BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW029687.1|CW029687 104_257_10499816_116_30402 Sorghum m... 111 8e-023
gb|CW313304.1|CW313304 104_803_11471215_148_35790_024 Sorgh... 111 8e-023
gb|CN144254.1|CN144254 WOUND1_21_C07.b1_A002 Wounded leaves... 92 7e-017
gb|CN148869.1|CN148869 WOUND1_59_G08.b1_A002 Wounded leaves... 88 1e-015
gb|BZ422372.1|BZ422372 id52h06.b1 WGS-SbicolorF (DH5a methy... 72 7e-011
gb|BZ423750.1|BZ423750 id52h06.g1 WGS-SbicolorF (DH5a methy... 72 7e-011
gb|CB926745.1|CB926745 ABA1_10_F12.b1_A012 Abscisic acid-tr... 62 6e-008
gb|CB926721.1|CB926721 ABA1_10_F10.b1_A012 Abscisic acid-tr... 48 0.001
gb|CN149964.1|CN149964 WOUND1_66_B10.b1_A002 Wounded leaves... 48 0.001
gb|BI098100.1|BI098100 IP1_32_A06.g1_A002 Immature pannicle... 42 0.059
gb|CW434838.1|CW434838 fsbb001f150l16k0 Sorghum methylation... 38 0.92
gb|CW435026.1|CW435026 fsbb001f150p20k0 Sorghum methylation... 38 0.92
gb|CW435030.1|CW435030 fsbb001f150p22k0 Sorghum methylation... 38 0.92
gb|CX609350.1|CX609350 ANR1_12_D11.b1_A002 Anaerobic roots ... 38 0.92
gb|CX614440.1|CX614440 GABR1_14_C06.b1_A002 GA- or brassino... 38 0.92
gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete s... 38 0.92
gb|CW269113.1|CW269113 104_740_11401686_116_35319_027 Sorgh... 36 3.6
gb|CW269114.1|CW269114 104_740_11401686_148_35315_027 Sorgh... 36 3.6
gb|CW272260.1|CW272260 104_744_11403356_116_36228_072 Sorgh... 36 3.6
gb|CW386139.1|CW386139 fsbb001f069o08f0 Sorghum methylation... 36 3.6
gb|CN148951.1|CN148951 WOUND1_59_G08.g1_A002 Wounded leaves... 36 3.6
gb|CN149300.1|CN149300 WOUND1_61_H11.g1_A002 Wounded leaves... 36 3.6
>gb|CW029687.1|CW029687 104_257_10499816_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499816, DNA
sequence
Length = 808
Score = 111 bits (56), Expect = 8e-023
Identities = 164/200 (82%)
Strand = Plus / Minus
Query: 289 tggtgggaggatatgcagatcggatcaaaacttcctttcgcacgagatagaatcgtggag 348
|||||| ||||||| ||||| | ||||| ||||| || || ||||||||| ||||||||
Sbjct: 438 tggtggaaggatatacagattgaatcaaggcttccatttgctcgagatagagtcgtggag 379
Query: 349 tgttttctatggatcttaggagtatactatgaaccgtgtcattcaagagcccggataata 408
|| | | | ||||| ||||| |||||||| ||||| ||| ||||||||| ||| ||||||
Sbjct: 378 tgctatttgtggatattaggggtatactacgaaccatgttattcaagaggccgaataata 319
Query: 409 ttgacaatggttatcgccatcgtgacactcttggacgatattttcgattctttcgcgacc 468
| |||||| |||||||||| ||||| || ||||| ||||||| ||||||| || ||
Sbjct: 318 gtaacaatgattatcgccattgtgacccttttggatgatatttatgattcttatgcaact 259
Query: 469 ccacaagaatgtgaaatact 488
||| ||||||||||| ||||
Sbjct: 258 ccagaagaatgtgaattact 239
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 160 gagtcaaagtattacatc 177
||||||||||||||||||
Sbjct: 668 gagtcaaagtattacatc 651
>gb|CW313304.1|CW313304 104_803_11471215_148_35790_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471215, DNA
sequence
Length = 741
Score = 111 bits (56), Expect = 8e-023
Identities = 164/200 (82%)
Strand = Plus / Minus
Query: 289 tggtgggaggatatgcagatcggatcaaaacttcctttcgcacgagatagaatcgtggag 348
|||||| ||||||| ||||| | ||||| ||||| || || ||||||||| ||||||||
Sbjct: 345 tggtggaaggatatacagattgaatcaaggcttccatttgctcgagatagagtcgtggag 286
Query: 349 tgttttctatggatcttaggagtatactatgaaccgtgtcattcaagagcccggataata 408
|| | | | ||||| ||||| |||||||| ||||| ||| ||||||||| ||| ||||||
Sbjct: 285 tgctatttgtggatattaggggtatactacgaaccatgttattcaagaggccgaataata 226
Query: 409 ttgacaatggttatcgccatcgtgacactcttggacgatattttcgattctttcgcgacc 468
| |||||| |||||||||| ||||| || ||||| ||||||| ||||||| || ||
Sbjct: 225 gtaacaatgattatcgccattgtgacccttttggatgatatttatgattcttatgcaact 166
Query: 469 ccacaagaatgtgaaatact 488
||| ||||||||||| ||||
Sbjct: 165 ccagaagaatgtgaattact 146
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 160 gagtcaaagtattacatc 177
||||||||||||||||||
Sbjct: 575 gagtcaaagtattacatc 558
>gb|CN144254.1|CN144254 WOUND1_21_C07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_21_C07_A002 3', mRNA sequence
Length = 823
Score = 91.7 bits (46), Expect = 7e-017
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 439 ttggacgatattttcgattctttcgcgaccccacaagaatgtgaaatactcactaattgc 498
||||| ||||||| ||||||| || || ||| ||||||||||| |||| | ||| |||
Sbjct: 2 ttggatgatatttatgattcttatgcaactccagaagaatgtgaattacttaataagtgc 61
Query: 499 atcgaaagctgggatcccaaaggggctcaagacctcccaggttgcatgaaatttgctcta 558
|| ||||||||||| | || |||||||| || ||||| | ||||||||||||||| |
Sbjct: 62 attcaaagctgggattcaaagggggctcatgagctccctgagtgcatgaaatttgctttg 121
Query: 559 gagaagatattggatagctaccagaccattacaaatatgctccacc 604
||||| ||||||||||||||| | |||||| ||||||||| ||||
Sbjct: 122 gagaaaatattggatagctacgaaaccattgaaaatatgcttcacc 167
>gb|CN148869.1|CN148869 WOUND1_59_G08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_59_G08_A002 3', mRNA sequence
Length = 800
Score = 87.7 bits (44), Expect = 1e-015
Identities = 110/132 (83%)
Strand = Plus / Plus
Query: 473 aagaatgtgaaatactcactaattgcatcgaaagctgggatcccaaaggggctcaagacc 532
||||||||||| |||| | ||| ||||| ||||||||||| | || |||||||| || |
Sbjct: 12 aagaatgtgaattacttaataagtgcattcaaagctgggattcaaagggggctcatgagc 71
Query: 533 tcccaggttgcatgaaatttgctctagagaagatattggatagctaccagaccattacaa 592
|||| | ||||||||||||||| | ||||| ||||||||||||||| | |||||| ||
Sbjct: 72 tccctgagtgcatgaaatttgctttggagaaaatattggatagctacgaaaccattgaaa 131
Query: 593 atatgctccacc 604
||||||| ||||
Sbjct: 132 atatgcttcacc 143
>gb|BZ422372.1|BZ422372 id52h06.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id52h06 5', DNA sequence
Length = 678
Score = 71.9 bits (36), Expect = 7e-011
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 505 agctgggatcccaaaggggctcaagacctcccaggttgcatgaaatttgctctagagaag 564
||||||||| | || |||||||| || ||||| | ||||||||||||||| | |||||
Sbjct: 607 agctgggattcaaagggggctcatgagctccctgagtgcatgaaatttgctttggagaaa 548
Query: 565 atattggatagctaccagaccattacaaatatgctccacc 604
||||||||||||||| | |||||| ||||||||| ||||
Sbjct: 547 atattggatagctacgaaaccattgaaaatatgcttcacc 508
>gb|BZ423750.1|BZ423750 id52h06.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id52h06 5', DNA sequence
Length = 744
Score = 71.9 bits (36), Expect = 7e-011
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 505 agctgggatcccaaaggggctcaagacctcccaggttgcatgaaatttgctctagagaag 564
||||||||| | || |||||||| || ||||| | ||||||||||||||| | |||||
Sbjct: 373 agctgggattcaaagggggctcatgagctccctgagtgcatgaaatttgctttggagaaa 432
Query: 565 atattggatagctaccagaccattacaaatatgctccacc 604
||||||||||||||| | |||||| ||||||||| ||||
Sbjct: 433 atattggatagctacgaaaccattgaaaatatgcttcacc 472
>gb|CB926745.1|CB926745 ABA1_10_F12.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_10_F12_A012 3', mRNA sequence
Length = 728
Score = 61.9 bits (31), Expect = 6e-008
Identities = 106/131 (80%)
Strand = Plus / Plus
Query: 474 agaatgtgaaatactcactaattgcatcgaaagctgggatcccaaaggggctcaagacct 533
|||||||||| || | || || ||||| |||||||||||| | | | |||||| |||||
Sbjct: 1 agaatgtgaattatttaccaagtgcatggaaagctgggattcaatggaggctcatgacct 60
Query: 534 cccaggttgcatgaaatttgctctagagaagatattggatagctaccagaccattacaaa 593
|||| ||||||||||||| | ||||||| ||||| || ||||| ||||||| |||
Sbjct: 61 tccagagtgcatgaaatttggtttagagaaaatattcgacagctatgggaccattgaaaa 120
Query: 594 tatgctccacc 604
|||||||||||
Sbjct: 121 tatgctccacc 131
>gb|CB926721.1|CB926721 ABA1_10_F10.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_10_F10_A012 3', mRNA sequence
Length = 662
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 541 tgcatgaaatttgctctagagaagatattggatagctaccagaccattacaaatatgctc 600
||||||||||||| | ||||||| ||||| || ||||| ||||||| ||||||||||
Sbjct: 2 tgcatgaaatttggtttagagaaaatattcgacagctatgggaccattgaaaatatgctc 61
Query: 601 cacc 604
||||
Sbjct: 62 cacc 65
>gb|CN149964.1|CN149964 WOUND1_66_B10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_B10_A002 3', mRNA sequence
Length = 726
Score = 48.1 bits (24), Expect = 0.001
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 541 tgcatgaaatttgctctagagaagatattggatagctaccagaccattacaaatatgctc 600
||||||||||||||| | ||||||||||| ||||| || | |||||| |||||||||
Sbjct: 8 tgcatgaaatttgctttggagaagatattcgatagttatgaaaccattgaaaatatgctt 67
Query: 601 cacc 604
||||
Sbjct: 68 cacc 71
>gb|BI098100.1|BI098100 IP1_32_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.059
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243 cgttctgcagctccatcatca 263
|||||||||||||||||||||
Sbjct: 176 cgttctgcagctccatcatca 196
>gb|CW434838.1|CW434838 fsbb001f150l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150l16, DNA
sequence
Length = 764
Score = 38.2 bits (19), Expect = 0.92
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 10 aggacccatggggagacaatactcgatgaagccat 44
||||| |||||||||| | |||| |||||||||||
Sbjct: 592 aggactcatggggagaaagtacttgatgaagccat 558
>gb|CW435026.1|CW435026 fsbb001f150p20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150p20, DNA
sequence
Length = 642
Score = 38.2 bits (19), Expect = 0.92
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 10 aggacccatggggagacaatactcgatgaagccat 44
||||| |||||||||| | |||| |||||||||||
Sbjct: 592 aggactcatggggagaaagtacttgatgaagccat 558
>gb|CW435030.1|CW435030 fsbb001f150p22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150p22, DNA
sequence
Length = 765
Score = 38.2 bits (19), Expect = 0.92
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 10 aggacccatggggagacaatactcgatgaagccat 44
||||| |||||||||| | |||| |||||||||||
Sbjct: 592 aggactcatggggagaaagtacttgatgaagccat 558
>gb|CX609350.1|CX609350 ANR1_12_D11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_12_D11_A002 3', mRNA sequence
Length = 777
Score = 38.2 bits (19), Expect = 0.92
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 244 gttctgcagctccatcatcagca 266
||||| |||||||||||||||||
Sbjct: 202 gttctccagctccatcatcagca 180
>gb|CX614440.1|CX614440 GABR1_14_C06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_14_C06_A002 3', mRNA sequence
Length = 727
Score = 38.2 bits (19), Expect = 0.92
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 244 gttctgcagctccatcatcagca 266
||||| |||||||||||||||||
Sbjct: 157 gttctccagctccatcatcagca 135
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence
Length = 183990
Score = 38.2 bits (19), Expect = 0.92
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 552 tgctctagagaagatattg 570
|||||||||||||||||||
Sbjct: 99709 tgctctagagaagatattg 99691
>gb|CW269113.1|CW269113 104_740_11401686_116_35319_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401686, DNA
sequence
Length = 694
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 246 tctgcagctccatcatca 263
||||||||||||||||||
Sbjct: 544 tctgcagctccatcatca 527
>gb|CW269114.1|CW269114 104_740_11401686_148_35315_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401686, DNA
sequence
Length = 657
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 246 tctgcagctccatcatca 263
||||||||||||||||||
Sbjct: 504 tctgcagctccatcatca 521
>gb|CW272260.1|CW272260 104_744_11403356_116_36228_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403356, DNA
sequence
Length = 768
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 246 tctgcagctccatcatca 263
||||||||||||||||||
Sbjct: 728 tctgcagctccatcatca 745
>gb|CW386139.1|CW386139 fsbb001f069o08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069o08, DNA
sequence
Length = 553
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 512 atcccaaaggggctcaag 529
||||||||||||||||||
Sbjct: 547 atcccaaaggggctcaag 530
>gb|CN148951.1|CN148951 WOUND1_59_G08.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_59_G08_A002 5', mRNA sequence
Length = 872
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 160 gagtcaaagtattacatc 177
||||||||||||||||||
Sbjct: 824 gagtcaaagtattacatc 841
>gb|CN149300.1|CN149300 WOUND1_61_H11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_H11_A002 5', mRNA sequence
Length = 879
Score = 36.2 bits (18), Expect = 3.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 160 gagtcaaagtattacatc 177
||||||||||||||||||
Sbjct: 811 gagtcaaagtattacatc 828
Database: Sorghum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:37 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,486
Number of Sequences: 832831
Number of extensions: 127486
Number of successful extensions: 35327
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35286
Number of HSP's gapped (non-prelim): 40
length of query: 612
length of database: 491,359,669
effective HSP length: 19
effective length of query: 593
effective length of database: 475,535,880
effective search space: 281992776840
effective search space used: 281992776840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)