BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN133913.1|CN133913 OX1_19_D01.b1_A002 Oxidatively-stres... 678 0.0
gb|CF072232.1|CF072232 FE1_6_H10.b1_A002 Iron-deficient see... 337 6e-091
gb|CD427202.1|CD427202 SA1_18_E02.b1_A002 Salicylic acid-tr... 307 5e-082
gb|CW392111.1|CW392111 fsbb001f078j07k0 Sorghum methylation... 276 2e-072
gb|CW275167.1|CW275167 104_748_11404818_148_35383_073 Sorgh... 246 2e-063
gb|CW429242.1|CW429242 fsbb001f142g06k0 Sorghum methylation... 246 2e-063
gb|CW122925.1|CW122925 104_502_11110938_116_34690_079 Sorgh... 244 7e-063
gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassino... 176 1e-042
gb|BI351197.1|BI351197 IP1_71_B10.g1_A002 Immature pannicle... 159 3e-037
gb|CW391719.1|CW391719 fsbb001f078a05k0 Sorghum methylation... 123 2e-026
gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation... 86 4e-015
gb|CW122926.1|CW122926 104_502_11110938_148_34686_079 Sorgh... 82 6e-014
gb|CW429241.1|CW429241 fsbb001f142g06f0 Sorghum methylation... 82 6e-014
gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum m... 76 4e-012
gb|CW101220.1|CW101220 104_468_11004522_148_34395_065 Sorgh... 62 5e-008
gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2... 62 5e-008
gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-tre... 62 5e-008
gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1... 54 1e-005
gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sor... 54 1e-005
gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) So... 54 1e-005
gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 ... 54 1e-005
gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed see... 54 1e-005
gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-tre... 54 1e-005
gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 ... 52 5e-005
gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorgh... 46 0.003
gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorgh... 46 0.003
gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated... 46 0.003
>gb|CN133913.1|CN133913 OX1_19_D01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_19_D01_A002 3', mRNA sequence
Length = 715
Score = 678 bits (342), Expect = 0.0
Identities = 432/462 (93%)
Strand = Plus / Plus
Query: 52 gaaaggaacagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaat 111
||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 1 gaaaggaacagcgacatggttgagatggcaagttgtgccccactctttgtaaatgacaat 60
Query: 112 gaccaaaggtggaacccagatgctatagtctttaactcatggcagcactatggatgtcca 171
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 61 gatcaaaggtggaacccagatgctattgtctttaattcatggcagcactatggatgtcca 120
Query: 172 aattactggatgctgcactttttcaaagattcaagcagcgccacacttcatccgtccact 231
||||||||||| || ||||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 121 aattactggattctacacttcttcaaagattcaagtggcgctgcacttcatccgtccact 180
Query: 232 attcaactaccgaactacgaccaactggtcacatctgctatcacttggaataacccacat 291
||||||||||| ||||| || ||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 181 attcaactaccaaactatgatcaattggtcacatctgctatcacgtggaataatccacat 240
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttggaagcaaagctgttagtctg 351
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 gatgggaacacttacctgaaaataaaggttgtaaattttggaagcaaagctgttaatctg 300
Query: 352 aatatatctgtaactgggttggaaactgatattcagacatttggatccataaagacggtt 411
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 301 aatatatctgtaactgggttggaagctgatattcagacatttggatccttaaagacggtt 360
Query: 412 ctcacgtcgggttggctgcgggatgagaactcctttcaacagcccgacaaggtggtgccg 471
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 361 ctcacgtcaggttggctacgggatgagaactccttccaacagcccgacaaggtggttccg 420
Query: 472 gcggcaagtccaataaccaacgcgggcaagcaaatgggtgtt 513
||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 421 gcggcgagtccaataaccaacgcgggcaagcagatgggtgtt 462
>gb|CF072232.1|CF072232 FE1_6_H10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_6_H10_A002 3', mRNA sequence
Length = 427
Score = 337 bits (170), Expect = 6e-091
Identities = 197/206 (95%)
Strand = Plus / Plus
Query: 308 tgaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactg 367
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 tgaaaataaaggttgtaaattttggaagcaaagctgttaatctgaatatatctgtaactg 63
Query: 368 ggttggaaactgatattcagacatttggatccataaagacggttctcacgtcgggttggc 427
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 64 ggttggaagctgatattcagacatttggatccttaaagacggttctcacgtcaggttggc 123
Query: 428 tgcgggatgagaactcctttcaacagcccgacaaggtggtgccggcggcaagtccaataa 487
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct: 124 tacgggatgagaactccttccaacagcccgacaaggtggttccggcggcgagtccaataa 183
Query: 488 ccaacgcgggcaagcaaatgggtgtt 513
|||||||||||||||| |||||||||
Sbjct: 184 ccaacgcgggcaagcagatgggtgtt 209
>gb|CD427202.1|CD427202 SA1_18_E02.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_18_E02_A002 3', mRNA sequence
Length = 485
Score = 307 bits (155), Expect = 5e-082
Identities = 196/207 (94%), Gaps = 2/207 (0%)
Strand = Plus / Plus
Query: 309 gaaaataaaggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgg 368
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gaaaataaaggttgtaaattttggaagcaaagctgttaatctgaatatatctgtaactgg 60
Query: 369 gttggaaactgatattcagacatttggatccataaagacggttctcacgtcgggttggct 428
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 61 gttggaagctgatattcagacatttggatccttaaagacggttctcacgtcaggttggct 120
Query: 429 gc-gggatgagaactcctttcaac-agcccgacaaggtggtgccggcggcaagtccaata 486
| |||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||
Sbjct: 121 acggggatgagaactccttccaacaagcccgacaaggtggttccggcggcgagtccaata 180
Query: 487 accaacgcgggcaagcaaatgggtgtt 513
||||||||||||||||| |||||||||
Sbjct: 181 accaacgcgggcaagcagatgggtgtt 207
>gb|CW392111.1|CW392111 fsbb001f078j07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078j07, DNA
sequence
Length = 802
Score = 276 bits (139), Expect = 2e-072
Identities = 187/203 (92%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 511 aggtggaacccagatgctattgtctttaattcatggcagcactatggatgtccaaattac 452
Query: 178 tggatgctgcactttttcaaagattcaagcagcgccacacttcatccgtccactattcaa 237
||||| || ||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 451 tggattctacacttcttcaaagattcaagtggcgctgcacttcatccgtccactattcaa 392
Query: 238 ctaccgaactacgaccaactggtcacatctgctatcacttggaataacccacatgatggg 297
||||| ||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 391 ctaccaaactatgatcaattggtcacatctgctatcacgtggaataatccacatgatggg 332
Query: 298 aacacttacatgaaaataaaggt 320
||||||||| |||||||||||||
Sbjct: 331 aacacttacctgaaaataaaggt 309
Score = 246 bits (124), Expect = 2e-063
Identities = 142/148 (95%)
Strand = Plus / Minus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 229 aggttgtaaattttggaagcaaagctgttaatctgaatatatctgtaactgggttggaag 170
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct: 169 ctgatattcagacatttggatccttaaagacggttctcacgtcaggttggctacgggatg 110
Query: 437 agaactcctttcaacagcccgacaaggt 464
|||||||||| |||||||||||||||||
Sbjct: 109 agaactccttccaacagcccgacaaggt 82
Score = 91.7 bits (46), Expect = 6e-017
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 13 atagctgctttagctgaagctgcatttctcattggattagaaaggaacag 62
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 802 atagctgctttagctgaagctgcatttctcattggattagaaagaaacag 753
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaag 119
||||||| |||||||||||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct: 661 cagcgacatggttgagatggcaagttgtgccccactctttgtaaatgacaatgatcaaag 602
Query: 120 gt 121
||
Sbjct: 601 gt 600
>gb|CW275167.1|CW275167 104_748_11404818_148_35383_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404818, DNA
sequence
Length = 650
Score = 246 bits (124), Expect = 2e-063
Identities = 142/148 (95%)
Strand = Plus / Plus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 aggttgtaaattttggaagcaaagctgttaatctgaatatatctgtaactgggttggaag 325
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct: 326 ctgatattcagacatttggatccttaaagacggttctcacgtcaggttggctacgggatg 385
Query: 437 agaactcctttcaacagcccgacaaggt 464
|||||||||| |||||||||||||||||
Sbjct: 386 agaactccttccaacagcccgacaaggt 413
Score = 242 bits (122), Expect = 3e-062
Identities = 167/182 (91%)
Strand = Plus / Plus
Query: 139 gtctttaactcatggcagcactatggatgtccaaattactggatgctgcactttttcaaa 198
|||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 5 gtctttaattcatggcagcactatggatgtccaaattactggattctacacttcttcaaa 64
Query: 199 gattcaagcagcgccacacttcatccgtccactattcaactaccgaactacgaccaactg 258
|||||||| |||| |||||||||||||||||||||||||||| ||||| || ||| ||
Sbjct: 65 gattcaagtggcgctgcacttcatccgtccactattcaactaccaaactatgatcaattg 124
Query: 259 gtcacatctgctatcacttggaataacccacatgatgggaacacttacatgaaaataaag 318
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 125 gtcacatctgctatcacgtggaataatccacatgatgggaacacttacctgaaaataaag 184
Query: 319 gt 320
||
Sbjct: 185 gt 186
Score = 81.8 bits (41), Expect = 6e-014
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgtt 513
||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 527 aggtggttccggcggcgagtccaataaccaacgcgggcaagcagatgggtgtt 579
>gb|CW429242.1|CW429242 fsbb001f142g06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142g06, DNA
sequence
Length = 772
Score = 246 bits (124), Expect = 2e-063
Identities = 142/148 (95%)
Strand = Plus / Plus
Query: 317 aggttgtaaattttggaagcaaagctgttagtctgaatatatctgtaactgggttggaaa 376
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 75 aggttgtaaattttggaagcaaagctgttaatctgaatatatctgtaactgggttggaag 134
Query: 377 ctgatattcagacatttggatccataaagacggttctcacgtcgggttggctgcgggatg 436
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct: 135 ctgatattcagacatttggatccttaaagacggttctcacgtcaggttggctacgggatg 194
Query: 437 agaactcctttcaacagcccgacaaggt 464
|||||||||| |||||||||||||||||
Sbjct: 195 agaactccttccaacagcccgacaaggt 222
Score = 81.8 bits (41), Expect = 6e-014
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgtt 513
||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 336 aggtggttccggcggcgagtccaataaccaacgcgggcaagcagatgggtgtt 388
>gb|CW122925.1|CW122925 104_502_11110938_116_34690_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110938, DNA
sequence
Length = 637
Score = 244 bits (123), Expect = 7e-063
Identities = 177/195 (90%)
Strand = Plus / Plus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 420 aggtggaacccagatgctattgtctttaattcatggcagcactatggatgtccaaattac 479
Query: 178 tggatgctgcactttttcaaagattcaagcagcgccacacttcatccgtccactattcaa 237
||||| || ||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 480 tggattctacacttcttcaaagattcaagtggcgctgcacttcatccgtccactattcaa 539
Query: 238 ctaccgaactacgaccaactggtcacatctgctatcacttggaataacccacatgatggg 297
||||| ||||| || ||| ||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 540 ctacccaactatgatcaattggtcacatctgctatcacgtggaaatatccacatgatggg 599
Query: 298 aacacttacatgaaa 312
||||||||| |||||
Sbjct: 600 aacacttacctgaaa 614
Score = 123 bits (62), Expect = 2e-026
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 176
Query: 61 ag 62
||
Sbjct: 177 ag 178
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaag 119
||||||| |||||||||||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct: 270 cagcgacatggttgagatggcaagttgtgccccactctttgtaaatgacaatgatcaaag 329
Query: 120 gt 121
||
Sbjct: 330 gt 331
>gb|CX622684.1|CX622684 GABR1_65_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_H12_A002 3', mRNA sequence
Length = 802
Score = 176 bits (89), Expect = 1e-042
Identities = 170/197 (86%)
Strand = Plus / Plus
Query: 28 gaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaagttgt 87
||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct: 75 gaagctgcatttctcattggattggaaaggaacagtgatgtggttgagatggcaagctgt 134
Query: 88 gctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtctttaac 147
|| || || ||||||| |||||||| | ||||||| ||||||||| || ||||| |||
Sbjct: 135 gcacccctttttgtaaatgacaatgatcgcaggtggagcccagatgccatcgtcttcaac 194
Query: 148 tcatggcagcactatggatgtccaaattactggatgctgcactttttcaaagattcaagc 207
||||||||||||||||||||||| || || |||||||| ||||| ||||| || || ||
Sbjct: 195 tcatggcagcactatggatgtcccaactattggatgctacacttcttcaaggaatctagt 254
Query: 208 agcgccacacttcatcc 224
||||||| ||||||||
Sbjct: 255 ggcgccacccttcatcc 271
>gb|BI351197.1|BI351197 IP1_71_B10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 379
Score = 159 bits (80), Expect = 3e-037
Identities = 98/104 (94%)
Strand = Plus / Plus
Query: 410 ttctcacgtcgggttggctgcgggatgagaactcctttcaacagcccgacaaggtggtgc 469
|||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1 ttctcacgtcaggttggctacgggatgagaactccttccaacagcccgacaaggtggttc 60
Query: 470 cggcggcaagtccaataaccaacgcgggcaagcaaatgggtgtt 513
||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 61 cggcggcgagtccaataaccaacgcgggcaagcagatgggtgtt 104
>gb|CW391719.1|CW391719 fsbb001f078a05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078a05, DNA
sequence
Length = 476
Score = 123 bits (62), Expect = 2e-026
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 1 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cgaggaacactaatagctgctttagctgaagctgcatttctcattggattagaaaggaac 319
Query: 61 ag 62
||
Sbjct: 318 ag 317
Score = 115 bits (58), Expect = 4e-024
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 75 aggtggaacccagatgctattgtctttaattcatggcagcactatggatgtccaaattac 16
Query: 178 tggatgctgcactt 191
||||| || |||||
Sbjct: 15 tggattctacactt 2
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 60 cagcgacgtggttgagatggcaagttgtgctccactccttgtaaacgacaatgaccaaag 119
||||||| |||||||||||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct: 225 cagcgacatggttgagatggcaagttgtgccccactctttgtaaatgacaatgatcaaag 166
Query: 120 gt 121
||
Sbjct: 165 gt 164
>gb|CW499260.1|CW499260 fsbb001f293o20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293o20, DNA
sequence
Length = 731
Score = 85.7 bits (43), Expect = 4e-015
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||| ||||||||| || ||||| |||||||||||||||||||| ||||| || ||
Sbjct: 369 aggtggagcccagatgccatcgtcttcaactcatggcagcactatgggtgtcccaactat 428
Query: 178 tggatgctgcactttttcaaagattcaagcagcgccacacttcatcc 224
|||||||| ||||| ||||| || || || ||||||| ||||||||
Sbjct: 429 tggatgctacacttcttcaaggaatctagtggcgccacccttcatcc 475
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 67 gtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
||||||||||||||||| ||||| || || ||||||| ||||||||
Sbjct: 95 gtggttgagatggcaagctgtgcacccctttttgtaaatgacaatga 141
>gb|CW122926.1|CW122926 104_502_11110938_148_34686_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110938, DNA
sequence
Length = 593
Score = 81.8 bits (41), Expect = 6e-014
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgtt 513
||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 554 aggtggttccggcggcgagtccaataaccaacgcgggcaagcagatgggtgtt 502
>gb|CW429241.1|CW429241 fsbb001f142g06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142g06, DNA
sequence
Length = 849
Score = 81.8 bits (41), Expect = 6e-014
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 461 aggtggtgccggcggcaagtccaataaccaacgcgggcaagcaaatgggtgtt 513
||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 723 aggtggttccggcggcgagtccaataaccaacgcgggcaagcagatgggtgtt 671
>gb|CW040084.1|CW040084 104_273_10505880_114_30266 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505880, DNA
sequence
Length = 647
Score = 75.8 bits (38), Expect = 4e-012
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 127 ccagatgctatagtctttaactcatggcagcactatggatgtccaaattactggatgctg 186
|||||||| || ||||| |||||||||||||||||||| ||||| || || ||||||||
Sbjct: 1 ccagatgccatcgtcttcaactcatggcagcactatgggtgtcccaactattggatgcta 60
Query: 187 cactttttcaaagattcaagcagcgccacacttcatcc 224
||||| ||||| || || || ||||||| ||||||||
Sbjct: 61 cacttcttcaaggaatctagtggcgccacccttcatcc 98
>gb|CW101220.1|CW101220 104_468_11004522_148_34395_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004522, DNA
sequence
Length = 512
Score = 61.9 bits (31), Expect = 5e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 28 gaagctgcatttctcattggattagaaaggaacag 62
||||||||||||||||||||||| |||||||||||
Sbjct: 413 gaagctgcatttctcattggattggaaaggaacag 379
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 67 gtggttgagatggcaagttgtgctccactccttgtaaacgacaatga 113
||||||||||||||||| ||||| || || ||||||| ||||||||
Sbjct: 211 gtggttgagatggcaagctgtgcacccctttttgtaaatgacaatga 165
>gb|BG487902.1|BG487902 RHIZ2_60_G05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 61.9 bits (31), Expect = 5e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 108 caatgaccaaaggtggaacccagatgctatagtctttaactcatggcagca 158
||||||||||| |||||||||||| ||||| ||||| ||||| ||||||||
Sbjct: 7 caatgaccaaacgtggaacccagacgctatcgtcttcaactcctggcagca 57
>gb|CD424847.1|CD424847 SA1_9_H04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_H04_A002 3', mRNA sequence
Length = 664
Score = 61.9 bits (31), Expect = 5e-008
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
||||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 61 agatggcaagttgcgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 120
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 121 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 171
>gb|BE358411.1|BE358411 DG1_29_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 59 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 118
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 119 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 169
>gb|BF656911.1|BF656911 OV2_22_E11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 57 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 116
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 117 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 167
>gb|BG323188.1|BG323188 EM1_15_H09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 58 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 117
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 118 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 168
>gb|BG933148.1|BG933148 WS1_29_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 420 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 479
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 480 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 530
>gb|CD234501.1|CD234501 SS1_27_C11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_C11_A012 5', mRNA sequence
Length = 673
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 478 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 537
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 538 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 588
>gb|CD424232.1|CD424232 SA1_4_H05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_4_H05_A002 3', mRNA sequence
Length = 632
Score = 54.0 bits (27), Expect = 1e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 22 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 81
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| ||||| ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 82 ctattgtcttcaactcctggcaacattacggaactcctagttactggatgc 132
>gb|AW677945.1|AW677945 WS1_12_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 613
Score = 52.0 bits (26), Expect = 5e-005
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 506 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 565
Query: 134 ctatagtctttaactcatggca 155
|||| ||||| ||||| |||||
Sbjct: 566 ctattgtcttcaactcctggca 587
>gb|CL183896.1|CL183896 104_396_10898479_114_31923_319 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898479, DNA
sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.003
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||| |||||||| ||||| ||||| ||||| || || ||| ||| | ||||
Sbjct: 128 aggtggaacccggatgctattgtcttcaactcctggcaacattacggaactcctagttac 69
Query: 178 tggatgc 184
|||||||
Sbjct: 68 tggatgc 62
>gb|CW316446.1|CW316446 104_807_11472898_148_35847_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472898, DNA
sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.003
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 118 aggtggaacccagatgctatagtctttaactcatggcagcactatggatgtccaaattac 177
||||||||||| |||||||| ||||| ||||| ||||| || || ||| ||| | ||||
Sbjct: 414 aggtggaacccggatgctattgtcttcaactcctggcaacattacggaactcctagttac 355
Query: 178 tggatgc 184
|||||||
Sbjct: 354 tggatgc 348
>gb|CD463051.1|CD463051 ETH1_42_E06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_E06_A002 3', mRNA sequence
Length = 418
Score = 46.1 bits (23), Expect = 0.003
Identities = 89/111 (80%)
Strand = Plus / Plus
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||||| |||||||| | || || ||||||| |||| ||||||||| ||||
Sbjct: 22 agatggcaagttacgctccactattcgtgaataacaatgatcaaacgtggaacccggatg 81
Query: 134 ctatagtctttaactcatggcagcactatggatgtccaaattactggatgc 184
|||| || || ||||| ||||| || || ||| ||| | |||||||||||
Sbjct: 82 ctattgttttcaactcctggcaacattacggaactcctagttactggatgc 132
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,888
Number of Sequences: 832831
Number of extensions: 128888
Number of successful extensions: 34267
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34203
Number of HSP's gapped (non-prelim): 55
length of query: 526
length of database: 491,359,669
effective HSP length: 19
effective length of query: 507
effective length of database: 475,535,880
effective search space: 241096691160
effective search space used: 241096691160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)