BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM10b11.yg.2.1
(554 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG052961.1|BG052961 RHIZ2_15_E12.b1_A003 Rhizome2 (RHIZ2... 174 6e-042
gb|BG053088.1|BG053088 RHIZ2_16_E01.b1_A003 Rhizome2 (RHIZ2... 174 6e-042
gb|CL176261.1|CL176261 104_382_10893014_148_31762_230 Sorgh... 100 3e-019
gb|CW108986.1|CW108986 104_480_11097816_116_34494_082 Sorgh... 100 3e-019
gb|CW369347.1|CW369347 fsbb001f043l13k0 Sorghum methylation... 100 3e-019
gb|CW486628.1|CW486628 fsbb001f252a05k0 Sorghum methylation... 98 1e-018
gb|BZ346466.1|BZ346466 hv19d02.b1 WGS-SbicolorF (JM107 adap... 90 3e-016
gb|CW262804.1|CW262804 104_730_11230283_116_35223_038 Sorgh... 90 3e-016
gb|CW231449.1|CW231449 104_680_11211126_148_37338_019 Sorgh... 78 1e-012
gb|CW135088.1|CW135088 104_519_11117658_148_34827_071 Sorgh... 72 6e-011
gb|CW388305.1|CW388305 fsbb001f073a03k0 Sorghum methylation... 60 2e-007
gb|CW486627.1|CW486627 fsbb001f252a05f0 Sorghum methylation... 60 2e-007
gb|CN140896.1|CN140896 OX1_47_G09.g1_A002 Oxidatively-stres... 60 2e-007
gb|CW021070.1|CW021070 104_109_10409329_114_30493 Sorghum m... 58 9e-007
gb|CW052279.1|CW052279 104_292_10515502_114_30189 Sorghum m... 58 9e-007
gb|CW052280.1|CW052280 104_292_10515502_114_30286 Sorghum m... 58 9e-007
gb|CW053347.1|CW053347 104_293_10515912_115_30191 Sorghum m... 58 9e-007
gb|CW150914.1|CW150914 104_551_11143663_148_36312_024 Sorgh... 58 9e-007
gb|CW184313.1|CW184313 104_600_11165084_148_36687_072 Sorgh... 58 9e-007
gb|CW315696.1|CW315696 104_806_11472500_116_35824_066 Sorgh... 58 9e-007
gb|CW364276.1|CW364276 fsbb001f036e02f0 Sorghum methylation... 58 9e-007
gb|CW364277.1|CW364277 fsbb001f036e02k0 Sorghum methylation... 58 9e-007
gb|CW438144.1|CW438144 fsbb001f155j19k0 Sorghum methylation... 58 9e-007
gb|BZ351163.1|BZ351163 hv19d02.g1 WGS-SbicolorF (JM107 adap... 56 4e-006
gb|CF428787.1|CF428787 PH1_17_E09.g1_A002 Phosphorous-defic... 56 4e-006
gb|CL190791.1|CL190791 104_409_10906327_114_32488_028 Sorgh... 54 1e-005
gb|CL190792.1|CL190792 104_409_10906327_116_32496_028 Sorgh... 54 1e-005
gb|CW062232.1|CW062232 104_307_10521225_5_30083 Sorghum met... 54 1e-005
gb|CW388304.1|CW388304 fsbb001f073a03f0 Sorghum methylation... 54 1e-005
gb|CW479063.1|CW479063 fsbb001f237e21f0 Sorghum methylation... 54 1e-005
gb|CF761849.1|CF761849 DSAF1_82_F02.b1_A011 Drought-stresse... 50 2e-004
gb|CW416404.1|CW416404 fsbb001f116o23k0 Sorghum methylation... 44 0.013
gb|CD204277.1|CD204277 HS1_4_B08.g1_A012 Heat-shocked seedl... 44 0.013
gb|CD212473.1|CD212473 HS1_5_G10.g1_A012 Heat-shocked seedl... 44 0.013
gb|CN140978.1|CN140978 OX1_48_C08.g1_A002 Oxidatively-stres... 44 0.013
gb|CD204879.1|CD204879 HS1_10_E12.g1_A012 Heat-shocked seed... 42 0.053
gb|AC169374.1| Sorghum bicolor clone SB_BBc0019I06, WORKING... 40 0.21
>gb|BG052961.1|BG052961 RHIZ2_15_E12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 452
Score = 174 bits (88), Expect = 6e-042
Identities = 262/320 (81%)
Strand = Plus / Plus
Query: 233 tcacgatacactagcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagc 292
|||| ||| ||||||||||||||||| || | ||| | |||| |||| ||||| || ||
Sbjct: 26 tcacaatatactagcgacggaacgcttgacgttaacgatcagcctgctttgaagcagcgc 85
Query: 293 accgggaactggagagcatgcttcatgattctgggtaccgagttcgccgaatgcctggca 352
|||||||| ||||||||||||||||| ||| | |||||||||||| | |||| |||||||
Sbjct: 86 accgggaattggagagcatgcttcattattttaggtaccgagttcacggaatccctggca 145
Query: 353 ttttacgcgaccgcaaagaacctggtcacctacctcacggctgagcttggtgagaccaac 412
|||| ||| | |||||||||| ||||||| |||| | ||||||| ||| |||
Sbjct: 146 tttttcgctatatcaaagaacctaatcacctatctcatgactgagctccacgagcgcaat 205
Query: 413 atcgatgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatc 472
| |||||||||| | | || || |||||||||||||| |||| |||||| || || |||
Sbjct: 206 gtggatgccgcgagggatgtctctacctggattggcagttgcttcctcacacctcttatc 265
Query: 473 agcgccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttg 532
| ||||||||||||||||| || |||||| |||||||||||| ||||||||||||||
Sbjct: 266 ggagccttcttggccgacacatattggggagcatacaagacgatagtagtcttcctcttg 325
Query: 533 ctctacatcgttgggatgct 552
|||||| ||||||||||||
Sbjct: 326 gtctacaccgttgggatgct 345
>gb|BG053088.1|BG053088 RHIZ2_16_E01.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 404
Score = 174 bits (88), Expect = 6e-042
Identities = 262/320 (81%)
Strand = Plus / Plus
Query: 233 tcacgatacactagcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagc 292
|||| ||| ||||||||||||||||| || | ||| | |||| |||| ||||| || ||
Sbjct: 26 tcacaatatactagcgacggaacgcttgacgttaacgatcagcctgctttgaagcagcgc 85
Query: 293 accgggaactggagagcatgcttcatgattctgggtaccgagttcgccgaatgcctggca 352
|||||||| ||||||||||||||||| ||| | |||||||||||| | |||| |||||||
Sbjct: 86 accgggaattggagagcatgcttcattattttaggtaccgagttcacggaatccctggca 145
Query: 353 ttttacgcgaccgcaaagaacctggtcacctacctcacggctgagcttggtgagaccaac 412
|||| ||| | |||||||||| ||||||| |||| | ||||||| ||| |||
Sbjct: 146 tttttcgctatatcaaagaacctaatcacctatctcatgactgagctccacgagcgcaat 205
Query: 413 atcgatgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatc 472
| |||||||||| | | || || |||||||||||||| |||| |||||| || || |||
Sbjct: 206 gtggatgccgcgagggatgtctctacctggattggcagttgcttcctcacacctcttatc 265
Query: 473 agcgccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttg 532
| ||||||||||||||||| || |||||| |||||||||||| ||||||||||||||
Sbjct: 266 ggagccttcttggccgacacatattggggagcatacaagacgatagtagtcttcctcttg 325
Query: 533 ctctacatcgttgggatgct 552
|||||| ||||||||||||
Sbjct: 326 gtctacaccgttgggatgct 345
>gb|CL176261.1|CL176261 104_382_10893014_148_31762_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893014, DNA
sequence
Length = 447
Score = 99.6 bits (50), Expect = 3e-019
Identities = 110/130 (84%)
Strand = Plus / Plus
Query: 416 gatgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagc 475
|||||||||| | | || || |||||||||||||| |||| |||||| || || ||| |
Sbjct: 34 gatgccgcgagggatgtctctacctggattggcagttgcttcctcacacctcttatcgga 93
Query: 476 gccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttgctc 535
||||||||||||||||| || |||||| |||||||||||| |||||||||||||| ||
Sbjct: 94 gccttcttggccgacacatattggggagcatacaagacgatagtagtcttcctcttggtc 153
Query: 536 tacatcgttg 545
|||| |||||
Sbjct: 154 tacaccgttg 163
>gb|CW108986.1|CW108986 104_480_11097816_116_34494_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097816, DNA
sequence
Length = 505
Score = 99.6 bits (50), Expect = 3e-019
Identities = 110/130 (84%)
Strand = Plus / Plus
Query: 416 gatgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagc 475
|||||||||| | | || || |||||||||||||| |||| |||||| || || ||| |
Sbjct: 272 gatgccgcgagggatgtctctacctggattggcagttgcttcctcacacctcttatcgga 331
Query: 476 gccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttgctc 535
||||||||||||||||| || |||||| |||||||||||| |||||||||||||| ||
Sbjct: 332 gccttcttggccgacacatattggggagcatacaagacgatagtagtcttcctcttggtc 391
Query: 536 tacatcgttg 545
|||| |||||
Sbjct: 392 tacaccgttg 401
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 272 cagcgtgctctgaagaagagcaccgggaactggagagcatgcttcat 318
|||| |||| ||||| || ||| |||||| |||||||||||||||||
Sbjct: 22 cagcctgctttgaagcagcgcatcgggaattggagagcatgcttcat 68
>gb|CW369347.1|CW369347 fsbb001f043l13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f043l13, DNA
sequence
Length = 782
Score = 99.6 bits (50), Expect = 3e-019
Identities = 110/130 (84%)
Strand = Plus / Plus
Query: 416 gatgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagc 475
|||||||||| | | || || |||||||||||||| |||| |||||| || || ||| |
Sbjct: 509 gatgccgcgagggatgtctctacctggattggcagttgcttcctcacacctcttatcgga 568
Query: 476 gccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttgctc 535
||||||||||||||||| || |||||| |||||||||||| |||||||||||||| ||
Sbjct: 569 gccttcttggccgacacatattggggagcatacaagacgatagtagtcttcctcttggtc 628
Query: 536 tacatcgttg 545
|||| |||||
Sbjct: 629 tacaccgttg 638
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 233 tcacgatacactagcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagc 292
|||| ||| ||||||||||||||||| || | ||| | |||| |||| ||||| || ||
Sbjct: 220 tcacaatatactagcgacggaacgcttgacgttaacgatcagcctgctttgaagcagcgc 279
Query: 293 accgggaactggagagcatgcttcat 318
| |||||| |||||||||||||||||
Sbjct: 280 atcgggaattggagagcatgcttcat 305
>gb|CW486628.1|CW486628 fsbb001f252a05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252a05, DNA
sequence
Length = 492
Score = 97.6 bits (49), Expect = 1e-018
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 437 acctggattggcagctgctacctcacgccgctcatcagcgccttcttggccgacacgtac 496
|||||||||||||| |||| |||||| || || ||| | ||||||||||||||||| ||
Sbjct: 480 acctggattggcagttgcttcctcacacctcttatcggagccttcttggccgacacatat 421
Query: 497 tggggaagatacaagacgatgatagtcttcctcttgctctacatcgttg 545
|||||| |||||||||||| |||||||||||||| |||||| |||||
Sbjct: 420 tggggagcatacaagacgatagtagtcttcctcttggtctacaccgttg 372
>gb|BZ346466.1|BZ346466 hv19d02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv19d02 5', DNA sequence
Length = 507
Score = 89.7 bits (45), Expect = 3e-016
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 246 gcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagcaccgggaactgga 305
||||||||||||| ||||| ||| | |||| |||||||||| || |||||||||| ||||
Sbjct: 410 gcgacggaacgcttgatattaacgatcagcctgctctgaagcagcgcaccgggaattgga 351
Query: 306 gagcatgcttcatgatt 322
|||||||||||||||||
Sbjct: 350 gagcatgcttcatgatt 334
Score = 50.1 bits (25), Expect = 2e-004
Identities = 67/82 (81%), Gaps = 8/82 (9%)
Strand = Plus / Minus
Query: 326 ggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaa--------gaacctgg 377
||||||||||||| |||||||||||||||| ||| | |||||| ||||||||
Sbjct: 159 ggtaccgagttcgttgaatgcctggcatttttcgctatcgcaaattcgcaatgaacctgg 100
Query: 378 tcacctacctcacggctgagct 399
||||||| ||||||| ||||||
Sbjct: 99 tcacctatctcacgggtgagct 78
>gb|CW262804.1|CW262804 104_730_11230283_116_35223_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230283, DNA
sequence
Length = 633
Score = 89.7 bits (45), Expect = 3e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 416 gatgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagc 475
|||||||||| | | || || |||||||||||||| |||| |||||| || || ||| |
Sbjct: 517 gatgccgcgagggatgtctctacctggattggcagttgcttcctcacacctcttatcgga 576
Query: 476 gccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttg 532
||||||||||||||||| || |||||| |||||||||||| ||||||||||||||
Sbjct: 577 gccttcttggccgacacatattggggagcatacaagacgatagtagtcttcctcttg 633
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 233 tcacgatacactagcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagc 292
|||| ||| ||||||||||||||||| || | ||| | |||| |||| ||||| || ||
Sbjct: 228 tcacaatatactagcgacggaacgcttgacgttaacgatcagcctgctttgaagcagcgc 287
Query: 293 accgggaactggagagcatgcttcat 318
| |||||| |||||||||||||||||
Sbjct: 288 atcgggaattggagagcatgcttcat 313
>gb|CW231449.1|CW231449 104_680_11211126_148_37338_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211126, DNA
sequence
Length = 687
Score = 77.8 bits (39), Expect = 1e-012
Identities = 123/151 (81%)
Strand = Plus / Minus
Query: 358 cgcgaccgcaaagaacctggtcacctacctcacggctgagcttggtgagaccaacatcga 417
||||| |||||||||| ||||||| |||||||||| || ||| |||| |||| ||||
Sbjct: 201 cgcgatcgcaaagaacttggtcacttacctcacgggtgtgctccacgagagcaacgtcga 142
Query: 418 tgccgcgacgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagcgc 477
||| ||||||| |||||||| |||||||| | | | | |||||||||||||| | ||
Sbjct: 141 tgctgcgacgactgtgtccacgtggattgggacttcattcttcacgccgctcatcggagc 82
Query: 478 cttcttggccgacacgtactggggaagatac 508
|||||||||||||| | ||||||| |||||
Sbjct: 81 gttcttggccgacacattctggggacgatac 51
>gb|CW135088.1|CW135088 104_519_11117658_148_34827_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117658, DNA
sequence
Length = 665
Score = 71.9 bits (36), Expect = 6e-011
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 476 gccttcttggccgacacgtactggggaagatacaagacgatgatagtcttcctcttgctc 535
||||||||||||||||| || ||||||| |||||||||||| |||| ||||||||| ||
Sbjct: 478 gccttcttggccgacacatattggggaacatacaagacgatagtagttttcctcttggtc 537
Query: 536 taca 539
||||
Sbjct: 538 taca 541
Score = 50.1 bits (25), Expect = 2e-004
Identities = 67/82 (81%), Gaps = 8/82 (9%)
Strand = Plus / Plus
Query: 326 ggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaa--------gaacctgg 377
||||||||||||| |||||||||||||||| ||| | |||||| ||||||||
Sbjct: 106 ggtaccgagttcgttgaatgcctggcatttttcgctatcgcaaattcgcaatgaacctgg 165
Query: 378 tcacctacctcacggctgagct 399
||||||| ||||||| ||||||
Sbjct: 166 tcacctatctcacgggtgagct 187
>gb|CW388305.1|CW388305 fsbb001f073a03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073a03, DNA
sequence
Length = 673
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 233 tcacgatacactagcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagc 292
|||| ||| ||||||||||||||||| || | ||| | |||| |||| ||||| || ||
Sbjct: 348 tcacaatatactagcgacggaacgcttgacgttaacgatcagcctgctttgaagcagcgc 289
Query: 293 accgggaactggagagcatgcttcat 318
| |||||| |||||||||||||||||
Sbjct: 288 atcgggaattggagagcatgcttcat 263
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagg 218
||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 636 gcagatgaggagatgccactgattcattacctatctccagagg 594
Score = 40.1 bits (20), Expect = 0.21
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 326 ggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaagaacctggtcacctac 385
|||||||||||| | |||| ||||||||||| ||| | |||||||||| |||||||
Sbjct: 149 ggtaccgagttcacggaatccctggcatttttcgctatatcaaagaacctaatcacctat 90
Query: 386 ctca 389
||||
Sbjct: 89 ctca 86
>gb|CW486627.1|CW486627 fsbb001f252a05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252a05, DNA
sequence
Length = 507
Score = 60.0 bits (30), Expect = 2e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 233 tcacgatacactagcgacggaacgctcgatatcaacaagcagcgtgctctgaagaagagc 292
|||| ||| ||||||||||||||||| || | ||| | |||| |||| ||||| || ||
Sbjct: 173 tcacaatatactagcgacggaacgcttgacgttaacgatcagcctgctttgaagcagcgc 232
Query: 293 accgggaactggagagcatgcttcat 318
| |||||| |||||||||||||||||
Sbjct: 233 atcgggaattggagagcatgcttcat 258
Score = 40.1 bits (20), Expect = 0.21
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 326 ggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaagaacctggtcacctac 385
|||||||||||| | |||| ||||||||||| ||| | |||||||||| |||||||
Sbjct: 372 ggtaccgagttcacggaatccctggcatttttcgctatatcaaagaacctaatcacctat 431
Query: 386 ctca 389
||||
Sbjct: 432 ctca 435
>gb|CN140896.1|CN140896 OX1_47_G09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_47_G09_A002 5', mRNA sequence
Length = 692
Score = 60.0 bits (30), Expect = 2e-007
Identities = 150/190 (78%)
Strand = Plus / Plus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttcatg 319
||||| ||||| |||||||||| |||| |||||| ||||||||||| ||||||||| |
Sbjct: 305 gatattaacaaccagcgtgctccgaagcggagcacggggaactggagggcatgcttcttt 364
Query: 320 attctgggtaccgagttcgccgaatgcctggcattttacgcgaccgcaaagaacctggtc 379
||| | ||| | || ||| | ||||| |||| | ||||| | | |||||||| |||||
Sbjct: 365 attttaggtgctgaattcactgaatgtgtggccgtctacgcaatcacaaagaacttggtc 424
Query: 380 acctacctcacggctgagcttggtgagaccaacatcgatgccgcgacgaacgtgtccacc 439
| ||||||||| | || || |||| |||| ||||||| ||||| | ||||||||||
Sbjct: 425 agctacctcactggtgtcctccacgagagcaacgtcgatgctgcgacaaccgtgtccacc 484
Query: 440 tggattggca 449
||||| ||||
Sbjct: 485 tggatcggca 494
Score = 48.1 bits (24), Expect = 9e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 178 agatgaggagaggccactgattca 201
||||||||||||||||||||||||
Sbjct: 229 agatgaggagaggccactgattca 252
>gb|CW021070.1|CW021070 104_109_10409329_114_30493 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409329, DNA
sequence
Length = 733
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 386 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 330
>gb|CW052279.1|CW052279 104_292_10515502_114_30189 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515502, DNA
sequence
Length = 560
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 376 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 320
>gb|CW052280.1|CW052280 104_292_10515502_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515502, DNA
sequence
Length = 768
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 377 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 321
>gb|CW053347.1|CW053347 104_293_10515912_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515912, DNA
sequence
Length = 587
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 474 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 418
>gb|CW150914.1|CW150914 104_551_11143663_148_36312_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143663, DNA
sequence
Length = 659
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 68 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 124
>gb|CW184313.1|CW184313 104_600_11165084_148_36687_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165084, DNA
sequence
Length = 718
Score = 58.0 bits (29), Expect = 9e-007
Identities = 86/105 (81%)
Strand = Plus / Minus
Query: 404 gagaccaacatcgatgccgcgacgaacgtgtccacctggattggcagctgctacctcacg 463
|||| |||| ||||||| ||||||| |||||||| |||||||| | | | | |||||
Sbjct: 706 gagagcaacgtcgatgctgcgacgactgtgtccacgtggattgggacttcattcttcacg 647
Query: 464 ccgctcatcagcgccttcttggccgacacgtactggggaagatac 508
||||||||| | || |||||||||||||| | ||||||| |||||
Sbjct: 646 ccgctcatcggagcgttcttggccgacacattctggggacgatac 602
>gb|CW315696.1|CW315696 104_806_11472500_116_35824_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472500, DNA
sequence
Length = 553
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
||||| ||||| |||||||||| |||| |||||| ||||||||||| |||||||||
Sbjct: 390 gatattaacaaccagcgtgctccgaagcggagcacggggaactggagggcatgcttc 446
Score = 48.1 bits (24), Expect = 9e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 178 agatgaggagaggccactgattca 201
||||||||||||||||||||||||
Sbjct: 141 agatgaggagaggccactgattca 164
>gb|CW364276.1|CW364276 fsbb001f036e02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036e02, DNA
sequence
Length = 656
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 305 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 361
>gb|CW364277.1|CW364277 fsbb001f036e02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036e02, DNA
sequence
Length = 674
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 642 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 586
>gb|CW438144.1|CW438144 fsbb001f155j19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f155j19, DNA
sequence
Length = 690
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 260 gatatcaacaagcagcgtgctctgaagaagagcaccgggaactggagagcatgcttc 316
|||||||||||||||| |||||| ||| | ||||| ||||| ||||| |||||||||
Sbjct: 603 gatatcaacaagcagcctgctctcaagcacagcacagggaaatggagggcatgcttc 547
>gb|BZ351163.1|BZ351163 hv19d02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv19d02 5', DNA sequence
Length = 614
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/51 (90%), Gaps = 2/51 (3%)
Strand = Plus / Plus
Query: 75 gtgcttcggagaagtaggtgtccaaaagttgcttacagtggatccagatcc 125
||||||||||||||||||||||| |||||||||| ||||| ||| |||||
Sbjct: 316 gtgcttcggagaagtaggtgtcc--aagttgcttatagtggttccggatcc 364
Score = 48.1 bits (24), Expect = 9e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacct 207
||||||||||||||||||||||| || |||||
Sbjct: 407 gcagatgaggagaggccactgatccattacct 438
>gb|CF428787.1|CF428787 PH1_17_E09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_17_E09_A002 5', mRNA sequence
Length = 693
Score = 56.0 bits (28), Expect = 4e-006
Identities = 172/220 (78%)
Strand = Plus / Plus
Query: 283 gaagaagagcaccgggaactggagagcatgcttcatgattctgggtaccgagttcgccga 342
|||| ||||||| ||||| |||| |||||||||| | ||| | ||| | || ||||| ||
Sbjct: 164 gaagcagagcactgggaattggacagcatgcttctttattttaggtgctgaattcgctga 223
Query: 343 atgcctggcattttacgcgaccgcaaagaacctggtcacctacctcacggctgagcttgg 402
||| |||| || | ||| | | |||||||| ||||||| |||||||||| || ||
Sbjct: 224 atgtgtggccttcttcgcaatctcaaagaacttggtcacttacctcacgggtgttctcca 283
Query: 403 tgagaccaacatcgatgccgcgacgaacgtgtccacctggattggcagctgctacctcac 462
|||| |||| ||||||| || |||| ||||||||||||||||| | | | | ||||
Sbjct: 284 cgagagcaacgtcgatgctgcaacgactgtgtccacctggattgggaccgcattcttcac 343
Query: 463 gccgctcatcagcgccttcttggccgacacgtactgggga 502
|||||||||| | || |||||||| ||||| | |||||||
Sbjct: 344 gccgctcatcggagcgttcttggctgacacattctgggga 383
>gb|CL190791.1|CL190791 104_409_10906327_114_32488_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906327, DNA
sequence
Length = 782
Score = 54.0 bits (27), Expect = 1e-005
Identities = 114/143 (79%)
Strand = Plus / Minus
Query: 366 caaagaacctggtcacctacctcacggctgagcttggtgagaccaacatcgatgccgcga 425
|||||||| ||||||| |||||||||| || || |||| |||| ||||||| || |
Sbjct: 700 caaagaacttggtcacttacctcacgggtgttctccacgagagcaacgtcgatgctgcaa 641
Query: 426 cgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagcgccttcttgg 485
||| ||||||||||||||||| | | | | |||||||||||||| | || |||||||
Sbjct: 640 cgactgtgtccacctggattgggaccgcattcttcacgccgctcatcggagcgttcttgg 581
Query: 486 ccgacacgtactggggaagatac 508
| ||||| | ||||||| |||||
Sbjct: 580 ctgacacattctggggacgatac 558
>gb|CL190792.1|CL190792 104_409_10906327_116_32496_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906327, DNA
sequence
Length = 741
Score = 54.0 bits (27), Expect = 1e-005
Identities = 114/143 (79%)
Strand = Plus / Plus
Query: 366 caaagaacctggtcacctacctcacggctgagcttggtgagaccaacatcgatgccgcga 425
|||||||| ||||||| |||||||||| || || |||| |||| ||||||| || |
Sbjct: 443 caaagaacttggtcacttacctcacgggtgttctccacgagagcaacgtcgatgctgcaa 502
Query: 426 cgaacgtgtccacctggattggcagctgctacctcacgccgctcatcagcgccttcttgg 485
||| ||||||||||||||||| | | | | |||||||||||||| | || |||||||
Sbjct: 503 cgactgtgtccacctggattgggaccgcattcttcacgccgctcatcggagcgttcttgg 562
Query: 486 ccgacacgtactggggaagatac 508
| ||||| | ||||||| |||||
Sbjct: 563 ctgacacattctggggacgatac 585
>gb|CW062232.1|CW062232 104_307_10521225_5_30083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521225, DNA
sequence
Length = 511
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagg 218
||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 314 gcagatgaggagatgccactgattcattacctatctccagagg 356
>gb|CW388304.1|CW388304 fsbb001f073a03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073a03, DNA
sequence
Length = 495
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagg 218
||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 253 gcagatgaggagatgccactgattcattacctatctccagagg 295
>gb|CW479063.1|CW479063 fsbb001f237e21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f237e21, DNA
sequence
Length = 355
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 176 gcagatgaggagaggccactgattcagtacctggctccagagg 218
||||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 182 gcagatgaggagatgccactgattcattacctatctccagagg 224
>gb|CF761849.1|CF761849 DSAF1_82_F02.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_82_F02_A011 5', mRNA sequence
Length = 616
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 178 agatgaggagaggccactgattcagtacctggctccagaggatga 222
|||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 164 agatgaggagaggccactgattcatcacctgactacacaggatga 208
Score = 40.1 bits (20), Expect = 0.21
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 404 gagaccaacatcgatgccgcgacgaacgtgtccacctgga 443
|||| |||| ||||||| ||||| | ||||||||||||||
Sbjct: 384 gagagcaacgtcgatgctgcgacaaccgtgtccacctgga 423
>gb|CW416404.1|CW416404 fsbb001f116o23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f116o23, DNA
sequence
Length = 510
Score = 44.1 bits (22), Expect = 0.013
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 404 gagaccaacatcgatgccgcgacgaacgtgtccacctggattggca 449
|||| |||| ||||||| ||||| | ||||||||||||||| ||||
Sbjct: 5 gagagcaacgtcgatgctgcgacaaccgtgtccacctggatcggca 50
>gb|CD204277.1|CD204277 HS1_4_B08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_4_B08_A012 5', mRNA sequence
Length = 499
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 371 aacctggtcacctacctcacgg 392
||||||||||||||||||||||
Sbjct: 311 aacctggtcacctacctcacgg 332
>gb|CD212473.1|CD212473 HS1_5_G10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_5_G10_A012 5', mRNA sequence
Length = 621
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 371 aacctggtcacctacctcacgg 392
||||||||||||||||||||||
Sbjct: 314 aacctggtcacctacctcacgg 335
>gb|CN140978.1|CN140978 OX1_48_C08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_48_C08_A002 5', mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 371 aacctggtcacctacctcacgg 392
||||||||||||||||||||||
Sbjct: 304 aacctggtcacctacctcacgg 325
>gb|CD204879.1|CD204879 HS1_10_E12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_10_E12_A012 5', mRNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 372 acctggtcacctacctcacgg 392
|||||||||||||||||||||
Sbjct: 318 acctggtcacctacctcacgg 338
>gb|AC169374.1| Sorghum bicolor clone SB_BBc0019I06, WORKING DRAFT SEQUENCE, 3
unordered pieces
Length = 131627
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 130 aacaacattgctcaagctca 149
||||||||||||||||||||
Sbjct: 33207 aacaacattgctcaagctca 33226
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,762
Number of Sequences: 832831
Number of extensions: 127762
Number of successful extensions: 33956
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33875
Number of HSP's gapped (non-prelim): 81
length of query: 554
length of database: 491,359,669
effective HSP length: 19
effective length of query: 535
effective length of database: 475,535,880
effective search space: 254411695800
effective search space used: 254411695800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)