BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ1a04.yg.2.1
(386 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL162350.1|CL162350 104_354_10806346_116_31831_250 Sorgh... 56 2e-006
gb|CW062617.1|CW062617 104_308_10521441_1_30092 Sorghum met... 56 2e-006
gb|AW672234.1|AW672234 LG1_358_E02.b1_A002 Light Grown 1 (L... 56 2e-006
gb|AW922218.1|AW922218 DG1_17_C12.b1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|AW923085.1|AW923085 DG1_50_B11.b1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|AW923576.1|AW923576 DG1_56_E12.b1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|BE125376.1|BE125376 DG1_20_B09.b1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|BE125569.1|BE125569 DG1_28_B09.b1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|BE357487.1|BE357487 DG1_20_B09.b2_A002 Dark Grown 1 (DG1... 56 2e-006
gb|BE359658.1|BE359658 DG1_56_E12.b2_A002 Dark Grown 1 (DG1... 56 2e-006
gb|BE361155.1|BE361155 DG1_70_H03.b1_A002 Dark Grown 1 (DG1... 56 2e-006
gb|CB924895.1|CB924895 ABA1_28_G05.g1_A012 Abscisic acid-tr... 56 2e-006
gb|CB925974.1|CB925974 ABA1_30_D12.g1_A012 Abscisic acid-tr... 56 2e-006
gb|CB926213.1|CB926213 ABA1_6_E10.g1_A012 Abscisic acid-tre... 56 2e-006
gb|CD204569.1|CD204569 HS1_8_D11.g1_A012 Heat-shocked seedl... 56 2e-006
gb|CD205969.1|CD205969 HS1_19_C09.g1_A012 Heat-shocked seed... 56 2e-006
gb|CD208403.1|CD208403 HS1_37_A07.g1_A012 Heat-shocked seed... 56 2e-006
gb|CD209441.1|CD209441 HS1_42_D07.g1_A012 Heat-shocked seed... 56 2e-006
gb|CD210194.1|CD210194 HS1_57_F09.g1_A012 Heat-shocked seed... 56 2e-006
gb|CD213541.1|CD213541 HS1_41_D04.g1_A012 Heat-shocked seed... 56 2e-006
gb|CD214004.1|CD214004 HS1_69_A08.g1_A012 Heat-shocked seed... 56 2e-006
gb|CD230210.1|CD230210 SS1_41_F06.g1_A012 Salt-stressed see... 56 2e-006
gb|CD230393.1|CD230393 SS1_43_C12.g1_A012 Salt-stressed see... 56 2e-006
gb|CD230412.1|CD230412 SS1_43_H07.g1_A012 Salt-stressed see... 56 2e-006
gb|CD232462.1|CD232462 SS1_45_D11.g1_A012 Salt-stressed see... 56 2e-006
gb|CD232926.1|CD232926 SS1_10_A10.g1_A012 Salt-stressed see... 56 2e-006
gb|CD235437.1|CD235437 SS1_29_H09.g1_A012 Salt-stressed see... 56 2e-006
gb|CD235768.1|CD235768 SS1_37_A10.g1_A012 Salt-stressed see... 56 2e-006
gb|CD424123.1|CD424123 SA1_3_E10.g1_A002 Salicylic acid-tre... 56 2e-006
gb|CD426828.1|CD426828 SA1_25_F08.g1_A002 Salicylic acid-tr... 56 2e-006
gb|CD428431.1|CD428431 ETH1_31_E07.g1_A002 Ethylene-treated... 56 2e-006
gb|CD432578.1|CD432578 ETH1_30_D10.g1_A002 Ethylene-treated... 56 2e-006
gb|CD461514.1|CD461514 SA1_32_D07.g2_A002 Salicylic acid-tr... 56 2e-006
gb|CD462055.1|CD462055 SA1_36_E11.g1_A002 Salicylic acid-tr... 56 2e-006
gb|CD463453.1|CD463453 ETH1_44_H06.g1_A002 Ethylene-treated... 56 2e-006
gb|CF072744.1|CF072744 FE1_25_D11.g1_A002 Iron-deficient se... 56 2e-006
gb|CF430508.1|CF430508 PH1_28_H07.g1_A002 Phosphorous-defic... 56 2e-006
gb|CF433233.1|CF433233 NIT1_25_G09.g1_A002 Nitrogen-deficie... 56 2e-006
gb|CF433544.1|CF433544 NIT1_27_A12.g1_A002 Nitrogen-deficie... 56 2e-006
gb|CN124533.1|CN124533 RHOH1_5_A02.g1_A002 Acid- and alkali... 56 2e-006
gb|CN128187.1|CN128187 RHOH1_27_D08.g1_A002 Acid- and alkal... 56 2e-006
gb|CN132558.1|CN132558 OX1_6_H06.g1_A002 Oxidatively-stress... 56 2e-006
gb|CN132656.1|CN132656 OX1_7_A08.g1_A002 Oxidatively-stress... 56 2e-006
gb|CN132893.1|CN132893 OX1_8_H01.g1_A002 Oxidatively-stress... 56 2e-006
gb|CN134637.1|CN134637 OX1_27_C03.g1_A002 Oxidatively-stres... 56 2e-006
gb|CN135132.1|CN135132 OX1_30_F06.g1_A002 Oxidatively-stres... 56 2e-006
gb|CN135260.1|CN135260 OX1_31_D03.g1_A002 Oxidatively-stres... 56 2e-006
gb|CN137940.1|CN137940 OX1_60_F03.g1_A002 Oxidatively-stres... 56 2e-006
gb|CN138887.1|CN138887 OX1_14_E07.g1_A002 Oxidatively-stres... 56 2e-006
gb|CN142083.1|CN142083 WOUND1_3_F05.g1_A002 Wounded leaves ... 56 2e-006
gb|CN142090.1|CN142090 WOUND1_3_G01.g1_A002 Wounded leaves ... 56 2e-006
gb|CN143509.1|CN143509 WOUND1_16_E08.g1_A002 Wounded leaves... 56 2e-006
gb|CN143998.1|CN143998 WOUND1_19_D01.g1_A002 Wounded leaves... 56 2e-006
gb|CN144348.1|CN144348 WOUND1_21_D08.g1_A002 Wounded leaves... 56 2e-006
gb|CN144915.1|CN144915 WOUND1_25_E06.g1_A002 Wounded leaves... 56 2e-006
gb|CN145257.1|CN145257 WOUND1_27_F04.g1_A002 Wounded leaves... 56 2e-006
gb|CN145584.1|CN145584 WOUND1_33_H12.g1_A002 Wounded leaves... 56 2e-006
gb|CN145790.1|CN145790 WOUND1_35_F12.b1_A002 Wounded leaves... 56 2e-006
gb|CN145862.1|CN145862 WOUND1_35_F12.g1_A002 Wounded leaves... 56 2e-006
gb|CN145865.1|CN145865 WOUND1_35_G08.g1_A002 Wounded leaves... 56 2e-006
gb|CN145869.1|CN145869 WOUND1_35_G12.g1_A002 Wounded leaves... 56 2e-006
gb|CN145973.1|CN145973 WOUND1_36_C07.g1_A002 Wounded leaves... 56 2e-006
gb|CN146115.1|CN146115 WOUND1_37_E06.g1_A002 Wounded leaves... 56 2e-006
gb|CN146118.1|CN146118 WOUND1_37_E11.g1_A002 Wounded leaves... 56 2e-006
gb|CN146781.1|CN146781 WOUND1_43_E03.g1_A002 Wounded leaves... 56 2e-006
gb|CN146936.1|CN146936 WOUND1_44_H01.g1_A002 Wounded leaves... 56 2e-006
gb|CN148176.1|CN148176 WOUND1_54_D09.g1_A002 Wounded leaves... 56 2e-006
gb|CN148296.1|CN148296 WOUND1_55_A03.g1_A002 Wounded leaves... 56 2e-006
gb|CN148321.1|CN148321 WOUND1_55_D01.g1_A002 Wounded leaves... 56 2e-006
gb|CN148802.1|CN148802 WOUND1_58_H04.g1_A002 Wounded leaves... 56 2e-006
gb|CN148955.1|CN148955 WOUND1_59_G12.g1_A002 Wounded leaves... 56 2e-006
gb|CN149777.1|CN149777 WOUND1_64_G04.g1_A002 Wounded leaves... 56 2e-006
gb|CN150486.1|CN150486 WOUND1_69_B07.g1_A002 Wounded leaves... 56 2e-006
gb|CN150994.1|CN150994 WOUND1_72_F10.g1_A002 Wounded leaves... 56 2e-006
gb|CN151110.1|CN151110 WOUND1_73_B01.g1_A002 Wounded leaves... 56 2e-006
gb|CN151760.1|CN151760 WOUND1_77_A09.g1_A002 Wounded leaves... 56 2e-006
gb|CN152357.1|CN152357 WOUND1_81_C05.g1_A002 Wounded leaves... 56 2e-006
gb|CN152542.1|CN152542 WOUND1_82_E09.g1_A002 Wounded leaves... 56 2e-006
gb|CX613183.1|CX613183 GABR1_6_F02.g1_A002 GA- or brassinol... 56 2e-006
gb|CX614077.1|CX614077 GABR1_11_H11.g1_A002 GA- or brassino... 56 2e-006
gb|CX614360.1|CX614360 GABR1_13_C10.g1_A002 GA- or brassino... 56 2e-006
gb|CX614535.1|CX614535 GABR1_14_E02.g1_A002 GA- or brassino... 56 2e-006
gb|CX614722.1|CX614722 GABR1_15_H05.g1_A002 GA- or brassino... 56 2e-006
gb|CX614863.1|CX614863 GABR1_16_G01.g1_A002 GA- or brassino... 56 2e-006
gb|CX615335.1|CX615335 GABR1_19_B10.g1_A002 GA- or brassino... 56 2e-006
gb|CX615910.1|CX615910 GABR1_24_B10.g1_A002 GA- or brassino... 56 2e-006
gb|CX616227.1|CX616227 GABR1_26_D10.g1_A002 GA- or brassino... 56 2e-006
gb|CX616382.1|CX616382 GABR1_27_C10.g1_A002 GA- or brassino... 56 2e-006
gb|CX616763.1|CX616763 GABR1_29_F11.g1_A002 GA- or brassino... 56 2e-006
gb|CX617395.1|CX617395 GABR1_33_B07.g1_A002 GA- or brassino... 56 2e-006
gb|CX617611.1|CX617611 GABR1_34_E12.g1_A002 GA- or brassino... 56 2e-006
gb|CX617777.1|CX617777 GABR1_35_E09.g1_A002 GA- or brassino... 56 2e-006
gb|CX619626.1|CX619626 GABR1_46_F01.g1_A002 GA- or brassino... 56 2e-006
gb|CX621016.1|CX621016 GABR1_55_B01.g1_A002 GA- or brassino... 56 2e-006
gb|CX621046.1|CX621046 GABR1_55_D10.g1_A002 GA- or brassino... 56 2e-006
gb|CX621570.1|CX621570 GABR1_58_H03.g1_A002 GA- or brassino... 56 2e-006
gb|CX622005.1|CX622005 GABR1_61_A11.g2_A002 GA- or brassino... 56 2e-006
gb|CX622012.1|CX622012 GABR1_61_B07.g2_A002 GA- or brassino... 56 2e-006
gb|CX622882.1|CX622882 GABR1_66_B07.g1_A002 GA- or brassino... 56 2e-006
gb|CX623242.1|CX623242 GABR1_68_B11.g1_A002 GA- or brassino... 56 2e-006
gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nucle... 56 2e-006
gb|AF253508.1|AF253508 Sorghum bicolor cyanogenic beta-gluc... 56 2e-006
gb|CB924912.1|CB924912 ABA1_28_G12.g1_A012 Abscisic acid-tr... 54 1e-005
gb|CD205233.1|CD205233 HS1_12_A10.g1_A012 Heat-shocked seed... 54 1e-005
gb|CN144481.1|CN144481 WOUND1_22_D03.g1_A002 Wounded leaves... 54 1e-005
gb|CD233883.1|CD233883 SS1_4_B05.g1_A012 Salt-stressed seed... 52 4e-005
gb|CN146182.1|CN146182 WOUND1_38_A08.g1_A002 Wounded leaves... 50 1e-004
gb|CN149263.1|CN149263 WOUND1_61_E05.g1_A002 Wounded leaves... 50 1e-004
gb|CX618930.1|CX618930 GABR1_42_B07.g1_A002 GA- or brassino... 50 1e-004
gb|CW177489.1|CW177489 104_590_11159053_148_36591_049 Sorgh... 48 6e-004
gb|CW181624.1|CW181624 104_596_11163611_116_36647_036 Sorgh... 48 6e-004
gb|CW181625.1|CW181625 104_596_11163611_148_36648_036 Sorgh... 48 6e-004
gb|CB924714.1|CB924714 ABA1_1_C01.g1_A012 Abscisic acid-tre... 48 6e-004
gb|CD210483.1|CD210483 HS1_51_F10.g1_A012 Heat-shocked seed... 48 6e-004
gb|CN146020.1|CN146020 WOUND1_36_H04.g1_A002 Wounded leaves... 48 6e-004
gb|CN147980.1|CN147980 WOUND1_53_A07.g1_A002 Wounded leaves... 48 6e-004
gb|CN148000.1|CN148000 WOUND1_53_C12.g1_A002 Wounded leaves... 48 6e-004
gb|CD211500.1|CD211500 HS1_60_H01.g1_A012 Heat-shocked seed... 44 0.009
gb|CD212659.1|CD212659 HS1_6_E05.g1_A012 Heat-shocked seedl... 44 0.009
gb|CD206995.1|CD206995 HS1_26_H04.g1_A012 Heat-shocked seed... 42 0.036
gb|CD213086.1|CD213086 HS1_28_A05.g1_A012 Heat-shocked seed... 42 0.036
>gb|CL162350.1|CL162350 104_354_10806346_116_31831_250 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806346, DNA
sequence
Length = 637
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 45 ggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 186 ggcatagaaccatatataacaattttccactgggacacgcctcaa 142
>gb|CW062617.1|CW062617 104_308_10521441_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521441, DNA
sequence
Length = 668
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 45 ggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 251 ggcatagaaccatatataacaattttccactgggacacgcctcaa 295
>gb|AW672234.1|AW672234 LG1_358_E02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 664
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 587 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 638
>gb|AW922218.1|AW922218 DG1_17_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 170 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 221
>gb|AW923085.1|AW923085 DG1_50_B11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 170 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 221
>gb|AW923576.1|AW923576 DG1_56_E12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 460
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 242 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 293
>gb|BE125376.1|BE125376 DG1_20_B09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 234 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 285
>gb|BE125569.1|BE125569 DG1_28_B09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 388
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 234 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 285
>gb|BE357487.1|BE357487 DG1_20_B09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 234 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 285
>gb|BE359658.1|BE359658 DG1_56_E12.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 600
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 242 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 293
>gb|BE361155.1|BE361155 DG1_70_H03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 581
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 149 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 200
>gb|CB924895.1|CB924895 ABA1_28_G05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_28_G05_A012 5', mRNA sequence
Length = 668
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 590 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 641
>gb|CB925974.1|CB925974 ABA1_30_D12.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_30_D12_A012 5', mRNA sequence
Length = 673
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 593 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 644
>gb|CB926213.1|CB926213 ABA1_6_E10.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_6_E10_A012 5', mRNA sequence
Length = 664
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 585 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 636
>gb|CD204569.1|CD204569 HS1_8_D11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_8_D11_A012 5', mRNA sequence
Length = 726
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 587 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 638
>gb|CD205969.1|CD205969 HS1_19_C09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_C09_A012 5', mRNA sequence
Length = 670
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 576 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 627
>gb|CD208403.1|CD208403 HS1_37_A07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_37_A07_A012 5', mRNA sequence
Length = 654
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 590 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 641
>gb|CD209441.1|CD209441 HS1_42_D07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_42_D07_A012 5', mRNA sequence
Length = 673
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 593 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 644
>gb|CD210194.1|CD210194 HS1_57_F09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_F09_A012 5', mRNA sequence
Length = 705
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 601 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 652
>gb|CD213541.1|CD213541 HS1_41_D04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_41_D04_A012 5', mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 593 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 644
>gb|CD214004.1|CD214004 HS1_69_A08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_69_A08_A012 5', mRNA sequence
Length = 644
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 588 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 639
>gb|CD230210.1|CD230210 SS1_41_F06.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_41_F06_A012 5', mRNA sequence
Length = 713
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 582 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 633
>gb|CD230393.1|CD230393 SS1_43_C12.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_43_C12_A012 5', mRNA sequence
Length = 692
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 590 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 641
>gb|CD230412.1|CD230412 SS1_43_H07.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_43_H07_A012 5', mRNA sequence
Length = 558
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 464 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 515
>gb|CD232462.1|CD232462 SS1_45_D11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_D11_A012 5', mRNA sequence
Length = 710
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 588 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 639
>gb|CD232926.1|CD232926 SS1_10_A10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_10_A10_A012 5', mRNA sequence
Length = 632
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 34 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 85
>gb|CD235437.1|CD235437 SS1_29_H09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_29_H09_A012 5', mRNA sequence
Length = 660
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 591 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 642
>gb|CD235768.1|CD235768 SS1_37_A10.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_A10_A012 5', mRNA sequence
Length = 669
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 556 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 607
>gb|CD424123.1|CD424123 SA1_3_E10.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_E10_A002 5', mRNA sequence
Length = 662
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 590 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 641
>gb|CD426828.1|CD426828 SA1_25_F08.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_25_F08_A002 5', mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 592 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 643
>gb|CD428431.1|CD428431 ETH1_31_E07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_E07_A002 5', mRNA sequence
Length = 733
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 594 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 645
>gb|CD432578.1|CD432578 ETH1_30_D10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_30_D10_A002 5', mRNA sequence
Length = 769
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 169 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 220
>gb|CD461514.1|CD461514 SA1_32_D07.g2_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_32_D07_A002 5', mRNA sequence
Length = 660
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 603 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 654
>gb|CD462055.1|CD462055 SA1_36_E11.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_36_E11_A002 5', mRNA sequence
Length = 798
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 598 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 649
>gb|CD463453.1|CD463453 ETH1_44_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_H06_A002 5', mRNA sequence
Length = 784
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 594 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 645
>gb|CF072744.1|CF072744 FE1_25_D11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_D11_A002 5', mRNA sequence
Length = 652
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 583 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 634
>gb|CF430508.1|CF430508 PH1_28_H07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_28_H07_A002 5', mRNA sequence
Length = 780
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 578 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 629
>gb|CF433233.1|CF433233 NIT1_25_G09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_G09_A002 5', mRNA sequence
Length = 796
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 586 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 637
>gb|CF433544.1|CF433544 NIT1_27_A12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_27_A12_A002 5', mRNA sequence
Length = 717
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 581 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 632
>gb|CN124533.1|CN124533 RHOH1_5_A02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_5_A02_A002 5', mRNA sequence
Length = 737
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 236 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 287
>gb|CN128187.1|CN128187 RHOH1_27_D08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_D08_A002 5', mRNA sequence
Length = 716
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 241 agagaacggcatagagccatatataacaattttccactgggacacgcctcaa 292
>gb|CN132558.1|CN132558 OX1_6_H06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_6_H06_A002 5', mRNA sequence
Length = 823
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 601 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 652
>gb|CN132656.1|CN132656 OX1_7_A08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_A08_A002 5', mRNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 590 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 641
>gb|CN132893.1|CN132893 OX1_8_H01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_H01_A002 5', mRNA sequence
Length = 792
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 591 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 642
>gb|CN134637.1|CN134637 OX1_27_C03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_27_C03_A002 5', mRNA sequence
Length = 818
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 582 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 633
>gb|CN135132.1|CN135132 OX1_30_F06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_30_F06_A002 5', mRNA sequence
Length = 737
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 600 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 651
>gb|CN135260.1|CN135260 OX1_31_D03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_31_D03_A002 5', mRNA sequence
Length = 651
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 583 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 634
>gb|CN137940.1|CN137940 OX1_60_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_60_F03_A002 5', mRNA sequence
Length = 820
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 569 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 620
>gb|CN138887.1|CN138887 OX1_14_E07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_E07_A002 5', mRNA sequence
Length = 782
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 564 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 615
>gb|CN142083.1|CN142083 WOUND1_3_F05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_F05_A002 5', mRNA sequence
Length = 807
Score = 56.0 bits (28), Expect = 2e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 38 aganaacggcatagaaccatatnnnacacttttccactgggacacacctcaa 89
||| ||||||||||| |||||| ||| |||||||||||||||| ||||||
Sbjct: 613 agacaacggcatagagccatatgtaacaattttccactgggacacgcctcaa 664
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,998
Number of Sequences: 832831
Number of extensions: 21998
Number of successful extensions: 5334
Number of sequences better than 0.5: 121
Number of HSP's better than 0.5 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5127
Number of HSP's gapped (non-prelim): 207
length of query: 386
length of database: 491,359,669
effective HSP length: 19
effective length of query: 367
effective length of database: 475,535,880
effective search space: 174521667960
effective search space used: 174521667960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)