BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN11a10.yg.3.1
(1341 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126562.1|CN126562 RHOH1_17_H08.g1_A002 Acid- and alkal... 813 0.0
gb|CX611486.1|CX611486 ANR1_25_A03.b1_A002 Anaerobic roots ... 741 0.0
gb|CD429864.1|CD429864 ETH1_16_F12.b1_A002 Ethylene-treated... 704 0.0
gb|CN137455.1|CN137455 OX1_57_H09.b1_A002 Oxidatively-stres... 684 0.0
gb|BG465451.1|BG465451 EM1_76_F10.g1_A002 Embryo 1 (EM1) So... 593 e-167
gb|CN126476.1|CN126476 RHOH1_17_H08.b1_A002 Acid- and alkal... 591 e-167
gb|BE596044.1|BE596044 PI1_51_F09.g1_A002 Pathogen induced ... 567 e-159
gb|CN137532.1|CN137532 OX1_57_H09.g1_A002 Oxidatively-stres... 456 e-126
gb|CN130821.1|CN130821 RHOH1_44_B02.b1_A002 Acid- and alkal... 448 e-124
gb|CD429980.1|CD429980 ETH1_16_F12.g1_A002 Ethylene-treated... 442 e-122
gb|CX611569.1|CX611569 ANR1_25_A03.g1_A002 Anaerobic roots ... 434 e-120
gb|BG357495.1|BG357495 OV2_30_F05.g1_A002 Ovary 2 (OV2) Sor... 398 e-109
gb|CX617727.1|CX617727 GABR1_35_A05.g1_A002 GA- or brassino... 387 e-105
gb|AW671405.1|AW671405 LG1_342_H12.b1_A002 Light Grown 1 (L... 383 e-104
gb|BG054054.1|BG054054 OV2_1_G12.g1_A002 Ovary 2 (OV2) Sorg... 371 e-100
gb|CD205942.1|CD205942 HS1_19_D01.g1_A012 Heat-shocked seed... 337 2e-090
gb|BI074594.1|BI074594 IP1_13_F05.b1_A002 Immature pannicle... 329 4e-088
gb|CD210471.1|CD210471 HS1_51_A02.g1_A012 Heat-shocked seed... 321 9e-086
gb|BG817495.1|BG817495 EM1_76_F10.b1_A002 Embryo 1 (EM1) So... 256 5e-066
gb|CX621852.1|CX621852 GABR1_60_C08.g1_A002 GA- or brassino... 256 5e-066
gb|CD205917.1|CD205917 HS1_19_D01.b1_A012 Heat-shocked seed... 252 7e-065
gb|BG948582.1|BG948582 IP1_11_D11.b1_A002 Immature pannicle... 250 3e-064
gb|BG948269.1|BG948269 IP1_11_D11.g1_A002 Immature pannicle... 248 1e-063
gb|BE596271.1|BE596271 PI1_51_F09.b1_A002 Pathogen induced ... 230 3e-058
gb|BI351530.1|BI351530 IP1_72_A07.b1_A002 Immature pannicle... 230 3e-058
gb|BI351463.1|BI351463 IP1_72_A07.g1_A002 Immature pannicle... 222 7e-056
gb|CW051026.1|CW051026 104_291_10515005_114_30192 Sorghum m... 220 3e-055
gb|CD207091.1|CD207091 HS1_27_B10.b1_A012 Heat-shocked seed... 186 4e-045
gb|BG159427.1|BG159427 OV2_7_G06.g1_A002 Ovary 2 (OV2) Sorg... 151 2e-034
gb|CW341607.1|CW341607 104_843_11486424_116_36160_094 Sorgh... 103 4e-020
gb|CW264592.1|CW264592 104_733_11231388_116_35254_040 Sorgh... 96 1e-017
gb|CW341608.1|CW341608 104_843_11486424_148_36159_094 Sorgh... 96 1e-017
gb|CW035999.1|CW035999 104_267_10503499_115_30375 Sorghum m... 70 6e-010
gb|CW035998.1|CW035998 104_267_10503499_114_30374 Sorghum m... 64 4e-008
gb|CW264593.1|CW264593 104_733_11231388_148_35250_040 Sorgh... 64 4e-008
gb|BE355859.1|BE355859 DG1_11_C11.b1_A002 Dark Grown 1 (DG1... 64 4e-008
gb|CW482095.1|CW482095 fsbb001f242a04k0 Sorghum methylation... 60 6e-007
gb|BI074279.1|BI074279 IP1_13_F05.g1_A002 Immature pannicle... 60 6e-007
gb|CW023116.1|CW023116 104_162_10432256_5_30000 Sorghum met... 52 1e-004
gb|CW050339.1|CW050339 104_290_10514603_114_30195 Sorghum m... 52 1e-004
gb|CW064465.1|CW064465 104_310_10522586_114_30142 Sorghum m... 52 1e-004
gb|CW064466.1|CW064466 104_310_10522586_115_30146 Sorghum m... 52 1e-004
gb|CW147966.1|CW147966 104_542_11140168_116_35003_058 Sorgh... 52 1e-004
gb|CW181890.1|CW181890 104_597_11163759_116_36655_062 Sorgh... 52 1e-004
gb|CW260187.1|CW260187 104_726_11228830_148_35189_083 Sorgh... 52 1e-004
gb|CW366402.1|CW366402 fsbb001f039g08f0 Sorghum methylation... 52 1e-004
gb|CW463034.1|CW463034 fsbb001f211h04f0 Sorghum methylation... 52 1e-004
gb|BE600676.1|BE600676 PI1_91_C09.b1_A002 Pathogen induced ... 52 1e-004
gb|BG487558.1|BG487558 EM1_67_E07.b1_A002 Embryo 1 (EM1) So... 52 1e-004
gb|CW096526.1|CW096526 104_462_11001943_116_34348_028 Sorgh... 48 0.002
gb|CW336772.1|CW336772 104_836_11483778_116_36111_075 Sorgh... 48 0.002
gb|CD226474.1|CD226474 CCC1_46_A10.b1_A007 Callus culture/c... 48 0.002
gb|CW085440.1|CW085440 104_428_10946388_116_32564_036 Sorgh... 44 0.033
gb|CW429372.1|CW429372 fsbb001f142j11f0 Sorghum methylation... 44 0.033
>gb|CN126562.1|CN126562 RHOH1_17_H08.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_17_H08_A002 5', mRNA sequence
Length = 791
Score = 813 bits (410), Expect = 0.0
Identities = 688/777 (88%), Gaps = 8/777 (1%)
Strand = Plus / Plus
Query: 380 atggagaggtatacgaagatgagcaacgctatgaagacgtatgggaagggcatcttcttc 439
|||||||| ||||| || |||||||| |||||||| || ||||| ||| ||||||||||
Sbjct: 1 atggagagatatactaaaatgagcaatgctatgaaaacctatggaaagaacatcttcttc 60
Query: 440 tcgctgtgcgaatgggggaggcaaaaccctgctacctgggcaggcggcatggggaacagc 499
||| |||| |||||||| || |||| |||||||||||||||||| ||||||| ||||||
Sbjct: 61 tcgttgtgtgaatggggaagagaaaatcctgctacctgggcaggcagcatgggaaacagc 120
Query: 500 tggagaacgaccgatgatatcgccgacaactggggcagcatgacgtctcgtgcagaccag 559
|||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 121 tggagaacaactgatgatatcgctgacaactggggcagcatgacatctcgtgcagaccag 180
Query: 560 aacgacaggtgggcttcctacgccggacctggcgggtggaacgatcctgacatgcttgag 619
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 181 aatgacagatgggcttcctatgccggacctggtgggtggaacgatcctgatatgcttgaa 240
Query: 620 gtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgggcgctc 679
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 gtgggcaacggtggtatgtctgaggcggagtaccgctctcacttcagcatctgggcactt 300
Query: 680 gccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggc 739
||||||||||| ||||||||||| |||||||| || |||||||||||||||| | || |
Sbjct: 301 gccaaggctccccttctgatcggatgcgacgtacggtcgatgagccagcagacaaaggac 360
Query: 740 atactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaag 799
|||||||||||||| ||||||||||| |||||||||||||| || || || || ||||||
Sbjct: 361 atactcagcaactcagaagtcatcgctgtgaaccaagatagtcttggtgtccaaggaaag 420
Query: 800 aaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaag 859
|||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 aaagtgcaatccaacaatggcttggaggtttgggctgggccactcagcaacaacaggaag 480
Query: 860 gccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagc 919
|||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct: 481 gccgtggtgctctggaaccggcagggctaccaggcaaccatcaccgcacaatggtcgagc 540
Query: 920 atcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattc 979
|||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 541 atcgggcttgcttcatccactgctgtcactgctcgtgatctatgggcgcactcatcattc 600
Query: 980 tcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttg 1039
|||||||| ||||| |||||||||| ||| ||||||| |||||||||||||||||| ||
Sbjct: 601 tcggctcagggccaattatcagcttcagtggcacctcatgactgcaagatgtatgtcctg 660
Query: 1040 acgccgaactaact--cagaagacaagagcggattgttccatggcgcgtgggatgcaacc 1097
|| || || ||||| |||||||| ||||||| ||||| | |||||||||||||
Sbjct: 661 acaccaaattaacttatagaagacatgagcgga---gtccat--agtgtgggatgcaacc 715
Query: 1098 attcggtcaggattcagggaagaagagtatgcaggcaaggatttcaagagaaggaaa 1154
||||| ||| |||||| ||| | ||||||||||||||||||| |||| |||||||
Sbjct: 716 attcgatcaagattca-ngaaaatgagtatgcaggcaaggattctaagataaggaaa 771
>gb|CX611486.1|CX611486 ANR1_25_A03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_A03_A002 3', mRNA sequence
Length = 799
Score = 741 bits (374), Expect = 0.0
Identities = 605/678 (89%), Gaps = 8/678 (1%)
Strand = Plus / Plus
Query: 479 gcaggcggcatggggaacagctggagaacgaccgatgatatcgccgacaactggggcagc 538
|||||| ||||||| |||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 1 gcaggcagcatgggaaacagctggagaacaactgatgatatcgctgacaactggggcagc 60
Query: 539 atgacgtctcgtgcagaccagaacgacaggtgggcttcctacgccggacctggcgggtgg 598
||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 61 atgacatctcgtgcagaccagaatgacagatgggcttcctatgccggacctggtgggtgg 120
Query: 599 aacgatcctgacatgcttgaggtgggcaacggcggcatgtccgaggcggagtaccgctct 658
||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct: 121 aacgatcctgatatgcttgaagtgggcaacggtggtatgtctgaggcggagtaccgctct 180
Query: 659 cacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcg 718
||||||||||||||||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 181 cacttcagcatctgggcacttgccaaggctcctcttctgatcggatgcgacgtacggtcg 240
Query: 719 atgagccagcagacgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagat 778
|||||||||||||| | || ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 241 atgagccagcagacaaaggacatactcagcaactcagaagtcatcgctgtgaaccaagat 300
Query: 779 agcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttgggctggg 838
|| || || || || |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 301 agtcttggtgtccaaggaaagaaagtgcaatccaacaatggcttggaggtttgggctggg 360
Query: 839 ccgctcagcaacaacaggaaggccgtggttctctggaaccggcagggataccaggcaacc 898
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 361 ccactcagcaacaacaggaaggccgtggtgctctggaaccggcagggctaccaggcaacc 420
Query: 899 atcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgat 958
|||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 421 atcaccgcacaatggtcgagcatcgggcttgcttcatccactgctgtcactgctcgtgat 480
Query: 959 ctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtgccacctcac 1018
|||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||
Sbjct: 481 ctatgggcgcactcatcattctcggctcagggccaattatcagcttcagtggcacctcat 540
Query: 1019 gactgcaagatgtatgtcttgacgccgaactaact--cagaagacaagagcggattgttc 1076
|||||||||||||||||| |||| || || ||||| |||||||| ||||||| ||
Sbjct: 541 gactgcaagatgtatgtcctgacaccaaattaacttatagaagacatgagcgga---gtc 597
Query: 1077 catggcgcgtgggatgcaaccattcggtcaggattcagggaagaagagtatgcaggcaag 1136
||| | |||||||||||||||||| ||| |||||| |||| | |||||||||||||||
Sbjct: 598 cat--agtgtgggatgcaaccattcgatcaagattca-ggaaaatgagtatgcaggcaag 654
Query: 1137 gatttcaagagaaggaaa 1154
|||| |||| |||||||
Sbjct: 655 gattctaagataaggaaa 672
Score = 67.9 bits (34), Expect = 2e-009
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 716 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 773
Query: 1280 agttgcagcaataaaattggct 1301
||||||||||||||||||||||
Sbjct: 774 agttgcagcaataaaattggct 795
>gb|CD429864.1|CD429864 ETH1_16_F12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_F12_A002 3', mRNA sequence
Length = 775
Score = 704 bits (355), Expect = 0.0
Identities = 584/655 (89%), Gaps = 9/655 (1%)
Strand = Plus / Plus
Query: 502 gagaacgaccgatgatatcgccgacaactggggcagcatgacgtctcgtgcagaccagaa 561
|||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gagaacaactgatgatatcgctgacaactggggcagcatgacatctcgtgcagaccagaa 60
Query: 562 cgacaggtgggcttcctacgccggacctggcgggtggaacgatcctgacatgcttgaggt 621
||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 61 tgacagatgggcttcctatgccggacctggtgggtggaacgatcctgatatgcttgaagt 120
Query: 622 gggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgc 681
||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct: 121 gggcaacggtggtatgtctgaggcggagtaccgctctcacttcagcatctgggcacttgc 180
Query: 682 caaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcat 741
||||||||| ||||||||||| |||||||| || |||||||||||||||| | || |||
Sbjct: 181 caaggctcctcttctgatcggatgcgacgtacggtcgatgagccagcagacaaaggacat 240
Query: 742 actcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaa 801
|||||||||||| ||||||||||| |||||||||||||| || || || || ||||||||
Sbjct: 241 actcagcaactcagaagtcatcgctgtgaaccaagatagtctcggtgtccaaggaaagaa 300
Query: 802 agtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaacaggaaggc 861
|||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 agtgcaatccaacaatggcttggaggtttgggctgggccactcagcaacaacaggaaggc 360
Query: 862 cgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagcat 921
|||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 361 cgtggtgctctggaaccggcagggctaccaggcaaccatcaccgcacaatggtcgagcat 420
Query: 922 cgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattctc 981
|||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 421 cgggcttgcttcatccactgctgtcactgctcgtgatctatgggcgcactcatcattctc 480
Query: 982 ggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttgac 1041
|||||| ||||| |||||||||| ||| ||||||| |||||||||||||||||| ||||
Sbjct: 481 ggctcagggcca-atatcagcttcagtggcacctcatgactgcaagatgtatgtcctgac 539
Query: 1042 gccgaactaact--cagaagacaagagcggattgttccatggcgcgtgggatgcaaccat 1099
|| || ||||| |||||||| ||||||| ||||| | |||||||||||||||
Sbjct: 540 accaaattaacttatagaagacatgagcgga---gtccat--agtgtgggatgcaaccat 594
Query: 1100 tcggtcaggattcagggaagaagagtatgcaggcaaggatttcaagagaaggaaa 1154
||| ||| |||||| |||| | ||||||||||||||||||| |||| |||||||
Sbjct: 595 tcgatcaagattca-ggaaaatgagtatgcaggcaaggattctaagataaggaaa 648
Score = 69.9 bits (35), Expect = 6e-010
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 692 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 749
Query: 1280 agttgcagcaataaaattggctt 1302
|||||||||||||||||||||||
Sbjct: 750 agttgcagcaataaaattggctt 772
>gb|CN137455.1|CN137455 OX1_57_H09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H09_A002 3', mRNA sequence
Length = 762
Score = 684 bits (345), Expect = 0.0
Identities = 573/645 (88%), Gaps = 8/645 (1%)
Strand = Plus / Plus
Query: 512 gatgatatcgccgacaactggggcagcatgacgtctcgtgcagaccagaacgacaggtgg 571
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 2 gatgatatcgctgacaactggggcagcatgacatctcgtgcagaccagaatgacagatgg 61
Query: 572 gcttcctacgccggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggc 631
||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 62 gcttcttatgccggacctggtgggtggaacgatcctgatatgcttgaagtgggcaacggt 121
Query: 632 ggcatgtccgaggcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccg 691
|| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 122 ggtatgtctgaggcggagtaccgctctcacttcagcatctgggcacttgccaaggctcct 181
Query: 692 cttctgatcgggtgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaac 751
||||||||||| |||||||| || |||||||||||||||| | || |||| ||||||||
Sbjct: 182 cttctgatcggatgcgacgtacggtcgatgagccagcagacaaaggacatattcagcaac 241
Query: 752 tcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtcc 811
|| ||||||||||| |||||||||||||| || || || || |||||||||||||| |||
Sbjct: 242 tcagaagtcatcgctgtgaaccaagatagtcttggtgtccaaggaaagaaagtgcaatcc 301
Query: 812 agcaatggcttggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctc 871
| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct: 302 accaatggcttggaggtttgggttgggccactcagcaacaacaggaaggccgtggtgctc 361
Query: 872 tggaaccggcagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctccct 931
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 362 tggaaccggcagggctaccaggcaaccatcaccgcacaatggtcgagcatcgggcttgct 421
Query: 932 tcttccactgctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggc 991
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 422 tcatccactgctgtcactgctcgtgatctatgggcgcactcatcattctcggctcagggc 481
Query: 992 cagctatcagcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaa 1051
|| |||||||||| ||| ||||||| |||||||||||||||||| |||| || || |||
Sbjct: 482 caattatcagcttcagtggcacctcatgactgcaagatgtatgtcctgacaccaaattaa 541
Query: 1052 ct--cagaagacaagagcggattgttccatggcgcgtgggatgcaaccattcggtcagga 1109
|| |||||||| ||||||| ||||| | |||||||||||||||||| ||| ||
Sbjct: 542 cttatagaagacatgagcgga---gtccat--agtgtgggatgcaaccattcgatcaaga 596
Query: 1110 ttcagggaagaagagtatgcaggcaaggatttcaagagaaggaaa 1154
|||| |||| | ||||||||||||||||||| |||| |||||||
Sbjct: 597 ttca-ggaaaatgagtatgcaggcaaggattctaagataaggaaa 640
Score = 65.9 bits (33), Expect = 9e-009
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 684 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 741
Query: 1280 agttgcagcaataaaattggc 1300
|||||||||||||||||||||
Sbjct: 742 agttgcagcaataaaattggc 762
>gb|BG465451.1|BG465451 EM1_76_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 636
Score = 593 bits (299), Expect = e-167
Identities = 500/563 (88%), Gaps = 8/563 (1%)
Strand = Plus / Plus
Query: 594 ggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccgaggcggagtacc 653
|||||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||||
Sbjct: 1 ggtggaacgatcctgatatgcttgaagtgggcaacggtggtatgtctgaggcggagtacc 60
Query: 654 gctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgc 713
|||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
Sbjct: 61 gctctcacttcagcatctgggcacttgccaaggctcctcttctgatcggatgcgacgtac 120
Query: 714 gcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatcgccgtgaacc 773
| |||||||||||||||| | || ||||||||||||||| ||||||||||| |||||||
Sbjct: 121 ggtcgatgagccagcagacaaaggacatactcagcaactcagaagtcatcgctgtgaacc 180
Query: 774 aagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggaggtttggg 833
||||||| || || || || |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 181 aagatagtcttggtgtccaaggaaagaaagtgcaatccaacaatggcttggaggtttggg 240
Query: 834 ctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcagggataccagg 893
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 241 ctgggccactcagcaacaacaggaaggccgtggtgctctggaaccggcagggctaccagg 300
Query: 894 caaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtcactgctc 953
||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 301 caaccatcaccgcacaatggtcgagcatcgggcttgcttcatccactgctgtcactgctc 360
Query: 954 gtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagcttcggtgccac 1013
||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||
Sbjct: 361 gtgatctatgggcgcactcatcattctcggctcagggccaattatcagcttcagtggcac 420
Query: 1014 ctcacgactgcaagatgtatgtcttgacgccgaactaact--cagaagacaagagcggat 1071
|||| |||||||||||||||||| |||| || || ||||| |||||||| |||||||
Sbjct: 421 ctcatgactgcaagatgtatgtcctgacaccaaattaacttatagaagacatgagcgga- 479
Query: 1072 tgttccatggcgcgtgggatgcaaccattcggtcaggattcagggaagaagagtatgcag 1131
||||| | |||||||||||||||||| ||| |||||| |||| | ||||||||||
Sbjct: 480 --gtccat--agtgtgggatgcaaccattcgatcaagattca-ggaaaatgagtatgcag 534
Query: 1132 gcaaggatttcaagagaaggaaa 1154
||||||||| |||| |||||||
Sbjct: 535 gcaaggattctaagataaggaaa 557
>gb|CN126476.1|CN126476 RHOH1_17_H08.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_17_H08_A002 3', mRNA sequence
Length = 771
Score = 591 bits (298), Expect = e-167
Identities = 508/574 (88%), Gaps = 8/574 (1%)
Strand = Plus / Plus
Query: 583 cggacctggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatgtccga 642
||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| ||
Sbjct: 1 cggacctggtgggtggaacgatcctgatatgcttgaagtgggcaacggtggtatgtctga 60
Query: 643 ggcggagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgg 702
||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 61 ggcggagtaccgctctcacttcagcatttgggcacttgccaaggctccccttctgatcgg 120
Query: 703 gtgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcat 762
|||||||| || |||||||||||||||| | || ||||||||||||||| ||||||||
Sbjct: 121 atgcgacgtacggtcgatgagccagcagacaaaggacatactcagcaactcagaagtcat 180
Query: 763 cgccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggctt 822
||| |||||||||||||| || || || || |||||||||||||| |||| |||||||||
Sbjct: 181 cgctgtgaaccaagatagtcttggtgtccaaggaaagaaagtgcaatccaacaatggctt 240
Query: 823 ggaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggca 882
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 ggaggtttgggctgggccactcagcaacaacaggaaggccgtggtgctctggaaccggca 300
Query: 883 gggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgc 942
||| |||||||||||||||||||| || ||||||||||||||||| |||| ||||||||
Sbjct: 301 ggggtaccaggcaaccatcaccgcacaatggtcgagcatcgggcttgcttcatccactgc 360
Query: 943 tgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatcagc 1002
|||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct: 361 tgtcactgctcgtgatctatgggcgcactcatcattttcggctcagggccaattatcagc 420
Query: 1003 ttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact--cagaaga 1060
||| ||| ||||||| |||||||||||||||||| |||| || || ||||| ||||||
Sbjct: 421 ttcagtggcacctcatgactgcaagatgtatgtcctgacaccaaattaacttatagaaga 480
Query: 1061 caagagcggattgttccatggcgcgtgggatgcaaccattcggtcaggattcagggaaga 1120
|| ||||||| ||||| | |||||||||||||||||| ||| |||||| |||| |
Sbjct: 481 catgagcgga---gtccat--agtgtgggatgcaaccattcgatcaagattca-ggaaaa 534
Query: 1121 agagtatgcaggcaaggatttcaagagaaggaaa 1154
||||||||||||||||||| |||| |||||||
Sbjct: 535 tgagtatgcaggcaaggattctaagataaggaaa 568
Score = 83.8 bits (42), Expect = 4e-014
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 612 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 669
Query: 1280 agttgcagcaataaaattggcttgcccacc 1309
||||||||||||||||||||||||||||||
Sbjct: 670 agttgcagcaataaaattggcttgcccacc 699
>gb|BE596044.1|BE596044 PI1_51_F09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 649
Score = 567 bits (286), Expect = e-159
Identities = 484/546 (88%), Gaps = 8/546 (1%)
Strand = Plus / Plus
Query: 611 atgcttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatc 670
|||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 5 atgcttgaagtgggcaacggtggtatgtctgaggcggagtaccgctctcacttcagcatc 64
Query: 671 tgggcgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcag 730
||||| || ||||||||||| ||||||||||| |||||||| || ||||||||||||||
Sbjct: 65 tgggcacttgccaaggctcctcttctgatcggatgcgacgtacggtcgatgagccagcag 124
Query: 731 acgatgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtg 790
|| | || ||||||||||||||| ||||||||||| |||||||||||||| || || ||
Sbjct: 125 acaaaggacatactcagcaactcagaagtcatcgctgtgaaccaagatagtcttggtgtc 184
Query: 791 cagggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaac 850
|| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 185 caaggaaagaaagtgcaatccaacaatggcttggaggtttgggctgggccactcagcaac 244
Query: 851 aacaggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcag 910
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 245 aacaggaaggccgtggtgctctggaaccggcagggctaccaggcaaccatcaccgcacaa 304
Query: 911 tggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcac 970
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggtcgagcatcgggcttgcttcatccactgctgtcactgctcgtgatctatgggcgcac 364
Query: 971 tcgtcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatg 1030
|| |||||||||||||| ||||| |||||||||| ||| ||||||| ||||||||||||
Sbjct: 365 tcatcattctcggctcagggccaattatcagcttcagtggcacctcatgactgcaagatg 424
Query: 1031 tatgtcttgacgccgaactaact--cagaagacaagagcggattgttccatggcgcgtgg 1088
|||||| |||| || || ||||| |||||||| ||||||| ||||| | ||||
Sbjct: 425 tatgtcctgacaccaaattaacttatagaagacatgagcgga---gtccat--agtgtgg 479
Query: 1089 gatgcaaccattcggtcaggattcagggaagaagagtatgcaggcaaggatttcaagaga 1148
|||||||||||||| ||| |||||| |||| | ||||||||||||||||||| |||| |
Sbjct: 480 gatgcaaccattcgatcaagattca-ggaaaatgagtatgcaggcaaggattctaagata 538
Query: 1149 aggaaa 1154
||||||
Sbjct: 539 aggaaa 544
Score = 44.1 bits (22), Expect = 0.033
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgt 1257
|||||||||||||| |||||| ||||| ||||||||||
Sbjct: 588 aagtgtatctaaggagccgtc-aaatgtcggtgcctgt 624
>gb|CN137532.1|CN137532 OX1_57_H09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H09_A002 5', mRNA sequence
Length = 758
Score = 456 bits (230), Expect = e-126
Identities = 389/442 (88%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 315 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 374
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 375 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 434
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||| ||||||
Sbjct: 435 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccc 494
Query: 181 ctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatcta 240
|||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||
Sbjct: 495 ttctggcatcaaggcactcgcagattatgtgcacgcaaaagggctgaagcttggcatcta 554
Query: 241 cagcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgagga 300
||| |||||||||||||| || |||||||| ||||||||||| |||||||| || || ||
Sbjct: 555 cagtgatgctgggacacgaacatgcagccaaaaaatgccaggatcacttgatcatgaaga 614
Query: 301 gcaggacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaa 360
|||||| ||||| ||||| || || |||||||| |||||||||||||| |||||||||||
Sbjct: 615 gcaggatgtgaaaacattttcatcttggggtattgattatctgaaatatgacaactgcaa 674
Query: 361 cgacgccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgta 420
|| || |||||||| || |||||||| ||||| || |||||||| |||||||| || ||
Sbjct: 675 tgatgctggcaggagtgtaatggagagatatactaaaatgagcaatgctatgaaaaccta 734
Query: 421 tgggaagggcatcttcttctcg 442
||| ||| |||||||||||||
Sbjct: 735 tggaaagaacatcttcttctcg 756
>gb|CN130821.1|CN130821 RHOH1_44_B02.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_44_B02_A002 3', mRNA sequence
Length = 630
Score = 448 bits (226), Expect = e-124
Identities = 466/542 (85%), Gaps = 8/542 (1%)
Strand = Plus / Plus
Query: 615 ttgaggtgggcaacggcggcatgtccgaggcggagtaccgctctcacttcagcatctggg 674
|||| ||||||||||| || || || |||||||||||||||||||| |||||||| ||||
Sbjct: 1 ttgaagtgggcaacggtggtatttctgaggcggagtaccgctctcatttcagcatttggg 60
Query: 675 cgctcgccaaggctccgcttctgatcgggtgcgacgtgcgcgcgatgagccagcagacga 734
| || |||||||||| ||||| ||||| |||||||| || || ||| ||||||||| |
Sbjct: 61 cacttgccaaggctcttcttctaatcggatgcgacgtacggtcgttgacccagcagacaa 120
Query: 735 tgggcatactcagcaactcggaagtcatcgccgtgaaccaagatagcctaggcgtgcagg 794
|| ||||||||||||||| ||||||||||| |||||||||||||| || || || || |
Sbjct: 121 aggacatactcagcaactcagaagtcatcgctgtgaaccaagatagtcttggtgtccaag 180
Query: 795 gaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaaca 854
|||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 gaaagagggtgcaatccaacaatggcttggaggtttgggctgggccactcagcaacaaca 240
Query: 855 ggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtggt 914
||||| ||||||| ||||||||||||||||| ||||||||| |||||||||| || ||||
Sbjct: 241 ggaagcccgtggtgctctggaaccggcagggttaccaggcacccatcaccgcacaatggt 300
Query: 915 cgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcgt 974
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 cgagcatcgggcttgcttcatccactgctgtcactgctcgtgatctatgggcgcactcat 360
Query: 975 cattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtatg 1034
|||| |||||||| ||||| |||||| ||| ||| | ||||| ||||||||||||||||
Sbjct: 361 cattttcggctcagggccaattatcagtttcagtggcccctcatgactgcaagatgtatg 420
Query: 1035 tcttgacgccgaactaact--cagaagacaagagcggattgttccatggcgcgtgggatg 1092
|| |||| || || ||||| ||||||||| ||||||| ||||| | ||||||||
Sbjct: 421 tcctgaccccaaattaacttacagaagacatgagcgga---gtccat--agtgtgggatg 475
Query: 1093 caaccattcggtcaggattcagggaagaagagtatgcaggcaaggatttcaagagaagga 1152
|| ||||||| ||| |||||| |||| | ||||||||||||||||||| |||| |||||
Sbjct: 476 cacccattcgatcaagattca-ggaaaatgagtatgcaggcaaggattctaagataagga 534
Query: 1153 aa 1154
||
Sbjct: 535 aa 536
>gb|CD429980.1|CD429980 ETH1_16_F12.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_F12_A002 5', mRNA sequence
Length = 753
Score = 442 bits (223), Expect = e-122
Identities = 373/423 (88%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 381
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 382 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 441
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||| ||||||
Sbjct: 442 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccc 501
Query: 181 ctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatcta 240
|||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||
Sbjct: 502 ttctggcatcaaggcactcgcagattatgtgcacgcaaaagggctgaagcttggcatcta 561
Query: 241 cagcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgagga 300
||| |||||||||||||| || |||||||| ||||||||||| |||||||| || || ||
Sbjct: 562 cagtgatgctgggacacgaacatgcagccaaaaaatgccaggatcacttgatcatgaaga 621
Query: 301 gcaggacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaa 360
|||||| ||||| ||||| || || |||||||| |||||||||||||| |||||||||||
Sbjct: 622 gcaggatgtgaaaacattttcatcttggggtattgattatctgaaatatgacaactgcaa 681
Query: 361 cgacgccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgta 420
|| || |||||||| || |||||||| ||||| || |||||||| |||||||| || ||
Sbjct: 682 tgatgctggcaggagtgtaatggagagatatactaaaatgagcaatgctatgaaaaccta 741
Query: 421 tgg 423
|||
Sbjct: 742 tgg 744
>gb|CX611569.1|CX611569 ANR1_25_A03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_A03_A002 5', mRNA sequence
Length = 745
Score = 434 bits (219), Expect = e-120
Identities = 390/447 (87%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 298 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 357
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 358 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 417
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||| ||||||
Sbjct: 418 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccc 477
Query: 181 ctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatcta 240
|||||||||||||| ||||| || || | |||||| || ||||| ||||| ||||||||
Sbjct: 478 ttctggcatcaaggcactcgcagattatgcgcacgcaaaagggctgaagcttggcatcta 537
Query: 241 cagcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgagga 300
| | |||||||||||||| || ||||||| ||||||||||| |||||||| || || ||
Sbjct: 538 ctgtgatgctgggacacgaacatgcagcccaaaaatgccaggatcacttgatcatgaaga 597
Query: 301 gcaggacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaactgcaa 360
|||||| ||||| ||||| || || |||||||| |||||||||||||| |||||||||||
Sbjct: 598 gcaggatgtgaaaacattttcatcttggggtattgattatctgaaatatgacaactgcaa 657
Query: 361 cgacgccggcaggagcgtcatggagaggtatacgaagatgagcaacgctatgaagacgta 420
|| || |||||||| || |||||||| ||||| || |||||||| |||||||| || ||
Sbjct: 658 tgatgctggcaggagtgtaatggagagatatactaaaatgagcaatgctatgaaaaccta 717
Query: 421 tgggaagggcatcttcttctcgctgtg 447
||| ||| ||||||||||||| ||||
Sbjct: 718 tggaaagaacatcttcttctcgttgtg 744
>gb|BG357495.1|BG357495 OV2_30_F05.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 309
Score = 398 bits (201), Expect = e-109
Identities = 282/309 (91%)
Strand = Plus / Plus
Query: 647 gagtaccgctctcacttcagcatctgggcgctcgccaaggctccgcttctgatcgggtgc 706
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 1 gagtaccgctctcacttcagcatctgggcacttgccaaggctcctcttctgatcggatgc 60
Query: 707 gacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatcgcc 766
||||| || |||||||||||||||| | || ||||||||||||||| |||||||||||
Sbjct: 61 gacgtacggtcgatgagccagcagacaaaggacatactcagcaactcagaagtcatcgct 120
Query: 767 gtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttggag 826
|||||||||||||| || || || || |||||||||||||| |||| |||||||||||||
Sbjct: 121 gtgaaccaagatagtcttggtgtccaaggaaagaaagtgcaatccaacaatggcttggag 180
Query: 827 gtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcaggga 886
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 181 gtttgggctgggccactcagcaacaacaggaaggccgtggtgctctggaaccggcagggc 240
Query: 887 taccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctgtc 946
|||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||
Sbjct: 241 taccaggcaaccatcaccgcacaatggtcgagcatcgggcttgcttcatccactgctgtc 300
Query: 947 actgctcgt 955
|||||||||
Sbjct: 301 actgctcgt 309
>gb|CX617727.1|CX617727 GABR1_35_A05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_35_A05_A002 5', mRNA sequence
Length = 668
Score = 387 bits (195), Expect = e-105
Identities = 315/355 (88%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 314 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 373
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 374 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 433
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||| ||||||
Sbjct: 434 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccc 493
Query: 181 ctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatcta 240
|||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||
Sbjct: 494 ttctggcatcaaggcactcgcagattatgtgcacgcaaaagggctgaagcttggcatcta 553
Query: 241 cagcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgagga 300
||| |||||||||||||| || |||||||| ||||||||||| |||||||| || || ||
Sbjct: 554 cagtgatgctgggacacgaacatgcagccaaaaaatgccaggatcacttgatcatgaaga 613
Query: 301 gcaggacgtgaagacattctcgtcctggggtatcgattatctgaaatacgacaac 355
||| || ||||| ||||| || || |||||||| |||||||||||||| ||||||
Sbjct: 614 gcaagatgtgaaaacattttcatcttggggtattgattatctgaaatatgacaac 668
>gb|AW671405.1|AW671405 LG1_342_H12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 383 bits (193), Expect = e-104
Identities = 352/405 (86%)
Strand = Plus / Plus
Query: 36 agaaactcatcaagcagacagctgatgcgctggtcaacaccggtctggcgaagctgggct 95
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 5 agaacctcatcaagcagacagctgatgcactggtcaacactggtctggcgaaattgggct 64
Query: 96 acgagtatgtcaacatagatgattgctgggcggagtctgacagggactaccagggaagct 155
| |||||||| || ||||||||||||||||| || |||||||||||||||||||||| ||
Sbjct: 65 atgagtatgttaatatagatgattgctgggcagaatctgacagggactaccagggaaact 124
Query: 156 tcgttgcaaacagacaaaccttcccctctggcatcaaggcgctcgcggactacgtgcacg 215
| |||||| | ||||||| |||||| |||||||||||||| ||||| || || |||||||
Sbjct: 125 ttgttgcacatagacaaaacttcccttctggcatcaaggcactcgcagattatgtgcacg 184
Query: 216 ccaaggggctcaagctgggcatctacagcgatgctgggacacggacgtgcagccagaaaa 275
| || ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||
Sbjct: 185 caaaagggctgaagcttggcatctacagtgatgctgggacacgaacatgcagccaaaaaa 244
Query: 276 tgccagggtcacttgaccacgaggagcaggacgtgaagacattctcgtcctggggtatcg 335
||||||| |||||||| || || |||||||| ||||| ||||| || || |||||||| |
Sbjct: 245 tgccaggatcacttgatcatgaagagcaggatgtgaaaacattttcatcttggggtattg 304
Query: 336 attatctgaaatacgacaactgcaacgacgccggcaggagcgtcatggagaggtatacga 395
||||||||||||| ||||||||||| || || |||||||| || |||||||| ||||| |
Sbjct: 305 attatctgaaatatgacaactgcaatgatgctggcaggagtgtaatggagagatatacta 364
Query: 396 agatgagcaacgctatgaagacgtatgggaagggcatcttcttct 440
| |||||||| |||||||| || ||||| ||| |||||||||||
Sbjct: 365 aaatgagcaatgctatgaaaacctatggaaagaacatcttcttct 409
>gb|BG054054.1|BG054054 OV2_1_G12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 443
Score = 371 bits (187), Expect = e-100
Identities = 322/363 (88%), Gaps = 8/363 (2%)
Strand = Plus / Plus
Query: 794 ggaaagaaagtgcagtccagcaatggcttggaggtttgggctgggccgctcagcaacaac 853
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9 ggaaagaaagtgcaatccaacaatggcttggaggtttgggctgggccactcagcaacaac 68
Query: 854 aggaaggccgtggttctctggaaccggcagggataccaggcaaccatcaccgcgcagtgg 913
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct: 69 aggaaggccgtggtgctctggaaccggcagggctaccaggcaaccatcaccgcacaatgg 128
Query: 914 tcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcactcg 973
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcgagcatcgggcttgtttcatccactgctgtcactgctcgtgatctatgggcgcactca 188
Query: 974 tcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtat 1033
|||||||||||||| ||||| |||||||||| ||| ||||||| |||||||||||||||
Sbjct: 189 tcattctcggctcagggccaattatcagcttcagtggcacctcatgactgcaagatgtat 248
Query: 1034 gtcttgacgccgaactaact--cagaagacaagagcggattgttccatggcgcgtgggat 1091
||| |||| || || ||||| |||||||| ||||||| ||||| | |||||||
Sbjct: 249 gtcctgacaccaaattaacttatagaagacatgagcgga---gtccat--agtgtgggat 303
Query: 1092 gcaaccattcggtcaggattcagggaagaagagtatgcaggcaaggatttcaagagaagg 1151
||||||||||| ||| |||||| |||| | |||||||||||||||||||| |||| ||||
Sbjct: 304 gcaaccattcgatcaagattca-ggaaaatgagtatgcaggcaaggattttaagataagg 362
Query: 1152 aaa 1154
|||
Sbjct: 363 aaa 365
>gb|CD205942.1|CD205942 HS1_19_D01.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_D01_A012 5', mRNA sequence
Length = 616
Score = 337 bits (170), Expect = 2e-090
Identities = 259/289 (89%)
Strand = Plus / Plus
Query: 3 atagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctgatg 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 314 atagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctgatg 373
Query: 63 cgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattgct 122
| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||||
Sbjct: 374 cactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattgct 433
Query: 123 gggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttcccct 182
|||| || |||||||||||||||||||||| ||| |||||| | ||||||| |||||| |
Sbjct: 434 gggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccctt 493
Query: 183 ctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctaca 242
||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||||
Sbjct: 494 ctggcatcaaggcactcgcagattatgtgcacgcaaaagggctgaagcttggcatctaca 553
Query: 243 gcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttga 291
| |||||||||||||| || ||||||| ||||||||||| ||||||||
Sbjct: 554 gtgatgctgggacacgaacatgcagccnaaaaatgccaggatcacttga 602
>gb|BI074594.1|BI074594 IP1_13_F05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 640
Score = 329 bits (166), Expect = 4e-088
Identities = 280/318 (88%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 380
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 381 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 440
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||| || ||| |||||| | |||| || ||||||
Sbjct: 441 ctgggcagaatctgacagggactaccagcgagactttgttgcacatagacgaaacttccc 500
Query: 181 ctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatcta 240
|||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||
Sbjct: 501 ttctggcatcaaggcactcgcagattatgtgcacgcaaaagggctgaagcttggcatcta 560
Query: 241 cagcgatgctgggacacggacgtgcagccagaaaatgccagggtcacttgaccacgagga 300
||| |||||||||||||| || |||||||| ||||||||||| |||||||| || || ||
Sbjct: 561 cagtgatgctgggacacgaacatgcagccaaaaaatgccaggatcacttgatcatgaaga 620
Query: 301 gcaggacgtgaagacatt 318
||| || ||||| |||||
Sbjct: 621 gcacgatgtgaaaacatt 638
>gb|CD210471.1|CD210471 HS1_51_A02.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_51_A02_A012 5', mRNA sequence
Length = 596
Score = 321 bits (162), Expect = 9e-086
Identities = 243/270 (90%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 327 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 386
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 387 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 446
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||| ||||||
Sbjct: 447 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccc 506
Query: 181 ctctggcatcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatcta 240
|||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||||
Sbjct: 507 ttctggcatcaaggcactcgcagattatgtgcacgcaaaagggctgaagcttggcatcta 566
Query: 241 cagcgatgctgggacacggacgtgcagcca 270
||| |||||||||||||| || ||||||||
Sbjct: 567 cagtgatgctgggacacgaacatgcagcca 596
>gb|BG817495.1|BG817495 EM1_76_F10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 256 bits (129), Expect = 5e-066
Identities = 183/201 (91%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 312 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 371
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 372 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 431
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | |||| || ||||||
Sbjct: 432 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacgaaacttccc 491
Query: 181 ctctggcatcaaggcgctcgc 201
|||||||||||||| |||||
Sbjct: 492 ttctggcatcaaggcactcgc 512
>gb|CX621852.1|CX621852 GABR1_60_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_60_C08_A002 5', mRNA sequence
Length = 509
Score = 256 bits (129), Expect = 5e-066
Identities = 177/193 (91%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 376
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 377 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 436
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||| ||||||
Sbjct: 437 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaaaacttccc 496
Query: 181 ctctggcatcaag 193
||||||||||||
Sbjct: 497 ttctggcatcaag 509
>gb|CD205917.1|CD205917 HS1_19_D01.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_D01_A012 3', mRNA sequence
Length = 577
Score = 252 bits (127), Expect = 7e-065
Identities = 181/199 (90%)
Strand = Plus / Plus
Query: 704 tgcgacgtgcgcgcgatgagccagcagacgatgggcatactcagcaactcggaagtcatc 763
|||||||| || |||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 3 tgcgacgtacggtcgatgagccagcagacaaaggacatactcagcaactcagaagtcatc 62
Query: 764 gccgtgaaccaagatagcctaggcgtgcagggaaagaaagtgcagtccagcaatggcttg 823
|| |||||||||||||| || || || || |||||||||||||| |||| ||||||||||
Sbjct: 63 gctgtgaaccaagatagtcttggtgtccaaggaaagaaagtgcaatccaacaatggcttg 122
Query: 824 gaggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcag 883
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 123 gaggtttgggctgggccactcagcaacaacaggaaggccgtggtgctctggaaccggcag 182
Query: 884 ggataccaggcaaccatca 902
|| ||||||||||||||||
Sbjct: 183 ggctaccaggcaaccatca 201
Score = 101 bits (51), Expect = 2e-019
Identities = 153/183 (83%), Gaps = 8/183 (4%)
Strand = Plus / Plus
Query: 974 tcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatgtat 1033
|||||||||||||| ||||| |||||||||| ||| ||||||| |||||||||||||||
Sbjct: 199 tcattctcggctcagggccaattatcagcttcagtggcacctcatgactgcaagatgtat 258
Query: 1034 gtcttgacgccgaactaact--cagaagacaagagcggattgttccatggcgcgtgggat 1091
||| |||| || || ||||| |||||||| ||||||| ||||| | |||||||
Sbjct: 259 gtcctgacaccaaattaacttatagaagacatgagcgga---gtccat--agtgtgggat 313
Query: 1092 gcaaccattcggtcaggattcagggaagaagagtatgcaggcaaggatttcaagagaagg 1151
||||||||||| ||| |||||| |||| | ||||||||||||||||||| |||| ||||
Sbjct: 314 gcaaccattcgatcaagattca-ggaaaatgagtatgcaggcaaggattctaagataagg 372
Query: 1152 aaa 1154
|||
Sbjct: 373 aaa 375
Score = 83.8 bits (42), Expect = 4e-014
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 419 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 476
Query: 1280 agttgcagcaataaaattggcttgcccacc 1309
||||||||||||||||||||||||||||||
Sbjct: 477 agttgcagcaataaaattggcttgcccacc 506
>gb|BG948582.1|BG948582 IP1_11_D11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 507
Score = 250 bits (126), Expect = 3e-064
Identities = 177/194 (91%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 372
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 373 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 432
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaaaccttccc 180
|||||| || |||||||||||||||||||||| ||| |||||| | |||| || ||||||
Sbjct: 433 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagactaaacttccc 492
Query: 181 ctctggcatcaagg 194
|||||||||||||
Sbjct: 493 ttctggcatcaagg 506
>gb|BG948269.1|BG948269 IP1_11_D11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 450
Score = 248 bits (125), Expect = 1e-063
Identities = 179/197 (90%)
Strand = Plus / Plus
Query: 845 agcaacaacaggaaggccgtggttctctggaaccggcagggataccaggcaaccatcacc 904
||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct: 1 agcaacaacaggaagtccgtggtgctctggaaccggcaggcctaccaggcacccatcacc 60
Query: 905 gcgcagtggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgg 964
|| || |||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 61 gcacaatggtcgagcatcggccttgcttcatccactgctgtcactgctcgtgatctatgg 120
Query: 965 gcgcactcgtcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgc 1024
|||||||| |||||||||||||| ||||| |||||||||| ||| ||||||| ||||||
Sbjct: 121 gcgcactcatcattctcggctcagggccaattatcagcttcagtggcacctcatgactgc 180
Query: 1025 aagatgtatgtcttgac 1041
|||||||||||||||||
Sbjct: 181 aagatgtatgtcttgac 197
Score = 75.8 bits (38), Expect = 9e-012
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 351 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 408
Query: 1280 agttgcagcaataaaattggcttgcccacc 1309
||||||| ||||||||||||||||||||||
Sbjct: 409 agttgcaccaataaaattggcttgcccacc 438
Score = 67.9 bits (34), Expect = 2e-009
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1085 gtgggatgcaaccattcggtcaggattcagggaagaagagtatgcaggcaaggatttcaa 1144
|||||||||||||||||| ||| |||||| |||| | ||||||||||||||||||| ||
Sbjct: 238 gtgggatgcaaccattcgatcaagattca-ggaaaatgagtatgcaggcaaggattctaa 296
Query: 1145 gagaaggaaa 1154
|| |||||||
Sbjct: 297 gataaggaaa 306
>gb|BE596271.1|BE596271 PI1_51_F09.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 505
Score = 230 bits (116), Expect = 3e-058
Identities = 178/196 (90%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 307 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 366
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 367 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 426
Query: 121 ctgggcggagtctgaca-gggactaccagggaagcttcgttgcaaacagacaaaccttcc 179
|||||| || ||||||| |||||||||| |||| ||| |||||| | ||||||| |||||
Sbjct: 427 ctgggcagaatctgacaggggactacca-ggaaactttgttgcacatagacaaaacttcc 485
Query: 180 cctctggcatcaaggc 195
| ||||||||||||||
Sbjct: 486 cttctggcatcaaggc 501
>gb|BI351530.1|BI351530 IP1_72_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 483
Score = 230 bits (116), Expect = 3e-058
Identities = 158/172 (91%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacagctga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 312 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacagctga 371
Query: 61 tgcgctggtcaacaccggtctggcgaagctgggctacgagtatgtcaacatagatgattg 120
||| ||||||||||| ||||||||||| ||||||| |||||||| || |||||||||||
Sbjct: 372 tgcactggtcaacactggtctggcgaaattgggctatgagtatgttaatatagatgattg 431
Query: 121 ctgggcggagtctgacagggactaccagggaagcttcgttgcaaacagacaa 172
|||||| || |||||||||||||||||||||| ||| |||||| | ||||||
Sbjct: 432 ctgggcagaatctgacagggactaccagggaaactttgttgcacatagacaa 483
>gb|BI351463.1|BI351463 IP1_72_A07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 399
Score = 222 bits (112), Expect = 7e-056
Identities = 238/276 (86%), Gaps = 8/276 (2%)
Strand = Plus / Plus
Query: 881 cagggataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccact 940
||||| |||||||||||||||||||| || ||||||||||||||||| |||| ||||||
Sbjct: 1 cagggctaccaggcaaccatcaccgcacaatggtcgagcatcgggcttgcttcatccact 60
Query: 941 gctgtcactgctcgtgatctatgggcgcactcgtcattctcggctcaaggccagctatca 1000
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 61 gctgtcactgctcgcgatctatgggcgcactcatcattctcggctcagggccaattatca 120
Query: 1001 gcttcggtgccacctcacgactgcaagatgtatgtcttgacgccgaactaact--cagaa 1058
||||| ||| ||||||| |||||||||||||||||| |||| || || ||||| ||||
Sbjct: 121 gcttcagtggcacctcatgactgcaagatgtatgtcctgacaccaaattaacttatagaa 180
Query: 1059 gacaagagcggattgttccatggcgcgtgggatgcaaccattcggtcaggattcagggaa 1118
|||| ||||||| ||||| | |||||||||||||||||| ||| |||||| ||||
Sbjct: 181 gacatgagcgga---gtccat--agtgtgggatgcaaccattcgatcaagattca-ggaa 234
Query: 1119 gaagagtatgcaggcaaggatttcaagagaaggaaa 1154
| ||||||||||||||||||| |||| |||||||
Sbjct: 235 aatgagtatgcaggcaaggattctaagataaggaaa 270
Score = 77.8 bits (39), Expect = 2e-012
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1220 aagtgtatctaaggcgccgtcaaaatgccggtgcctgtgttactggatgtttgtaacgag 1279
|||||||||||||| ||||||||| || |||||||||| || ||| |||||| ||| |
Sbjct: 314 aagtgtatctaaggagccgtcaaa-tgtcggtgcctgtatt-ctgagtgtttgcaacaaa 371
Query: 1280 agttgcagcaataaaattggcttgccc 1306
|||||||||||||||||||||||||||
Sbjct: 372 agttgcagcaataaaattggcttgccc 398
>gb|CW051026.1|CW051026 104_291_10515005_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515005, DNA
sequence
Length = 388
Score = 220 bits (111), Expect = 3e-055
Identities = 135/143 (94%)
Strand = Plus / Plus
Query: 825 aggtttgggctgggccgctcagcaacaacaggaaggccgtggttctctggaaccggcagg 884
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 172 aggtttgggctgggccactcagcaacaacaggaaggccgtggtgctctggaaccggcagg 231
Query: 885 gataccaggcaaccatcaccgcgcagtggtcgagcatcgggctcccttcttccactgctg 944
| |||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||
Sbjct: 232 gctaccaggcaaccatcaccgcacaatggtcgagcatcgggcttgcttcatccactgctg 291
Query: 945 tcactgctcgtgatctatgggcg 967
|||||||||||||||||||||||
Sbjct: 292 tcactgctcgtgatctatgggcg 314
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 794 ggaaagaaagtgcagtccagcaatggcttggaggt 828
|||||||||||||| |||| |||||||||||||||
Sbjct: 19 ggaaagaaagtgcaatccaacaatggcttggaggt 53
>gb|CD207091.1|CD207091 HS1_27_B10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_27_B10_A012 3', mRNA sequence
Length = 607
Score = 186 bits (94), Expect = 4e-045
Identities = 184/214 (85%)
Strand = Plus / Plus
Query: 210 tgcacgccaaggggctcaagctgggcatctacagcgatgctgggacacggacgtgcagcc 269
||||||| || ||||| ||||| ||||||||||| |||||||||||||| || |||||||
Sbjct: 42 tgcacgcaaaagggctgaagcttggcatctacagtgatgctgggacacgaacatgcagcc 101
Query: 270 agaaaatgccagggtcacttgaccacgaggagcaggacgtgaagacattctcgtcctggg 329
| ||||||||||| |||||||| || || |||||||| ||||| ||||| || || ||||
Sbjct: 102 aaaaaatgccaggatcacttgatcatgaagagcaggatgtgaaaacattttcatcttggg 161
Query: 330 gtatcgattatctgaaatacgacaactgcaacgacgccggcaggagcgtcatggagaggt 389
|||| |||||||||||||| ||||||||||| || || |||||||| || |||||||| |
Sbjct: 162 gtattgattatctgaaatatgacaactgcaatgatgctggcaggagtgtaatggagagat 221
Query: 390 atacgaagatgagcaacgctatgaagacgtatgg 423
|||| || |||||||| |||||||| || |||||
Sbjct: 222 atactaaaatgagcaatgctatgaaaacctatgg 255
>gb|BG159427.1|BG159427 OV2_7_G06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 313
Score = 151 bits (76), Expect = 2e-034
Identities = 196/232 (84%), Gaps = 8/232 (3%)
Strand = Plus / Plus
Query: 911 tggtcgagcatcgggctcccttcttccactgctgtcactgctcgtgatctatgggcgcac 970
||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 7 tggtcgagcatcgggcttgcttcatcctctgctgtcactgctcgtgatctatgggcgcac 66
Query: 971 tcgtcattctcggctcaaggccagctatcagcttcggtgccacctcacgactgcaagatg 1030
|| |||||||||| ||| ||||| |||||||||| ||| ||||||| || ||||| |||
Sbjct: 67 tcatcattctcggatcagggccaattatcagcttcagtggcacctcatgagtgcaaaatg 126
Query: 1031 tatgtcttgacgccgaactaact--cagaagacaagagcggattgttccatggcgcgtgg 1088
||||||||||| || || ||||| |||||||| ||||||| ||||| | ||||
Sbjct: 127 tatgtcttgacaccaaattaacttatagaagacatgagcgga---gtccat--agtgtgg 181
Query: 1089 gatgcaaccattcggtcaggattcagggaagaagagtatgcaggcaaggatt 1140
|||||| ||||| | ||| |||||| |||| | |||||||||||||||||||
Sbjct: 182 gatgcagccattagatcaagattca-ggaaaatgagtatgcaggcaaggatt 232
>gb|CW341607.1|CW341607 104_843_11486424_116_36160_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486424, DNA
sequence
Length = 609
Score = 103 bits (52), Expect = 4e-020
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacag 56
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 366 gaatagctggaaccacttcggctgcgggatcaacgagaacctcatcaagcagacag 421
>gb|CW264592.1|CW264592 104_733_11231388_116_35254_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231388, DNA
sequence
Length = 623
Score = 95.6 bits (48), Expect = 1e-017
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 146 cagggaagcttcgttgcaaacagacaaaccttcccctctggcatcaaggcgctcgcggac 205
||||||| ||| |||||| | ||||||| |||||| |||||||||||||| ||||| ||
Sbjct: 511 cagggaaactttgttgcacatagacaaaacttcccttctggcatcaaggcactcgcagat 452
Query: 206 tacgtgcacgccaaggggctcaagctgggcatctacagcgatgctggg 253
|| |||||||| || ||||| ||||| ||||||||||| |||||||||
Sbjct: 451 tatgtgcacgcaaaagggctgaagcttggcatctacagtgatgctggg 404
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 252 ggacacggacgtgcagccagaaaatgccagggtcacttgaccacgaggagcaggacgtga 311
||||||| || |||||||| ||||||||||| |||||||| || || |||||||| ||||
Sbjct: 251 ggacacgaacatgcagccaaaaaatgccaggatcacttgatcatgaagagcaggatgtga 192
Query: 312 agacatt 318
| |||||
Sbjct: 191 aaacatt 185
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 328 gggtatcgattatctgaaatacgacaactgcaacgacgccggcaggagcgtcatggaga 386
|||||| |||||||||||||| ||||||||||| || || |||||||| || |||||||
Sbjct: 59 gggtattgattatctgaaatatgacaactgcaatgatgctggcaggagtgtaatggaga 1
>gb|CW341608.1|CW341608 104_843_11486424_148_36159_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486424, DNA
sequence
Length = 673
Score = 95.6 bits (48), Expect = 1e-017
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 1 gaatagctggaaccacttcggctgcgggatcaacgagaaactcatcaagcagacag 56
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 gaatagctggacccacttcggctgcgggatcaacgagaacctcatcaagcagacag 561
>gb|CW035999.1|CW035999 104_267_10503499_115_30375 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503499, DNA
sequence
Length = 470
Score = 69.9 bits (35), Expect = 6e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 328 gggtatcgattatctgaaatacgacaactgcaacgacgccggcaggagcgtcatggagag 387
|||||| |||||||||||||| ||||||||||| || || |||||||| || ||||||||
Sbjct: 346 gggtattgattatctgaaatatgacaactgcaatgatgctggcaggagtgtaatggagag 287
Query: 388 gta 390
|||
Sbjct: 286 gta 284
Score = 67.9 bits (34), Expect = 2e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 462 aaaaccctgctacctgggcaggcggcatggggaacagctggagaac 507
|||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 47 aaaatcctgctacctgggcaggcagcatgggaaacagctggagaac 2
Score = 52.0 bits (26), Expect = 1e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 389 tatacgaagatgagcaacgctatgaagacgtatgggaagggcatcttcttctcgctgtgc 448
||||| || |||||||| |||||||| || ||||| ||| ||||||||||||| ||||
Sbjct: 205 tatactaaaatgagcaatgctatgaaaacctatggaaagaacatcttcttctcgttgtgt 146
Query: 449 gaatgg 454
||||||
Sbjct: 145 gaatgg 140
>gb|CW035998.1|CW035998 104_267_10503499_114_30374 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503499, DNA
sequence
Length = 598
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 54 cagctgatgcgctggtcaacaccggtctggcgaagctgggctacgagtatgt 105
|||||||||| ||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 343 cagctgatgcactggtcaacactggtctggcgaaattgggctatgagtatgt 394
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 112 agatgattgctgggcggagtctgacagggactaccagg 149
||||||||||||||| || |||||||||||||||||||
Sbjct: 484 agatgattgctgggcagaatctgacagggactaccagg 521
>gb|CW264593.1|CW264593 104_733_11231388_148_35250_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231388, DNA
sequence
Length = 702
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 54 cagctgatgcgctggtcaacaccggtctggcgaagctgggctacgagtatgt 105
|||||||||| ||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 320 cagctgatgcactggtcaacactggtctggcgaaattgggctatgagtatgt 371
Score = 60.0 bits (30), Expect = 6e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 112 agatgattgctgggcggagtctgacagggactaccagg 149
||||||||||||||| || |||||||||||||||||||
Sbjct: 461 agatgattgctgggcagaatctgacagggactaccagg 498
>gb|BE355859.1|BE355859 DG1_11_C11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 525
Score = 63.9 bits (32), Expect = 4e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 590 ggcgggtggaacgatcctgacatgcttgaggtgggcaacggcggcatg 637
||||| ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 312 ggcggctggaacgatccggacatgctggaggtgggcaacgggggcatg 359
>gb|CW482095.1|CW482095 fsbb001f242a04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f242a04, DNA
sequence
Length = 829
Score = 60.0 bits (30), Expect = 6e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 54 cagctgatgcgctggtcaacaccggtctggcgaagctgggctacgagtat 103
|||||||||| ||||||||||| ||||||||||| ||||||| ||||||
Sbjct: 53 cagctgatgcactggtcaacactggtctggcgaaattgggctatgagtat 4
>gb|BI074279.1|BI074279 IP1_13_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 158
Score = 60.0 bits (30), Expect = 6e-007
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1085 gtgggatgcaaccattcggtcaggattcagggaagaagagtatgcaggcaaggatttcaa 1144
|||||||||||||||||| ||| |||||| |||| | |||| ||||||||||| ||| ||
Sbjct: 21 gtgggatgcaaccattcgttcaagattca-ggaaaatgagtttgcaggcaaggtttttaa 79
Query: 1145 gagaaggaaa 1154
|| |||||||
Sbjct: 80 gataaggaaa 89
>gb|CW023116.1|CW023116 104_162_10432256_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432256, DNA
sequence
Length = 538
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 174 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 227
>gb|CW050339.1|CW050339 104_290_10514603_114_30195 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514603, DNA
sequence
Length = 196
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 132 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 79
>gb|CW064465.1|CW064465 104_310_10522586_114_30142 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522586, DNA
sequence
Length = 672
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 608 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 555
>gb|CW064466.1|CW064466 104_310_10522586_115_30146 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522586, DNA
sequence
Length = 486
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 316 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 369
>gb|CW147966.1|CW147966 104_542_11140168_116_35003_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140168, DNA
sequence
Length = 682
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 133 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 186
>gb|CW181890.1|CW181890 104_597_11163759_116_36655_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163759, DNA
sequence
Length = 610
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 307 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 360
>gb|CW260187.1|CW260187 104_726_11228830_148_35189_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228830, DNA
sequence
Length = 619
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 87 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 140
>gb|CW366402.1|CW366402 fsbb001f039g08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039g08, DNA
sequence
Length = 528
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 172 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 225
>gb|CW463034.1|CW463034 fsbb001f211h04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211h04, DNA
sequence
Length = 523
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 382 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 435
>gb|BE600676.1|BE600676 PI1_91_C09.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 521
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 159 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 212
Score = 44.1 bits (22), Expect = 0.033
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 292 ccacgaggagcaggacgtgaagacattctcgtcctggggtatcgattatctgaaatacga 351
||||||||||||||||| ||||| ||| || | ||||| | ||||| || || |||||
Sbjct: 263 ccacgaggagcaggacgccaagaccttcgcggcatggggagtggattacctcaagtacga 322
Query: 352 caactgcaac 361
||||||||||
Sbjct: 323 caactgcaac 332
>gb|BG487558.1|BG487558 EM1_67_E07.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 52.0 bits (26), Expect = 1e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 188 atcaaggcgctcgcggactacgtgcacgccaaggggctcaagctgggcatctac 241
||||||||||| ||||| ||||| ||| ||||||||||||||| || ||||||
Sbjct: 388 atcaaggcgctggcggattacgtccacagcaaggggctcaagctcgggatctac 441
>gb|CW096526.1|CW096526 104_462_11001943_116_34348_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001943, DNA
sequence
Length = 607
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 602 gatcctgacatgcttgaggtgggcaacggcggcatg 637
||||| |||||||| |||||||||||||| ||||||
Sbjct: 74 gatccggacatgctggaggtgggcaacgggggcatg 39
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 290,400
Number of Sequences: 832831
Number of extensions: 290400
Number of successful extensions: 80121
Number of sequences better than 0.5: 54
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79971
Number of HSP's gapped (non-prelim): 128
length of query: 1341
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1321
effective length of database: 474,703,049
effective search space: 627082727729
effective search space used: 627082727729
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)