BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAI15h08.yg.2.1
(557 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW033103.1|CW033103 104_262_10501765_115_30362 Sorghum m... 272 3e-071
gb|CL172808.1|CL172808 104_375_10890425_148_31796_329 Sorgh... 256 2e-066
gb|CW159888.1|CW159888 104_566_11149595_116_36421_044 Sorgh... 80 2e-013
gb|CW318804.1|CW318804 104_811_11474148_116_35881_046 Sorgh... 78 1e-012
gb|CW034430.1|CW034430 104_264_10502543_115_30380 Sorghum m... 74 2e-011
gb|BI245888.1|BI245888 IP1_64_G09.b1_A002 Immature pannicle... 56 4e-006
gb|CW110661.1|CW110661 104_483_11103841_148_34521_005 Sorgh... 40 0.21
>gb|CW033103.1|CW033103 104_262_10501765_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501765, DNA
sequence
Length = 630
Score = 272 bits (137), Expect = 3e-071
Identities = 161/169 (95%)
Strand = Plus / Plus
Query: 300 cctgcggtggcagcaacacgatcctcctccttggcatcagaaggaagatccgcatgatag 359
||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 169 cctgcagtggcagcaacacgttcctcctccttggcatcaggaggaagatccacatgatag 228
Query: 360 acaggaaaagtcaatacgacacccaggtgattcgacatgagccggaatggtcgagtgaga 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 229 acaggaaaagtcaatacgacacccaggtgattcgacatgagccggaatggtctcgtaaga 288
Query: 420 actgccttccccgatgctcttgacctcaaaatattctcacggtcctcct 468
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 289 actgccttccccgatgctcttgacctcaaaatgttctcacggtcctcct 337
Score = 79.8 bits (40), Expect = 2e-013
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 466 cctcgccnnacatcatgtcgagcccctcgatgtannngacggtctcctgcgagtatacaa 525
||||||| ||||||||||||||||||| ||||| |||||||||||||||||| || |
Sbjct: 436 cctcgccggacatcatgtcgagcccctcaatgtaggagacggtctcctgcgagtagacga 495
Query: 526 cgggcgcgtac 536
| |||||||||
Sbjct: 496 ccggcgcgtac 506
>gb|CL172808.1|CL172808 104_375_10890425_148_31796_329 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890425, DNA
sequence
Length = 581
Score = 256 bits (129), Expect = 2e-066
Identities = 150/157 (95%)
Strand = Plus / Minus
Query: 144 gaggggttgccaagaggaacttctgatccatacatgacaagagggttcgaaatgtttgtg 203
|||||| |||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||
Sbjct: 581 gaggggatgccaagaggaacttccgatccctacatgacaagagggtttgaactgtttgtg 522
Query: 204 acatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaattttcc 263
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 521 acatcataaacatttaccaccaattcctgattgccagcaagctgcctcaacaaattttcc 462
Query: 264 actaatgattctacatcaaatgctcccccaaggtatc 300
|||||||||||||||||||||| ||||||||||||||
Sbjct: 461 actaatgattctacatcaaatgatcccccaaggtatc 425
>gb|CW159888.1|CW159888 104_566_11149595_116_36421_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149595, DNA
sequence
Length = 620
Score = 79.8 bits (40), Expect = 2e-013
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 466 cctcgccnnacatcatgtcgagcccctcgatgtannngacggtctcctgcgagtatacaa 525
||||||| ||||||||||||||||||| ||||| |||||||||||||||||| || |
Sbjct: 556 cctcgccggacatcatgtcgagcccctcaatgtaggagacggtctcctgcgagtagacga 497
Query: 526 cgggcgcgtac 536
| |||||||||
Sbjct: 496 ccggcgcgtac 486
>gb|CW318804.1|CW318804 104_811_11474148_116_35881_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474148, DNA
sequence
Length = 597
Score = 77.8 bits (39), Expect = 1e-012
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 467 ctcgccnnacatcatgtcgagcccctcgatgtannngacggtctcctgcgagtatacaac 526
|||||| ||||||||||||||||||| ||||| |||||||||||||||||| || ||
Sbjct: 1 ctcgccggacatcatgtcgagcccctcaatgtaggagacggtctcctgcgagtagacgac 60
Query: 527 gggcgcgtac 536
|||||||||
Sbjct: 61 cggcgcgtac 70
>gb|CW034430.1|CW034430 104_264_10502543_115_30380 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502543, DNA
sequence
Length = 686
Score = 73.8 bits (37), Expect = 2e-011
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 475 acatcatgtcgagcccctcgatgtannngacggtctcctgcgagtatacaacgggcgcgt 534
||||||||||||||||||| ||||| |||||||||||||||||| || || |||||||
Sbjct: 686 acatcatgtcgagcccctcaatgtaggagacggtctcctgcgagtagacgaccggcgcgt 627
Query: 535 ac 536
||
Sbjct: 626 ac 625
>gb|BI245888.1|BI245888 IP1_64_G09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 448
Score = 56.0 bits (28), Expect = 4e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 198 tttgtgacatcataaacatttaccaccaattcctgattgccagctagctgcctcaacaaa 257
|||||||||||||| ||||| ||||| | |||||||||||||| || | || | ||||
Sbjct: 344 tttgtgacatcatagacattaaccacaatatcctgattgccagcaagtttgcttagcaaa 285
Query: 258 ttttccactaatgattctacatcaaatgctcccccaaggtatcc 301
|||||||| | ||| || ||||| ||| |||| ||||| |||||
Sbjct: 284 ttttccacaagtgactccacatcgaatcctccaccaagatatcc 241
>gb|CW110661.1|CW110661 104_483_11103841_148_34521_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103841, DNA
sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 95 atgctttctgaatggatcac 114
||||||||||||||||||||
Sbjct: 613 atgctttctgaatggatcac 594
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,706
Number of Sequences: 832831
Number of extensions: 133706
Number of successful extensions: 35813
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35804
Number of HSP's gapped (non-prelim): 8
length of query: 557
length of database: 491,359,669
effective HSP length: 19
effective length of query: 538
effective length of database: 475,535,880
effective search space: 255838303440
effective search space used: 255838303440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)