BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI141124.1|BI141124 IP1_43_D11.b1_A002 Immature pannicle... 757 0.0
gb|BG047859.1|BG047859 OV1_28_F10.b1_A002 Ovary 1 (OV1) Sor... 720 0.0
gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (L... 656 0.0
gb|BF481389.1|BF481389 FM1_18_E02.b1_A003 Floral-Induced Me... 442 e-122
gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (L... 337 8e-091
gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation... 307 7e-082
gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stres... 307 7e-082
gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorg... 289 2e-076
gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1... 192 3e-047
gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle... 192 3e-047
gb|CL175875.1|CL175875 104_381_10892754_116_31765_354 Sorgh... 129 4e-028
gb|CD234570.1|CD234570 SS1_14_E12.g1_A012 Salt-stressed see... 119 4e-025
gb|AW746192.1|AW746192 WS1_40_A04.b1_A002 Water-stressed 1 ... 109 3e-022
gb|BZ338704.1|BZ338704 ia97c08.g1 WGS-SbicolorF (JM107 adap... 92 8e-017
gb|CW361677.1|CW361677 fsbb001f030f23f0 Sorghum methylation... 92 8e-017
gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorgh... 78 1e-012
gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorgh... 78 1e-012
gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorgh... 78 1e-012
gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation... 78 1e-012
gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/c... 78 1e-012
gb|CW086991.1|CW086991 104_431_10947336_114_33025_092 Sorgh... 70 3e-010
gb|BE357301.1|BE357301 DG1_148_A07.b1_A002 Dark Grown 1 (DG... 62 7e-008
>gb|BI141124.1|BI141124 IP1_43_D11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 757 bits (382), Expect = 0.0
Identities = 508/550 (92%)
Strand = Plus / Minus
Query: 21 gcttcaagatagtcgctgtataaagaagcaaggaaagctgcgttgacagcgtactgaagc 80
||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 578 gcttcaagataatcactgtataaagaagcaaggaaagctgcattgacagcatactgaagt 519
Query: 81 ggttgaggccttccatggttgagctgtattaatcctcctttggtgaagttgaatgaattg 140
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 518 ggttgaggccttccatggttgagttgtattaatcctcctttagtgaagttgaatgaattg 459
Query: 141 aatacaggtaaatacgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatt 200
|||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 458 aatagaggtaaatacgagcacataacgttgtcagtttggttgtggaatgtcctcagtatt 399
Query: 201 tcttcgtaagggtaccctggacttaggaagagtcgcagcctgctgagaagaacctgagct 260
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 398 tcttcgtaagggtaccctggacttaggaagagtcgcagcctgctgagaaggacctgagct 339
Query: 261 cctggaagtttgtcatcccaggtaaacactccgtagtttggacttccaaaccagtatgct 320
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||
Sbjct: 338 cctggaagtttgtcatcccaggtaaatactccatagtttggacttccaaaccaataggct 279
Query: 321 ccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgagttgttccccgtg 380
||||| ||||| |||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 278 ccagcatgctttgccattcctggggctgtggcgactgtgagatatgaattgttccctgtg 219
Query: 381 gcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtag 440
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 218 gcgaagtacatccacgcaccaccccacacaaactcatcccagtagctggtggaattgtag 159
Query: 441 aagatggcctggtcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttg 500
|| || ||||| || ||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct: 158 aaaattgcctgatcggatccattggggctgtatcgcccgcgctgcagcctgccaaatttg 99
Query: 501 tacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacact 560
||||| || || || || |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 98 tacagagcttttgcacctttgacgagcttgtcagagtaggttttgctgtccttgaacact 39
Query: 561 atggaagctg 570
||||||||||
Sbjct: 38 atggaagctg 29
>gb|BG047859.1|BG047859 OV1_28_F10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 720 bits (363), Expect = 0.0
Identities = 492/535 (91%)
Strand = Plus / Minus
Query: 7 caggcgtgtcagccgcttcaagatagtcgctgtataaagaagcaaggaaagctgcgttga 66
|||||||||| || ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct: 539 caggcgtgtctgcagcttcaagataatcactgtataaagaagcaaggaaagctgcattga 480
Query: 67 cagcgtactgaagcggttgaggccttccatggttgagctgtattaatcctcctttggtga 126
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 479 cagcatactgaagtggttgaggccttccatggttgagttgtattaatcctcctttagtga 420
Query: 127 agttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtttggttgtgga 186
|||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct: 419 agttgaatgaattgaatagaggtaaatacgagcacataacgttgtcagtttggttgtgga 360
Query: 187 atgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgcagcctgctga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgcagcctgctga 300
Query: 247 gaagaacctgagctcctggaagtttgtcatcccaggtaaacactccgtagtttggacttc 306
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 299 gaaggacctgagctcctggaagtttgtcatcccaggtaaatactccatagtttggacttc 240
Query: 307 caaaccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacg 366
||||||| || |||||||| ||||| |||||||| |||||||||||||| ||||| || |
Sbjct: 239 caaaccaataggctccagcatgctttgccattcctggggctgtggcgactgtgagatatg 180
Query: 367 agttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagc 426
| |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 179 aattgttccctgtggcgaagtacatccacgcaccaccccacacaaactcatcccagtagc 120
Query: 427 tggtggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgca 486
||||||| |||||||| || ||||| || ||||| ||||||||||||||||| |||||||
Sbjct: 119 tggtggaattgtagaaaattgcctgatcggatccattggggctgtatcgcccgcgctgca 60
Query: 487 gcctgccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggt 541
||||||| || |||||||| || || || || |||||||||||||| ||||||||
Sbjct: 59 gcctgccaaatttgtacagagcttttgcacctttgacgagcttgtcagagtaggt 5
>gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 656 bits (331), Expect = 0.0
Identities = 442/479 (92%)
Strand = Plus / Minus
Query: 92 tccatggttgagctgtattaatcctcctttggtgaagttgaatgaattgaatacaggtaa 151
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 592 tccatggttgagttgtattaatcctcctttagtgaagttgaatgaattgaatagaggtaa 533
Query: 152 atacgagcacatgacgttgtcggtttggttgtggaatgtcctcagtatttcttcgtaagg 211
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atacgagcacataacgttgtcagtttggttgtggaatgtcctcagtatttcttcgtaagg 473
Query: 212 gtaccctggacttaggaagagtcgcagcctgctgagaagaacctgagctcctggaagttt 271
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 472 gtaccctggacttaggaagagtcgcagcctgctgagaaggacctgagctcctggaagttt 413
Query: 272 gtcatcccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgctt 331
||||||||||||||| ||||| |||||||||||||||||||| || |||||||| |||||
Sbjct: 412 gtcatcccaggtaaatactccatagtttggacttccaaaccaataggctccagcatgctt 353
Query: 332 cgccattcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacat 391
|||||||| |||||||||||||| ||||| || || |||||||| ||||||||||||||
Sbjct: 352 tgccattcctggggctgtggcgactgtgagatatgaattgttccctgtggcgaagtacat 293
Query: 392 ccacgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctg 451
||||||||| |||||||| ||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 292 ccacgcaccaccccacacaaactcatcccagtagctggtggaattgtagaaaattgcctg 233
Query: 452 gtcagatccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggcctt 511
|| ||||| ||||||||||||||||| |||||||||||||| || |||||||| || ||
Sbjct: 232 atcggatccattggggctgtatcgcccgcgctgcagcctgccaaatttgtacagagcttt 173
Query: 512 ggcgcccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
|| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 172 tgcacctttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctg 114
>gb|BF481389.1|BF481389 FM1_18_E02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 442 bits (223), Expect = e-122
Identities = 262/275 (95%)
Strand = Plus / Minus
Query: 1 accacccaggcgtgtcagccgcttcaagatagtcgctgtataaagaagcaaggaaagctg 60
|||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||
Sbjct: 283 accacccaggcgtgtctgcagcttcaagataatcactgtataaagaagcaaggaaagctg 224
Query: 61 cgttgacagcgtactgaagcggttgaggccttccatggttgagctgtattaatcctcctt 120
| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 223 cattgacagcatactgaagtggttgaggccttccatggttgagttgtattaatcctcctt 164
Query: 121 tggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtttggt 180
| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct: 163 tagtgaagttgaatgaattgaatagaggtaaatacgagcacataacgttgtcagtttggt 104
Query: 181 tgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgcagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tgtggaatgtcctcagtatttcttcgtaagggtaccctggacttaggaagagtcgcagcc 44
Query: 241 tgctgagaagaacctgagctcctggaagtttgtca 275
|||||||||| ||||||||||||||||||||||||
Sbjct: 43 tgctgagaaggacctgagctcctggaagtttgtca 9
>gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 337 bits (170), Expect = 8e-091
Identities = 263/294 (89%)
Strand = Plus / Minus
Query: 277 cccaggtaaacactccgtagtttggacttccaaaccagtatgctccagcgtgcttcgcca 336
|||||||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||
Sbjct: 628 cccaggtaaatactccatagtttggacttccaaaccaataggctccagcatgctttgcca 569
Query: 337 ttcccggggctgtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacg 396
|||| |||||||||||||| ||||| || || |||||||| |||||||||||||||||||
Sbjct: 568 ttcctggggctgtggcgactgtgagatatgaattgttccctgtggcgaagtacatccacg 509
Query: 397 caccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctggtcag 456
|||| |||||||| ||||| ||||||||||||||||| |||||||| || ||||| || |
Sbjct: 508 caccaccccacacaaactcatcccagtagctggtggaattgtagaaaattgcctgatcgg 449
Query: 457 atccgttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgc 516
|||| ||||||||||||||||| |||||||||||||| || |||||||| || || || |
Sbjct: 448 atccattggggctgtatcgcccgcgctgcagcctgccaaatttgtacagagcttttgcac 389
Query: 517 ccttgacgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 388 ctttgacgagcttgtcagagtaggttttgctgtccttgaacactatggaagctg 335
>gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007j03, DNA
sequence
Length = 502
Score = 307 bits (155), Expect = 7e-082
Identities = 252/283 (89%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 288 actccgtagtttggacttccaaaccagtatgctccagcgtgcttcgccattcccggggct 347
||||| |||||||||||||||| ||| || |||||||| ||||| |||||||| ||||||
Sbjct: 4 actccatagtttggacttccaa-ccaataggctccagcatgctttgccattcctggggct 62
Query: 348 gtggcgacggtgaggtacgagttgttccccgtggcgaagtacatccacgcaccgccccac 407
|||||||| ||||| || || |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 63 gtggcgactgtgagatatgaattgttccctgtggcgaagtacatccacgcaccaccccac 122
Query: 408 acgaactcgtcccagtagctggtggagttgtagaagatggcctggtcagatccgttgggg 467
|| ||||| ||||||||||||||||| |||||||| || ||||| || ||||| ||||||
Sbjct: 123 acaaactcatcccagtagctggtggaattgtagaaaattgcctgatcggatccattgggg 182
Query: 468 ctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttgacgagc 527
||||||||||| |||||||||||||| || |||||||| || || || || |||||||||
Sbjct: 183 ctgtatcgcccgcgctgcagcctgccaaatttgtacagagcttttgcacctttgacgagc 242
Query: 528 ttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 243 ttgtcagagtaggttttgctgtccttgaacactatggaagctg 285
>gb|CN134485.1|CN134485 OX1_26_D08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_D08_A002 5', mRNA sequence
Length = 814
Score = 307 bits (155), Expect = 7e-082
Identities = 198/211 (93%), Gaps = 1/211 (0%)
Strand = Plus / Minus
Query: 1 accacccaggcgtgtcagccgcttcaagatagtcgctgtataaagaagcaaggaaagctg 60
|||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||
Sbjct: 210 accacccaggcgtgtctgcagcttcaagataatcactgtataaagaagcaaggaaagctg 151
Query: 61 cgttgacagcgtactgaagcggttgaggccttccatggttgagctgtattaatcctcctt 120
| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 150 cattgacagcatactgaagtggttgaggccttccatggttgagttgtattaatcctcctt 91
Query: 121 tggtgaagttgaatgaattgaatacaggtaaatacgagcacatgacgttgtcggtttggt 180
| |||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||
Sbjct: 90 tagtgaagttgaatgaattgaatagaggtaaatacgagcacataacgttgtcagtttggt 31
Query: 181 tgtggaatgtcctcagtatttcttcgtaagg 211
||||||||||||||||| |||||||||||||
Sbjct: 30 tgtggaatgtcctcagt-tttcttcgtaagg 1
>gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 438
Score = 289 bits (146), Expect = 2e-076
Identities = 233/262 (88%)
Strand = Plus / Minus
Query: 309 aaccagtatgctccagcgtgcttcgccattcccggggctgtggcgacggtgaggtacgag 368
||||| || |||||||| ||||| |||||||| |||||||||||||| ||||| || ||
Sbjct: 438 aaccaataggctccagcatgctttgccattcctggggctgtggcgactgtgagatatgaa 379
Query: 369 ttgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctg 428
|||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 378 ttgttccctgtggcgaagtacatccacgcaccaccccacacaaactcatcccagtagctg 319
Query: 429 gtggagttgtagaagatggcctggtcagatccgttggggctgtatcgcccacgctgcagc 488
||||| |||||||| || ||||| || ||||| ||||||||||||||||| |||||||||
Sbjct: 318 gtggaattgtagaaaattgcctgatcggatccattggggctgtatcgcccgcgctgcagc 259
Query: 489 ctgccgaacttgtacagggccttggcgcccttgacgagcttgtcggagtaggtcttgctg 548
||||| || |||||||| || || || || |||||||||||||| |||||||| ||||||
Sbjct: 258 ctgccaaatttgtacagagcttttgcacctttgacgagcttgtcagagtaggttttgctg 199
Query: 549 tccttgaacactatggaagctg 570
||||||||||||||||||||||
Sbjct: 198 tccttgaacactatggaagctg 177
>gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 192 bits (97), Expect = 3e-047
Identities = 151/169 (89%)
Strand = Plus / Minus
Query: 402 ccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctggtcagatccg 461
|||||||| ||||| ||||||||||||||||| |||||||| || ||||| || |||||
Sbjct: 581 ccccacacaaactcatcccagtagctggtggaattgtagaaaattgcctgatcggatcca 522
Query: 462 ttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttg 521
||||||||||||||||| |||||||||||||| || |||||||| || || || || |||
Sbjct: 521 ttggggctgtatcgcccgcgctgcagcctgccaaatttgtacagagcttttgcacctttg 462
Query: 522 acgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 461 acgagcttgtcagagtaggttttgctgtccttgaacactatggaagctg 413
>gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 446
Score = 192 bits (97), Expect = 3e-047
Identities = 151/169 (89%)
Strand = Plus / Minus
Query: 402 ccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctggtcagatccg 461
|||||||| ||||| ||||||||||||||||| |||||||| || ||||| || |||||
Sbjct: 444 ccccacacaaactcatcccagtagctggtggaattgtagaaaattgcctgatcggatcca 385
Query: 462 ttggggctgtatcgcccacgctgcagcctgccgaacttgtacagggccttggcgcccttg 521
||||||||||||||||| |||||||||||||| || |||||||| || || || || |||
Sbjct: 384 ttggggctgtatcgcccgcgctgcagcctgccaaatttgtacagagcttttgcacctttg 325
Query: 522 acgagcttgtcggagtaggtcttgctgtccttgaacactatggaagctg 570
||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 324 acgagcttgtcagagtaggttttgctgtccttgaacactatggaagctg 276
>gb|CL175875.1|CL175875 104_381_10892754_116_31765_354 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10892754, DNA sequence
Length = 733
Score = 129 bits (65), Expect = 4e-028
Identities = 86/93 (92%)
Strand = Plus / Minus
Query: 1 accacccaggcgtgtcagccgcttcaagatagtcgctgtataaagaagcaaggaaagctg 60
|||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||
Sbjct: 93 accacccaggcgtgtctgcagcttcaagataatcactgtataaagaagcaaggaaagctg 34
Query: 61 cgttgacagcgtactgaagcggttgaggccttc 93
| |||||||| |||||||| |||||||||||||
Sbjct: 33 cattgacagcatactgaagtggttgaggccttc 1
>gb|CD234570.1|CD234570 SS1_14_E12.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_14_E12_A012 5', mRNA sequence
Length = 108
Score = 119 bits (60), Expect = 4e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 394 acgcaccgccccacacgaactcgtcccagtagctggtggagttgtagaagatggcctggt 453
||||||| |||||||| ||||| ||||||||||||||||| |||||||| || ||||| |
Sbjct: 108 acgcaccaccccacacaaactcatcccagtagctggtggaattgtagaaaattgcctgat 49
Query: 454 cagatccgttggggctgtatcgcccacgctgcagcctgcc 493
| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 48 cggatccattggggctgtatcgcccgcgctgcagcctgcc 9
>gb|AW746192.1|AW746192 WS1_40_A04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 581
Score = 109 bits (55), Expect = 3e-022
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 1 accacccaggcgtgtcagccgcttcaagatagtcgctgtataaagaagcaaggaaagctg 60
|||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||
Sbjct: 79 accacccaggcgtgtctgcagcttcaagataatcactgtataaagaagcaaggaaagctg 20
Query: 61 cgttgacagcgtactgaag 79
| |||||||| ||||||||
Sbjct: 19 cattgacagcatactgaag 1
>gb|BZ338704.1|BZ338704 ia97c08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia97c08 5', DNA sequence
Length = 661
Score = 91.7 bits (46), Expect = 8e-017
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||||||| |||||| |||||| ||||||| ||| ||||||||||||||||||
Sbjct: 563 tgttgcccgtggcgtagtacacccacgcggcgccccagacgtactcgtcccagtagctgg 622
Query: 430 tggagttgtagaag 443
||||||||||||||
Sbjct: 623 tggagttgtagaag 636
>gb|CW361677.1|CW361677 fsbb001f030f23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f030f23, DNA
sequence
Length = 564
Score = 91.7 bits (46), Expect = 8e-017
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||||||| |||||| |||||| ||||||| ||| ||||||||||||||||||
Sbjct: 457 tgttgcccgtggcgtagtacacccacgcggcgccccagacgtactcgtcccagtagctgg 398
Query: 430 tggagttgtagaag 443
||||||||||||||
Sbjct: 397 tggagttgtagaag 384
>gb|CW164355.1|CW164355 104_572_11151945_116_36461_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151945, DNA
sequence
Length = 766
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||| ||| ||||||||||||| ||| ||||| | ||||||||||||||||||
Sbjct: 199 tgttgcccgtcgcgtagtacatccacgccgcgctccacatgtactcgtcccagtagctgg 140
Query: 430 tggagttgtag 440
|||||||||||
Sbjct: 139 tggagttgtag 129
>gb|CW230233.1|CW230233 104_671_11207740_116_37270_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 712
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||| ||| ||||||||||||| ||| ||||| | ||||||||||||||||||
Sbjct: 527 tgttgcccgtcgcgtagtacatccacgccgcgctccacatgtactcgtcccagtagctgg 586
Query: 430 tggagttgtag 440
|||||||||||
Sbjct: 587 tggagttgtag 597
>gb|CW230234.1|CW230234 104_671_11207740_148_37266_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207740, DNA
sequence
Length = 650
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||| ||| ||||||||||||| ||| ||||| | ||||||||||||||||||
Sbjct: 410 tgttgcccgtcgcgtagtacatccacgccgcgctccacatgtactcgtcccagtagctgg 351
Query: 430 tggagttgtag 440
|||||||||||
Sbjct: 350 tggagttgtag 340
>gb|CW459444.1|CW459444 fsbb001f206d04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206d04, DNA
sequence
Length = 516
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||| ||| ||||||||||||| ||| ||||| | ||||||||||||||||||
Sbjct: 324 tgttgcccgtcgcgtagtacatccacgccgcgctccacatgtactcgtcccagtagctgg 383
Query: 430 tggagttgtag 440
|||||||||||
Sbjct: 384 tggagttgtag 394
>gb|CD220536.1|CD220536 CCC1_67_H06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_H06_A007 5', mRNA sequence
Length = 645
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||| ||| ||||||||||||| ||| ||||| | ||||||||||||||||||
Sbjct: 71 tgttgcccgtcgcgtagtacatccacgccgcgctccacatgtactcgtcccagtagctgg 12
Query: 430 tggagttgtag 440
|||||||||||
Sbjct: 11 tggagttgtag 1
>gb|CW086991.1|CW086991 104_431_10947336_114_33025_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947336, DNA
sequence
Length = 729
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 401 gccccacacgaactcgtcccagtagctggtggagttgtagaag 443
|||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1 gccccagacgtactcgtcccagtagctggtggagttgtagaag 43
>gb|BE357301.1|BE357301 DG1_148_A07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 61.9 bits (31), Expect = 7e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 370 tgttccccgtggcgaagtacatccacgcaccgccccacacgaactcgtcccagtagctgg 429
|||| ||||| ||| ||||||||||| | ||| ||||| | ||||||||||||||||||
Sbjct: 551 tgttgcccgtcgcgtagtacatccaccccgcgctccacatgtactcgtcccagtagctgg 492
Query: 430 tggagttgtag 440
|| ||||||||
Sbjct: 491 tgcagttgtag 481
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,776
Number of Sequences: 832831
Number of extensions: 127776
Number of successful extensions: 36085
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36045
Number of HSP's gapped (non-prelim): 38
length of query: 689
length of database: 491,359,669
effective HSP length: 19
effective length of query: 670
effective length of database: 475,535,880
effective search space: 318609039600
effective search space used: 318609039600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)