits (46), Expect = 6e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 56 aggacgacatagaaatgatgcattcgattggcctcggctcttacagattctcattgtcat 115
|||| ||||||||||| ||||||||| ||||||||| || ||||||||||||||||| |
Sbjct: 189 aggaggacatagaaataatgcattcgcttggcctcgactgctacagattctcattgtcct 130
Query: 116 ggtcgagaattcttccaa 133
|||||||||| |||||||
Sbjct: 129 ggtcgagaatacttccaa 112
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 4 attgacgatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagg 58
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 362 attgaggatggaagcaatggcgacgtggccactgaccattatcatcgatacaagg 308
>gb|CW082986.1|CW082986 104_425_10944071_114_32350_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944071, DNA
sequence
Length = 412
Score = 91.7 bits (46), Expect = 6e-017
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 56 aggacgacatagaaatgatgcattcgattggcctcggctcttacagattctcattgtcat 115
|||| ||||||||||| ||||||||| ||||||||| || ||||||||||||||||| |
Sbjct: 138 aggaggacatagaaataatgcattcgcttggcctcgactgctacagattctcattgtcct 79
Query: 116 ggtcgagaattcttccaa 133
|||||||||| |||||||
Sbjct: 78 ggtcgagaatacttccaa 61
Score = 77.8 bits (39), Expect = 9e-013
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 4 attgacgatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagg 58
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 312 attgaggatggaagcaatggtgacgtggccactgaccattatcatcgatacaagg 258
>gb|CW451574.1|CW451574 fsbb001f191l07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191l07, DNA
sequence
Length = 275
Score = 85.7 bits (43), Expect = 4e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 4 attgacgatggaagcaatggcgacgtggctgctgaccattatcatcgatacaagg 58
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 150 attgaggatggaagcaatggcgacgtggccactgaccattatcatcgatacaagg 204
>gb|CW132354.1|CW132354 104_515_11116166_148_34795_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116166, DNA
sequence
Length = 723
Score = 67.9 bits (34), Expect = 9e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 10 gatggaagcaatggcgacgtggctgctgaccattatcatcgataca 55
||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 611 gatggaagcaatggcgacgtggcctcagaccattatcatcgataca 656
>gb|CN144920.1|CN144920 WOUND1_25_F02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_F02_A002 5', mRNA sequence
Length = 753
Score = 52.0 bits (26), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 325 tgcttcaagatntttggtgaccgagtaaagcattgggtcacattcaatgagccaaat 381
||||||| ||| ||||||||||||||||| |||| | ||||| ||||||||||||
Sbjct: 537 tgcttcaggatgtttggtgaccgagtaaaattttggataacatttaatgagccaaat 593
>gb|CW234509.1|CW234509 104_688_11214040_116_37392_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214040, DNA
sequence
Length = 712
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| |||||||| ||||||||| |||| |||||||||||
Sbjct: 333 tttggggaccgagtgaagcattggatcaccttcaatgagcc 293
>gb|CW484699.1|CW484699 fsbb001f247a01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247a01, DNA
sequence
Length = 588
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
||||| |||||||| ||||||||| |||| |||||||||||
Sbjct: 79 tttggggaccgagtgaagcattggatcaccttcaatgagcc 119
>gb|CL150770.1|CL150770 104_332_10778766_114_31357_318 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778766, DNA
sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 343 gaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||| ||||||||| |||| |||||||||||
Sbjct: 787 gaccgagtgaagcattggatcaccttcaatgagcc 753
>gb|CW053211.1|CW053211 104_293_10515837_114_30184 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515837, DNA
sequence
Length = 664
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 349 gtaaagcattgggtcacattcaatgagccaa 379
|||||||||||| | ||||||||||||||||
Sbjct: 18 gtaaagcattggtttacattcaatgagccaa 48
>gb|CW053338.1|CW053338 104_293_10515908_114_30185 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515908, DNA
sequence
Length = 660
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 349 gtaaagcattgggtcacattcaatgagccaa 379
|||||||||||| | ||||||||||||||||
Sbjct: 18 gtaaagcattggtttacattcaatgagccaa 48
>gb|CW188764.1|CW188764 104_608_11173219_116_36729_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173219, DNA
sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 349 gtaaagcattgggtcacattcaatgagccaa 379
|||||||||||| | ||||||||||||||||
Sbjct: 590 gtaaagcattggtttacattcaatgagccaa 560
>gb|BM324257.1|BM324257 PIC1_26_B11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 487
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 349 gtaaagcattgggtcacattcaatgagccaa 379
|||||||||||| | ||||||||||||||||
Sbjct: 217 gtaaagcattggtttacattcaatgagccaa 247
>gb|CW189847.1|CW189847 104_611_11174183_148_36746_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174183, DNA
sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.013
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 325 tgcttcaagatntttggtgaccgagtaaa 353
||||||||||| |||||||| ||||||||
Sbjct: 289 tgcttcaagatgtttggtgatcgagtaaa 317
>gb|BM323743.1|BM323743 PIC1_22_G06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.013
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 325 tgcttcaagatntttggtgaccgagtaaa 353
||||||||||| |||||||| ||||||||
Sbjct: 115 tgcttcaagatgtttggtgatcgagtaaa 143
>gb|CW313479.1|CW313479 104_803_11471307_116_35786_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471307, DNA
sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.052
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || || ||| |||| |||||||||||
Sbjct: 57 tttggtgaccgagtgaaacactggatcacgttcaatgagcc 97
>gb|CW363857.1|CW363857 fsbb001f035k11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035k11, DNA
sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.052
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || || ||| |||| |||||||||||
Sbjct: 417 tttggtgaccgagtgaaacactggatcacgttcaatgagcc 377
>gb|CW363858.1|CW363858 fsbb001f035k11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f035k11, DNA
sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.052
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 337 tttggtgaccgagtaaagcattgggtcacattcaatgagcc 377
|||||||||||||| || || ||| |||| |||||||||||
Sbjct: 375 tttggtgaccgagtgaaacactggatcacgttcaatgagcc 415
>gb|CW164218.1|CW164218 104_572_11151871_116_36465_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151871, DNA
sequence
Length = 758
Score = 40.1 bits (20), Expect = 0.20
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 340 ggtgaccgagtaaagcattgggtcacattcaatgagccaa 379
||||| || |||||||| ||| | ||||||||||||||||
Sbjct: 310 ggtgatcgcgtaaagcactggtttacattcaatgagccaa 271
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94,940
Number of Sequences: 832831
Number of extensions: 94940
Number of successful extensions: 24307
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24269
Number of HSP's gapped (non-prelim): 38
length of query: 541
length of database: 491,359,669
effective HSP length: 19
effective length of query: 522
effective length of database: 475,535,880
effective search space: 248229729360
effective search space used: 248229729360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)